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BioLiP
Download all results in tab-seperated text for 123 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jku:A (1.84) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    2 1jku:A (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    3 1jku:B (1.84) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    4 1jku:B (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    5 1jku:C (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    6 1jku:C (1.84) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    7 1jku:D (1.84) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    8 1jku:D (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    9 1jku:E (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    10 1jku:E (1.84) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    11 1jku:F (1.84) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    12 1jku:F (1.84) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    13 1jkv:A (1.39) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    14 1jkv:A (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    15 1jkv:B (1.39) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    16 1jkv:B (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    17 1jkv:C (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    18 1jkv:C (1.39) BS05 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    19 1jkv:D (1.39) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    20 1jkv:D (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    21 1jkv:E (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    22 1jkv:E (1.39) BS05 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    23 1jkv:F (1.39) BS04 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    24 1jkv:F (1.39) BS05 MN3 1.11.1.6 GO:0004096 ... P60355 11587647
    25 1o9i:A (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    26 1o9i:A (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    27 1o9i:B (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    28 1o9i:B (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    29 1o9i:C (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30 1o9i:C (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    31 1o9i:D (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    32 1o9i:D (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    33 1o9i:E (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    34 1o9i:E (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35 1o9i:F (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36 1o9i:F (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    37 1pm9:A (1.7) BS01 MN3 1.15.1.1 GO:0004784 ... P04179 14638684
    38 1pm9:B (1.7) BS01 MN3 1.15.1.1 GO:0004784 ... P04179 14638684
    39 1var:A (2.5) BS01 MN3 1.15.1.1 GO:0004784 ... P04179 8605177
    40 1var:B (2.5) BS01 MN3 1.15.1.1 GO:0004784 ... P04179 8605177
    41 2xkq:A (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    42 2xkq:B (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    43 2xkq:C (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    44 2xkq:D (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    45 2xkq:E (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    46 2xkq:F (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    47 2xkq:G (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    48 2xkq:H (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    49 2xkq:I (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    50 2xkq:J (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    51 2xkq:K (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    52 2xkq:L (2.4) BS01 MN3 1.16.-.- GO:0005737 ... P0CB53 21056572
    53 3bfr:A (2.05) BS01 MN3 1.15.1.1 GO:0004784 ... P00447 22102021
    54 3ee4:A (1.9) BS01 MN3 1.-.-.- GO:0005506 ... P9WH69 19321420
    55 3l57:A (2.293) BS01 MN3 3.6.1.- N/A Q9X4G2 20448025
    56 3l57:B (2.293) BS01 MN3 3.6.1.- N/A Q9X4G2 20448025
    57 3mds:A (1.8) BS01 MN3 1.15.1.1 GO:0004784 ... P61503 2038060
    58 3mds:B (1.8) BS01 MN3 1.15.1.1 GO:0004784 ... P61503 2038060
    59 3mjo:A (1.36) BS01 MN3 1.17.4.1 GO:0004748 ... O69274 20698687
    60 3mjo:A (1.36) BS02 MN3 1.17.4.1 GO:0004748 ... O69274 20698687
    61 3mjo:B (1.36) BS01 MN3 1.17.4.1 GO:0004748 ... O69274 20698687
    62 3mjo:B (1.36) BS02 MN3 1.17.4.1 GO:0004748 ... O69274 20698687
    63 3nai:A (2.56) BS03 MN3 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 N/A
    64 3nai:A (2.56) BS04 MN3 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 N/A
