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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 1qos:A (2.95) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    1402 1qos:B (2.95) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    1403 1qot:A (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    1404 1qot:B (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    1405 1qot:C (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    1406 1qot:D (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    1407 1qpr:A (2.45) BS01 MN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    1408 1qpr:B (2.45) BS01 MN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    1409 1qpr:C (2.45) BS01 MN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    1410 1qpr:D (2.45) BS01 MN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    1411 1qpr:F (2.45) BS01 MN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    1412 1qps:A (2.5) BS03 MN 3.1.21.4 GO:0000287 ... P00642 N/A
    1413 1r1o:A (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 14570477
    1414 1r1o:A (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 14570477
    1415 1r1o:B (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 14570477
    1416 1r1o:B (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 14570477
    1417 1r1o:C (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 14570477
    1418 1r1o:C (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 14570477
    1419 1r2m:A (1.0) BS01 MN ? GO:0005576 ... P79073 14555650
    1420 1r58:A (1.9) BS01 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    1421 1r58:A (1.9) BS02 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    1422 1r5g:A (2.0) BS01 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    1423 1r5g:A (2.0) BS02 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    1424 1r5h:A (2.4) BS01 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    1425 1r5h:A (2.4) BS02 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    1426 1r7y:A (1.75) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12972418
    1427 1r80:A (1.65) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12972418
    1428 1r89:A (1.8) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    1429 1r89:A (1.8) BS02 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    1430 1r8a:A (2.1) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    1431 1r8a:A (2.1) BS02 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    1432 1r8b:A (2.0) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    1433 1r8c:A (1.9) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    1434 1r8c:A (1.9) BS02 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    1435 1r8c:A (1.9) BS03 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    1436 1r8c:A (1.9) BS04 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    1437 1r8c:A (1.9) BS05 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    1438 1r9c:A (1.83) BS01 MN 2.5.1.1 GO:0005737 ... Q98GG1 14677948
    1439 1r9c:B (1.83) BS01 MN 2.5.1.1 GO:0005737 ... Q98GG1 14677948
    1440 1rin:A (2.6) BS02 MN ? GO:0030246 ... P02867 8486683
    1441 1rin:C (2.6) BS02 MN ? GO:0030246 ... P02867 8486683
    1442 1rir:A (2.9) BS02 MN ? GO:0030246 ... P02872 15823017
    1443 1rir:B (2.9) BS02 MN ? GO:0030246 ... P02872 15823017
    1444 1rir:C (2.9) BS02 MN ? GO:0030246 ... P02872 15823017
    1445 1rir:D (2.9) BS02 MN ? GO:0030246 ... P02872 15823017
    1446 1rit:A (2.85) BS03 MN ? GO:0030246 ... P02872 15823017
    1447 1rit:B (2.85) BS04 MN ? GO:0030246 ... P02872 15823017
    1448 1rit:C (2.85) BS05 MN ? GO:0030246 ... P02872 15823017
    1449 1rit:D (2.85) BS05 MN ? GO:0030246 ... P02872 15823017
    1450 1rla:A (2.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    1451 1rla:A (2.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    1452 1rla:B (2.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    1453 1rla:B (2.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    1454 1rla:C (2.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    1455 1rla:C (2.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 8849731
    1456 1rm0:A (2.05) BS01 MN 5.5.1.4 GO:0004512 ... P11986 14684747
    1457 1ro6:A (2.0) BS02 MN 3.1.4.53 GO:0004114 ... Q07343 15003452
    1458 1ro6:B (2.0) BS02 MN 3.1.4.53 GO:0004114 ... Q07343 15003452
    1459 1rqq:A (2.6) BS02 MN 2.7.10.1 GO:0004672 ... P06213 14690593
    1460 1rqq:B (2.6) BS02 MN 2.7.10.1 GO:0004672 ... P06213 14690593
    1461 1rzd:A (1.9) BS01 MN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15299481
    1462 1s1a:A (1.8) BS03 MN ? GO:0030246 ... Q8GSD2 N/A
    1463 1s1a:B (1.8) BS01 MN ? GO:0030246 ... Q8GSD2 N/A
    1464 1s3n:A (2.5) BS01 MN 3.1.4.- GO:0016787 ... Q58346 15128743
