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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 1twa:A (3.2) BS01 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    1602 1twa:A (3.2) BS02 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    1603 1twc:A (3.0) BS02 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    1604 1twc:A (3.0) BS03 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    1605 1twf:A (2.3) BS02 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    1606 1twf:A (2.3) BS03 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    1607 1twg:A (3.3) BS01 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    1608 1twg:A (3.3) BS02 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    1609 1twh:A (3.4) BS01 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    1610 1twh:A (3.4) BS02 MN 2.7.7.6 GO:0000428 ... P04050 15537538
    1611 1txo:A (1.95) BS01 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    1612 1txo:A (1.95) BS02 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    1613 1txo:A (1.95) BS03 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    1614 1txo:B (1.95) BS01 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    1615 1txo:B (1.95) BS02 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    1616 1txo:B (1.95) BS03 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    1617 1u32:A (2.0) BS01 MN 3.1.3.16 GO:0000070 ... P36873 15280359
    1618 1u32:A (2.0) BS02 MN 3.1.3.16 GO:0000070 ... P36873 15280359
    1619 1u3e:M (2.92) BS04 MN 3.1.-.- GO:0004519 ... P34081 15313606
    1620 1u5b:A (1.83) BS01 MN 1.2.4.4 GO:0003863 ... P12694 15576032
    1621 1u8x:X (2.05) BS02 MN 3.2.1.122 GO:0003824 ... P54716 15341727
    1622 1ues:A (1.6) BS01 MN 1.15.1.1 GO:0004784 ... P19665 12962504
    1623 1ues:B (1.6) BS01 MN 1.15.1.1 GO:0004784 ... P19665 12962504
    1624 1ues:C (1.6) BS01 MN 1.15.1.1 GO:0004784 ... P19665 12962504
    1625 1ues:D (1.6) BS01 MN 1.15.1.1 GO:0004784 ... P19665 12962504
    1626 1ukg:A (1.7) BS02 MN ? GO:0030246 ... Q8GSD2 14729339
    1627 1ukg:B (1.7) BS02 MN ? GO:0030246 ... Q8GSD2 14729339
    1628 1uon:A (7.6) BS06 MN 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    1629 1uon:A (7.6) BS07 MN 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    1630 1up6:A (2.55) BS02 MN 3.2.1.86 GO:0003824 ... Q9X108 15237973
    1631 1up6:A (2.55) BS04 MN 3.2.1.86 GO:0003824 ... Q9X108 15237973
    1632 1up6:A (2.55) BS05 MN 3.2.1.86 GO:0003824 ... Q9X108 15237973
    1633 1up6:C (2.55) BS02 MN 3.2.1.86 GO:0003824 ... Q9X108 15237973
    1634 1up6:G (2.55) BS02 MN 3.2.1.86 GO:0003824 ... Q9X108 15237973
    1635 1ut5:A (2.75) BS01 MN 3.1.11.-
    3.1.11.3    		 GO:0003677 ... P06229 15077103
    1636 1uvi:A (2.15) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1637 1uvi:B (2.15) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1638 1uvi:C (2.15) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1639 1uvj:A (1.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1640 1uvj:B (1.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1641 1uvj:C (1.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1642 1uvk:A (2.45) BS01 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1643 1uvk:C (2.45) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1644 1uvk:E (2.45) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1645 1uvl:A (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1646 1uvl:C (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1647 1uvl:E (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1648 1uvm:A (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1649 1uvm:B (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1650 1uvm:C (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1651 1uvn:A (3.0) BS05 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1652 1uvn:C (3.0) BS05 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1653 1uvn:E (3.0) BS05 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    1654 1uw8:A (2.0) BS01 MN 4.1.1.2 GO:0005737 ... O34714 14871895
    1655 1uw8:A (2.0) BS02 MN 4.1.1.2 GO:0005737 ... O34714 14871895
    1656 1uzy:A (2.0) BS04 MN ? GO:0030246 ... Q6YD91 15201215
    1657 1uzy:B (2.0) BS04 MN ? GO:0030246 ... Q6YD91 15201215
    1658 1uzz:A (2.13) BS02 MN ? GO:0030246 ... Q6YD91 15201215
    1659 1uzz:B (2.13) BS02 MN ? GO:0030246 ... Q6YD91 15201215
    1660 1uzz:C (2.13) BS02 MN ? GO:0030246 ... Q6YD91 15201215
    1661 1uzz:D (2.13) BS02 MN ? GO:0030246 ... Q6YD91 15201215
    1662 1v00:A (1.7) BS03 MN ? GO:0030246 ... Q6YD91 15201215
    1663 1v00:B (1.7) BS03 MN ? GO:0030246 ... Q6YD91 15201215
    1664 1v00:C (1.7) BS03 MN ? GO:0030246 ... Q6YD91 15201215
    1665 1v00:D (1.7) BS03 MN ? GO:0030246 ... Q6YD91 15201215