    65 3nai:B (2.56) BS03 MN3 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 N/A
    66 3nai:B (2.56) BS04 MN3 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 N/A
    67 3nai:C (2.56) BS02 MN3 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 N/A
    68 3nai:C (2.56) BS03 MN3 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 N/A
    69 3oba:A (2.75) BS01 MN3 3.2.1.23 GO:0003824 ... P00723 22193516
    70 3oba:B (2.75) BS01 MN3 3.2.1.23 GO:0003824 ... P00723 22193516
    71 3oba:C (2.75) BS01 MN3 3.2.1.23 GO:0003824 ... P00723 22193516
    72 3oba:D (2.75) BS01 MN3 3.2.1.23 GO:0003824 ... P00723 22193516
    73 3qid:A (2.5) BS01 MN3 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 21471315
    74 3qid:B (2.5) BS01 MN3 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 21471315
    75 3qid:C (2.5) BS01 MN3 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 21471315
    76 4br6:A (2.0) BS01 MN3 1.15.1.1 GO:0004784 ... F8V325 24316252
    77 4br6:B (2.0) BS01 MN3 1.15.1.1 GO:0004784 ... F8V325 24316252
    78 4br6:C (2.0) BS01 MN3 1.15.1.1 GO:0004784 ... F8V325 24316252
    79 4br6:D (2.0) BS01 MN3 1.15.1.1 GO:0004784 ... F8V325 24316252
    80 4hr0:A (1.896) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 24101498
    81 4kp7:A (2.0) BS01 MN3 1.1.1.267 GO:0008299 ... O96693 24032981
    82 4kp7:B (2.0) BS01 MN3 1.1.1.267 GO:0008299 ... O96693 24032981
    83 5dcr:A (2.108) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    84 5dcs:A (2.006) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    85 5ekb:A (2.074) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 27138102
    86 5ize:A (1.7) BS01 MN3 2.7.7.48
    3.1.-.-    		 N/A P23456 27304209
    87 5ize:A (1.7) BS02 MN3 2.7.7.48
    3.1.-.-    		 N/A P23456 27304209
    88 5ize:A (1.7) BS03 MN3 2.7.7.48
    3.1.-.-    		 N/A P23456 27304209
    89 5ize:B (1.7) BS01 MN3 2.7.7.48
    3.1.-.-    		 N/A P23456 27304209
    90 5ize:B (1.7) BS02 MN3 2.7.7.48
    3.1.-.-    		 N/A P23456 27304209
    91 5ize:B (1.7) BS03 MN3 2.7.7.48
    3.1.-.-    		 N/A P23456 27304209
    92 5j1n:A (1.09) BS01 MN3 2.7.7.48
    3.1.-.-    		 N/A Q6GWS6 27304209
    93 5j1p:A (2.36) BS01 MN3 2.7.7.48
    3.1.-.-    		 N/A Q6GWS6 27304209
    94 5j1p:A (2.36) BS02 MN3 2.7.7.48
    3.1.-.-    		 N/A Q6GWS6 27304209
    95 6f65:A (1.948) BS02 MN3 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    96 6f6c:A (1.766) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    97 6f6c:B (1.766) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    98 6f6f:A (1.788) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    99 6f6h:A (1.764) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    100 6f6h:B (1.764) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    101 6f6l:A (1.904) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    102 6f6l:B (1.904) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    103 6i90:A (1.803) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    104 6kk8:A (1.37) BS01 MN3 1.11.1.6 GO:0004096 ... Q72GH6 N/A
    105 6kk8:A (1.37) BS02 MN3 1.11.1.6 GO:0004096 ... Q72GH6 N/A
    106 6kk8:B (1.37) BS01 MN3 1.11.1.6 GO:0004096 ... Q72GH6 N/A
    107 6kk8:B (1.37) BS02 MN3 1.11.1.6 GO:0004096 ... Q72GH6 N/A
    108 6q99:A (2.951) BS01 MN3 2.7.7.48
    3.1.-.-    		 N/A Q9E005 N/A
    109 6q99:A (2.951) BS02 MN3 2.7.7.48
    3.1.-.-    		 N/A Q9E005 N/A
    110 6qjv:A (1.905) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    111 6qk1:A (1.754) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 32062969
    112 6qrz:A (3.0) BS01 MN3 1.17.4.1 GO:0004748 ... Q4J6V7 31457106
    113 6qvv:A (2.4) BS01 MN3 2.7.7.48
    3.1.-.-    		 N/A P37800 31584100
    114 6qvv:B (2.4) BS01 MN3 2.7.7.48
    3.1.-.-    		 N/A P37800 31584100
    115 6qw0:A (1.5) BS01 MN3 2.7.7.48
    3.1.-.-    		 N/A P37800 31584100
    116 6qw0:B (1.5) BS01 MN3 2.7.7.48
    3.1.-.-    		 N/A P37800 31584100
    117 6y2n:A (2.4) BS01 MN3 1.17.4.1 GO:0004748 ... A4F980 32876583
    118 7kks:A (2.2) BS01 MN3 1.15.1.1 GO:0000302 ... P04179 33824320
    119 7kks:B (2.2) BS01 MN3 1.15.1.1 GO:0000302 ... P04179 33824320
    120 7kku:A (2.02) BS01 MN3 1.15.1.1 GO:0000302 ... P04179 33824320
    121 7kku:B (2.02) BS01 MN3 1.15.1.1 GO:0000302 ... P04179 33824320
    122 7qbk:A (2.26) BS01 MN3 ? GO:0009263 ... Q4J9R6 35175627
    123 7qbp:A (1.38) BS01 MN3 1.-.-.- GO:0009263 ... A4F7B2 35175627
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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