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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 1of6:C (2.1) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1202 1of6:D (2.1) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1203 1of6:E (2.1) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1204 1of6:F (2.1) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1205 1of6:G (2.1) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1206 1of6:H (2.1) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1207 1ofb:A (2.01) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1208 1ofb:B (2.01) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1209 1ofq:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1210 1ofq:B (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1211 1ofq:C (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1212 1ofq:D (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1213 1ofr:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1214 1ofr:B (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1215 1ofr:C (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1216 1ofr:D (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1217 1ofr:E (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1218 1ofr:F (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1219 1ofr:G (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1220 1ofr:H (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1221 1ofs:A (1.8) BS02 MN ? GO:0030246 ... P02867 N/A
    1222 1ofs:C (1.8) BS02 MN ? GO:0030246 ... P02867 N/A
    1223 1og0:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1224 1og0:B (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1225 1og0:C (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1226 1og0:D (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1227 1og0:E (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1228 1og0:F (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1229 1og0:G (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1230 1og0:H (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1231 1oi8:A (2.1) BS01 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 15215524
    1232 1oi8:A (2.1) BS02 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 15215524
    1233 1oi8:B (2.1) BS01 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 15215524
    1234 1oi8:B (2.1) BS02 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 15215524
    1235 1ols:A (1.85) BS01 MN 1.2.4.4 GO:0003863 ... P12694 12902323
    1236 1olx:A (2.25) BS01 MN 1.2.4.4 GO:0003863 ... P12694 12902323
    1237 1on1:A (1.75) BS01 MN ? GO:0003677 ... P54512 12847518
    1238 1on1:A (1.75) BS02 MN ? GO:0003677 ... P54512 12847518
    1239 1on1:B (1.75) BS01 MN ? GO:0003677 ... P54512 12847518
    1240 1on1:B (1.75) BS02 MN ? GO:0003677 ... P54512 12847518
    1241 1on2:A (1.61) BS01 MN ? GO:0003677 ... P54512 12847518
    1242 1on2:B (1.61) BS01 MN ? GO:0003677 ... P54512 12847518
    1243 1ona:A (2.35) BS03 MN ? GO:0030246 ... P02866 8940035
    1244 1ona:B (2.35) BS04 MN ? GO:0030246 ... P02866 8940035
    1245 1ona:C (2.35) BS03 MN ? GO:0030246 ... P02866 8940035
    1246 1ona:D (2.35) BS03 MN ? GO:0030246 ... P02866 8940035
    1247 1ono:A (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    1248 1ono:B (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    1249 1onp:A (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    1250 1onp:B (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    1251 1oqm:B (2.1) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 11916963
    1252 1oqm:D (2.1) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 11916963
    1253 1ovr:A (2.99) BS01 MN N/A N/A N/A 16332076
    1254 1ovr:B (2.99) BS01 MN N/A N/A N/A 16332076
    1255 1ovr:C (2.99) BS01 MN N/A N/A N/A 16332076
    1256 1ovr:D (2.99) BS01 MN N/A N/A N/A 16332076
    1257 1ovr:D (2.99) BS02 MN N/A N/A N/A 16332076
    1258 1ow2:A (2.0) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 14696183
    1259 1ow2:B (2.0) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 14696183
    1260 1oyw:A (1.8) BS02 MN 5.6.2.4 GO:0003676 ... P15043 14517231
    1261 1oyy:A (2.5) BS02 MN 5.6.2.4 GO:0003676 ... P15043 14517231
    1262 1p3d:A (1.7) BS01 MN 6.3.2.8 GO:0005524 ... P45066 12837790
    1263 1p3d:B (1.7) BS01 MN 6.3.2.8 GO:0005524 ... P45066 12837790
    1264 1p8m:A (2.84) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1265 1p8m:A (2.84) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1266 1p8m:B (2.84) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1267 1p8m:B (2.84) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1268 1p8m:C (2.84) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1269 1p8m:C (2.84) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1270 1p8n:A (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1271 1p8n:B (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1272 1p8n:C (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1273 1p8o:A (2.96) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1274 1p8o:A (2.96) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1275 1p8o:B (2.96) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1276 1p8o:B (2.96) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1277 1p8o:C (2.96) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1278 1p8o:C (2.96) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1279 1p8p:A (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1280 1p8p:A (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1281 1p8p:B (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1282 1p8p:B (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1283 1p8p:C (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1284 1p8p:C (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1285 1p8q:A (2.95) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1286 1p8q:A (2.95) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1287 1p8q:B (2.95) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1288 1p8q:B (2.95) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1289 1p8q:C (2.95) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1290 1p8q:C (2.95) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1291 1p8r:A (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1292 1p8r:A (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1293 1p8r:B (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1294 1p8r:B (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1295 1p8s:A (3.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1296 1p8s:A (3.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1297 1p8s:B (3.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1298 1p8s:B (3.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1299 1p8s:C (3.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1300 1p8s:C (3.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    1301 1pdz:A (2.2) BS02 MN 4.2.1.11 GO:0000015 ... P56252 7547999