    1666 1v11:A (1.95) BS01 MN 1.2.4.4 GO:0003863 ... P12694 15166214
    1667 1v16:A (1.9) BS01 MN 1.2.4.4 GO:0003863 ... P12694 15166214
    1668 1v1f:A (3.0) BS04 MN ? GO:0004723 ... O81223 15644219
    1669 1v1m:A (2.0) BS02 MN 1.2.4.4 GO:0003863 ... P12694 15166214
    1670 1v6i:A (2.15) BS03 MN ? GO:0030246 ... P02872 14747696
    1671 1v6i:B (2.15) BS04 MN ? GO:0030246 ... P02872 14747696
    1672 1v6i:C (2.15) BS04 MN ? GO:0030246 ... P02872 14747696
    1673 1v6i:D (2.15) BS04 MN ? GO:0030246 ... P02872 14747696
    1674 1v6j:A (2.9) BS04 MN ? GO:0030246 ... P02872 14747696
    1675 1v6j:B (2.9) BS03 MN ? GO:0030246 ... P02872 14747696
    1676 1v6j:C (2.9) BS04 MN ? GO:0030246 ... P02872 14747696
    1677 1v6j:D (2.9) BS04 MN ? GO:0030246 ... P02872 14747696
    1678 1v6k:A (2.4) BS04 MN ? GO:0030246 ... P02872 14747696
    1679 1v6k:B (2.4) BS04 MN ? GO:0030246 ... P02872 14747696
    1680 1v6k:C (2.4) BS04 MN ? GO:0030246 ... P02872 14747696
    1681 1v6k:D (2.4) BS04 MN ? GO:0030246 ... P02872 14747696
    1682 1v6l:A (2.5) BS04 MN ? GO:0030246 ... P02872 14747696
    1683 1v6l:B (2.5) BS04 MN ? GO:0030246 ... P02872 14747696
    1684 1v6l:C (2.5) BS04 MN ? GO:0030246 ... P02872 14747696
    1685 1v6l:D (2.5) BS04 MN ? GO:0030246 ... P02872 14747696
    1686 1v6m:A (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    1687 1v6m:B (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    1688 1v6m:C (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    1689 1v6m:D (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    1690 1v6m:E (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    1691 1v6m:F (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    1692 1v6m:G (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    1693 1v6m:H (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    1694 1v6n:A (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    1695 1v6n:B (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    1696 1v6n:C (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    1697 1v6n:D (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    1698 1v6n:E (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    1699 1v6n:F (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    1700 1v6n:G (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    1701 1v6n:H (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    1702 1v6o:A (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    1703 1v6o:B (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    1704 1v6o:C (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    1705 1v6o:D (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    1706 1v6o:E (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    1707 1v6o:F (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    1708 1v6o:G (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    1709 1v6o:H (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    1710 1v7p:C (1.9) BS01 MN ? N/A P17301 15276841
    1711 1v7z:A (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    1712 1v7z:B (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    1713 1v7z:C (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    1714 1v7z:D (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    1715 1v7z:E (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    1716 1v7z:F (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    1717 1v83:A (1.9) BS01 MN 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    1718 1v83:B (1.9) BS01 MN 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    1719 1v84:B (1.82) BS02 MN 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    1720 1val:A (3.0) BS02 MN ? GO:0030246 ... P02866 8812993
    1721 1val:B (3.0) BS02 MN ? GO:0030246 ... P02866 8812993
    1722 1val:C (3.0) BS02 MN ? GO:0030246 ... P02866 8812993
    1723 1val:D (3.0) BS02 MN ? GO:0030246 ... P02866 8812993
    1724 1vam:A (2.75) BS02 MN ? GO:0030246 ... P02866 8812993
    1725 1vam:B (2.75) BS02 MN ? GO:0030246 ... P02866 8812993
    1726 1vam:C (2.75) BS02 MN ? GO:0030246 ... P02866 8812993
    1727 1vam:D (2.75) BS02 MN ? GO:0030246 ... P02866 8812993
    1728 1vew:A (2.1) BS01 MN 1.15.1.1 GO:0003677 ... P00448 N/A
    1729 1vew:B (2.1) BS01 MN 1.15.1.1 GO:0003677 ... P00448 N/A
    1730 1vew:C (2.1) BS01 MN 1.15.1.1 GO:0003677 ... P00448 N/A
    1731 1vew:D (2.1) BS01 MN 1.15.1.1 GO:0003677 ... P00448 N/A
    1732 1vj2:A (1.65) BS01 MN ? GO:0046872 ... Q9X1H0 15229893
    1733 1vj2:B (1.65) BS01 MN ? GO:0046872 ... Q9X1H0 15229893
    1734 1vj7:A (2.1) BS01 MN 2.7.6.5
    3.1.7.2    		 GO:0015969 ... Q54089 15066282
    1735 1vj7:B (2.1) BS01 MN 2.7.6.5
    3.1.7.2    		 GO:0015969 ... Q54089 15066282