    1465 1s3n:A (2.5) BS02 MN 3.1.4.- GO:0016787 ... Q58346 15128743
    1466 1s3n:B (2.5) BS01 MN 3.1.4.- GO:0016787 ... Q58346 15128743
    1467 1s3n:B (2.5) BS02 MN 3.1.4.- GO:0016787 ... Q58346 15128743
    1468 1s4o:A (2.01) BS01 MN 2.4.1.- GO:0000030 ... P27809 14752117
    1469 1s4o:B (2.01) BS01 MN 2.4.1.- GO:0000030 ... P27809 14752117
    1470 1s4p:A (2.01) BS02 MN 2.4.1.- GO:0000030 ... P27809 14752117
    1471 1s4p:B (2.01) BS02 MN 2.4.1.- GO:0000030 ... P27809 14752117
    1472 1s5m:A (0.98) BS02 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    1473 1s5m:A (0.98) BS03 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    1474 1s5n:A (0.95) BS02 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    1475 1s5n:A (0.95) BS03 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    1476 1s70:A (2.7) BS01 MN 3.1.3.16
    3.1.3.53
    GO:0004721 ... P62207 15164081
    1477 1s70:A (2.7) BS02 MN 3.1.3.16
    3.1.3.53
    GO:0004721 ... P62207 15164081
    1478 1s8e:A (2.3) BS01 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    1479 1s8e:A (2.3) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    1480 1s8e:B (2.3) BS01 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    1481 1s8e:B (2.3) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    1482 1s95:A (1.6) BS01 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    1483 1s95:A (1.6) BS02 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    1484 1s95:B (1.6) BS01 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    1485 1s95:B (1.6) BS02 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    1486 1sbd:A (2.52) BS02 MN ? GO:0030246 ... P05046 9398234
    1487 1sbe:A (2.8) BS02 MN ? GO:0030246 ... P05046 9398234
    1488 1sbf:A (2.43) BS02 MN ? GO:0030246 ... P05046 9398234
    1489 1sfy:A (2.55) BS03 MN ? GO:0030246 ... P16404 15281133
    1490 1sfy:B (2.55) BS02 MN ? GO:0030246 ... P16404 15281133
    1491 1sfy:C (2.55) BS02 MN ? GO:0030246 ... P16404 15281133
    1492 1sfy:D (2.55) BS02 MN ? GO:0030246 ... P16404 15281133
    1493 1sfy:E (2.55) BS02 MN ? GO:0030246 ... P16404 15281133
    1494 1sfy:F (2.55) BS03 MN ? GO:0030246 ... P16404 15281133
    1495 1ss9:A (2.6) BS01 MN 2.4.1.44 GO:0016740 ... Q93EK7 15075344
    1496 1stx:A (2.1) BS05 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1497 1stx:A (2.1) BS06 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1498 1stx:A (2.1) BS07 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1499 1stx:A (2.1) BS08 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1500 1stx:B (2.1) BS05 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1501 1stx:B (2.1) BS06 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1502 1sx5:A (1.5) BS05 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1503 1sx5:A (1.5) BS06 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1504 1sx5:A (1.5) BS07 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1505 1sx5:B (1.5) BS05 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1506 1sx5:B (1.5) BS06 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1507 1sx5:B (1.5) BS07 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1508 1sx8:A (2.15) BS03 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1509 1sx8:A (2.15) BS04 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1510 1sx8:B (2.15) BS03 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1511 1sx8:B (2.15) BS04 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    1512 1szx:A (1.95) BS01 MN 1.15.1.1 GO:0004784 ... P04179 15170341
    1513 1szx:B (1.95) BS01 MN 1.15.1.1 GO:0004784 ... P04179 15170341
    1514 1t36:A (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1515 1t36:A (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1516 1t36:A (2.1) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1517 1t36:C (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1518 1t36:C (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1519 1t36:C (2.1) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1520 1t36:E (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1521 1t36:E (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1522 1t36:E (2.1) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1523 1t36:G (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1524 1t36:G (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1525 1t36:G (2.1) BS04 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    1526 1t4p:A (2.6) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1527 1t4p:A (2.6) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1528 1t4p:B (2.6) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1529 1t4p:B (2.6) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1530 1t4p:C (2.6) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1531 1t4p:C (2.6) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1532 1t4r:A (2.6) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1533 1t4r:A (2.6) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1534 1t4r:B (2.6) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1535 1t4r:B (2.6) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1536 1t4r:C (2.6) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1537 1t4r:C (2.6) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1538 1t4s:A (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1539 1t4s:A (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1540 1t4s:B (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1541 1t4s:B (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1542 1t4s:C (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1543 1t4s:C (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1544 1t4t:A (2.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1545 1t4t:A (2.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1546 1t4t:B (2.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1547 1t4t:B (2.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1548 1t4t:C (2.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1549 1t4t:C (2.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1550 1t5f:A (2.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15315440
    1551 1t5f:A (2.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15315440
    1552 1t5f:B (2.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15315440
    1553 1t5f:B (2.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15315440
    1554 1t5f:C (2.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 15315440
    1555 1t5f:C (2.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15315440
    1556 1t5g:A (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1557 1t5g:A (2.4) BS03 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1558 1t5g:B (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1559 1t5g:B (2.4) BS03 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1560 1t5g:C (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1561 1t5g:C (2.4) BS03 MN 3.5.3.1 GO:0000050 ... P07824 15248756
    1562 1t6b:Y (2.5) BS01 MN ? N/A P58335 15243628
    1563 1ta1:A (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1564 1ta1:A (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1565 1ta1:B (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1566 1ta1:B (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1567 1ta1:C (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1568 1ta1:C (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1569 1tbh:A (2.7) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1570 1tbh:A (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1571 1tbh:B (2.7) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1572 1tbh:B (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1573 1tbh:C (2.7) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1574 1tbh:C (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1575 1tbj:A (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1576 1tbj:A (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1577 1tbj:B (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1578 1tbj:B (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1579 1tbj:C (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1580 1tbj:C (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1581 1tbl:A (3.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1582 1tbl:A (3.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1583 1tbl:B (3.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1584 1tbl:B (3.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1585 1tbl:C (3.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1586 1tbl:C (3.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    1587 1tei:A (2.7) BS03 MN ? GO:0030246 ... P02866 9451027
    1588 1tei:B (2.7) BS04 MN ? GO:0030246 ... P02866 9451027
    1589 1tei:C (2.7) BS04 MN ? GO:0030246 ... P02866 9451027
    1590 1tei:D (2.7) BS04 MN ? GO:0030246 ... P02866 9451027
    1591 1tei:E (2.7) BS04 MN ? GO:0030246 ... P02866 9451027
    1592 1tei:F (2.7) BS04 MN ? GO:0030246 ... P02866 9451027
    1593 1tei:G (2.7) BS03 MN ? GO:0030246 ... P02866 9451027
    1594 1tei:H (2.7) BS03 MN ? GO:0030246 ... P02866 9451027
    1595 1tl7:A (2.8) BS01 MN 4.6.1.1 GO:0009190 ... P30803 15591060
    1596 1tl7:A (2.8) BS02 MN 4.6.1.1 GO:0009190 ... P30803 15591060
    1597 1tvy:A (2.3) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 15449940
    1598 1tvy:B (2.3) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 15449940
    1599 1tw5:A (2.3) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 15449940
    1600 1tw5:B (2.3) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 15449940

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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