    1736 1vkm:A (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1737 1vkm:A (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1738 1vkm:A (1.9) BS03 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1739 1vkm:B (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1740 1vkm:B (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1741 1vkm:C (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1742 1vkm:C (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1743 1vkm:C (1.9) BS03 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1744 1vkm:D (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1745 1vkm:D (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1746 1vkm:E (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1747 1vkm:E (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1748 1vkm:F (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1749 1vkm:F (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1750 1vkm:F (1.9) BS03 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    1751 1vln:A (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    1752 1vln:B (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    1753 1vln:C (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    1754 1vln:D (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    1755 1vln:E (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    1756 1vln:F (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    1757 1vln:G (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    1758 1vln:H (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    1759 1vs1:A (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    1760 1vs1:B (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    1761 1vs1:C (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    1762 1vs1:D (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    1763 1vsf:A (2.05) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 8805516
    1764 1vzt:A (2.0) BS01 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    1765 1vzt:B (2.0) BS01 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    1766 1vzu:A (1.97) BS03 MN 2.4.1.87 GO:0005975 ... P14769 15229192
    1767 1vzu:B (1.97) BS03 MN 2.4.1.87 GO:0005975 ... P14769 15229192
    1768 1vzx:A (1.97) BS02 MN 2.4.1.87 GO:0005975 ... P14769 15229192
    1769 1vzx:B (1.97) BS02 MN 2.4.1.87 GO:0005975 ... P14769 15229192
    1770 1w2z:A (2.24) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 15533431
    1771 1w2z:B (2.24) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 15533431
    1772 1w2z:C (2.24) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 15533431
    1773 1w2z:D (2.24) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 15533431
    1774 1w5c:A (3.2) BS06 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    1775 1w5c:G (3.2) BS06 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    1776 1w5c:G (3.2) BS07 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    1777 1w5c:G (3.2) BS08 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    1778 1wao:1 (2.9) BS01 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    1779 1wao:1 (2.9) BS02 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    1780 1wao:2 (2.9) BS01 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    1781 1wao:2 (2.9) BS02 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    1782 1wao:3 (2.9) BS01 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    1783 1wao:3 (2.9) BS02 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    1784 1wao:4 (2.9) BS01 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    1785 1wao:4 (2.9) BS02 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    1786 1wbf:A (2.3) BS01 MN ? GO:0030246 ... O24313 10089310
    1787 1wbf:B (2.3) BS01 MN ? GO:0030246 ... O24313 10089310
    1788 1wbl:A (2.5) BS02 MN ? GO:0030246 ... O24313 9500920
    1789 1wbl:B (2.5) BS02 MN ? GO:0030246 ... O24313 9500920
    1790 1wbl:C (2.5) BS02 MN ? GO:0030246 ... O24313 9500920
    1791 1wbl:D (2.5) BS02 MN ? GO:0030246 ... O24313 9500920
    1792 1wci:A (1.84) BS02 MN 1.2.4.4 GO:0003863 ... P12694 16472748
    1793 1wgi:A (2.2) BS01 MN 3.6.1.1 GO:0000287 ... P00817 8994974
    1794 1wgi:B (2.2) BS01 MN 3.6.1.1 GO:0000287 ... P00817 8994974
    1795 1wgj:A (2.0) BS01 MN 3.6.1.1 GO:0000287 ... P00817 8994974
    1796 1wgj:A (2.0) BS02 MN 3.6.1.1 GO:0000287 ... P00817 8994974
    1797 1wgj:B (2.0) BS01 MN 3.6.1.1 GO:0000287 ... P00817 8994974
    1798 1wgj:B (2.0) BS02 MN 3.6.1.1 GO:0000287 ... P00817 8994974
    1799 1wkm:A (2.3) BS01 MN 3.4.11.18 GO:0004177 ... P56218 15628852
    1800 1wkm:A (2.3) BS02 MN 3.4.11.18 GO:0004177 ... P56218 15628852
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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