    1302 1pey:A (2.25) BS01 MN 2.7.-.- GO:0000160 ... P06628 15039551
    1303 1pey:B (2.25) BS01 MN 2.7.-.- GO:0000160 ... P06628 15039551
    1304 1pey:C (2.25) BS01 MN 2.7.-.- GO:0000160 ... P06628 15039551
    1305 1phk:A (2.2) BS01 MN 2.7.11.1
    2.7.11.19
    2.7.11.26    		 GO:0004672 ... P00518 7663944
    1306 1pj2:A (2.3) BS02 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1307 1pj2:B (2.3) BS02 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1308 1pj2:C (2.3) BS02 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1309 1pj2:D (2.3) BS03 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1310 1pj3:A (2.1) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1311 1pj3:B (2.1) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1312 1pj3:C (2.1) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1313 1pj3:D (2.1) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1314 1pj4:A (2.3) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1315 1pj4:B (2.3) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1316 1pj4:C (2.3) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1317 1pj4:D (2.3) BS01 MN 1.1.1.38 GO:0004470 ... P23368 12962632
    1318 1pkn:A (2.9) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 8193145
    1319 1pl4:A (1.47) BS01 MN 1.15.1.1 GO:0004784 ... P04179 14638684
    1320 1pl4:B (1.47) BS01 MN 1.15.1.1 GO:0004784 ... P04179 14638684
    1321 1pl4:C (1.47) BS01 MN 1.15.1.1 GO:0004784 ... P04179 14638684
    1322 1pl4:D (1.47) BS01 MN 1.15.1.1 GO:0004784 ... P04179 14638684
    1323 1pm2:A (1.8) BS01 MN 1.17.4.1 GO:0004748 ... P69924 14677973
    1324 1pm2:A (1.8) BS02 MN 1.17.4.1 GO:0004748 ... P69924 14677973
    1325 1pm2:B (1.8) BS01 MN 1.17.4.1 GO:0004748 ... P69924 14677973
    1326 1pm2:B (1.8) BS02 MN 1.17.4.1 GO:0004748 ... P69924 14677973
    1327 1ppv:A (1.7) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    1328 1ppv:B (1.7) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    1329 1ppw:A (2.21) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    1330 1ppw:B (2.21) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    1331 1pq3:A (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1332 1pq3:A (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1333 1pq3:B (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1334 1pq3:B (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1335 1pq3:C (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1336 1pq3:C (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1337 1pq3:D (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1338 1pq3:D (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1339 1pq3:E (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1340 1pq3:E (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1341 1pq3:F (2.7) BS01 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1342 1pq3:F (2.7) BS02 MN 3.5.3.1 GO:0004053 ... P78540 12859189
    1343 1pvf:A (1.78) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 N/A
    1344 1pvf:B (1.78) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 N/A
    1345 1pzy:B (2.3) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 12927542
    1346 1pzy:D (2.3) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 12927542
    1347 1q0p:A (1.8) BS01 MN 3.4.21.47 GO:0004252 ... P00751 15016353
    1348 1q54:A (1.93) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12630859
    1349 1q54:B (1.93) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12630859
    1350 1q79:A (2.15) BS01 MN 2.7.7.19 GO:0003723 ... P25500 15328606
    1351 1q79:A (2.15) BS02 MN 2.7.7.19 GO:0003723 ... P25500 15328606
    1352 1q8o:A (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    1353 1q8o:B (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    1354 1q8p:A (1.75) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    1355 1q8p:B (1.75) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    1356 1q8q:A (2.05) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    1357 1q8q:B (2.05) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    1358 1q8s:A (2.05) BS02 MN ? GO:0030246 ... Q8GSD2 14729339
    1359 1q8s:B (2.05) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    1360 1q8v:A (1.85) BS02 MN ? GO:0030246 ... Q8GSD2 14729339
    1361 1q8v:B (1.85) BS04 MN ? GO:0030246 ... Q8GSD2 14729339
    1362 1qb4:A (2.6) BS01 MN 4.1.1.31 GO:0000287 ... P00864 10481043
    1363 1qdc:A (2.0) BS03 MN ? GO:0005537 ... P55915 10506175
    1364 1qdc:B (2.0) BS03 MN ? GO:0005537 ... P55915 10506175
    1365 1qdc:C (2.0) BS03 MN ? GO:0005537 ... P55915 10506175
    1366 1qdc:D (2.0) BS03 MN ? GO:0005537 ... P55915 10506175
    1367 1qdo:A (2.8) BS02 MN ? GO:0005537 ... P55915 10506175
    1368 1qdo:B (2.8) BS02 MN ? GO:0005537 ... P55915 10506175
    1369 1qdo:C (2.8) BS02 MN ? GO:0005537 ... P55915 10506175
    1370 1qdo:D (2.8) BS02 MN ? GO:0005537 ... P55915 10506175
    1371 1qf3:A (2.8) BS03 MN ? GO:0030246 ... P02872 10417405
    1372 1qf3:B (2.8) BS03 MN ? GO:0030246 ... P02872 10417405
    1373 1qf3:C (2.8) BS03 MN ? GO:0030246 ... P02872 10417405
    1374 1qf3:D (2.8) BS03 MN ? GO:0030246 ... P02872 10417405
    1375 1qgl:A (2.66) BS01 MN ? GO:0030246 ... P02866 N/A
    1376 1qgl:B (2.66) BS02 MN ? GO:0030246 ... P02866 N/A
    1377 1qgq:A (1.5) BS01 MN ? GO:0016757 ... P39621 10350455
    1378 1qh3:A (1.9) BS05 MN 3.1.2.6 GO:0004416 ... Q16775 10508780
    1379 1qh3:B (1.9) BS06 MN 3.1.2.6 GO:0004416 ... Q16775 10508780
    1380 1ql6:A (2.4) BS02 MN 2.7.11.1
    2.7.11.19
    2.7.11.26    		 GO:0004672 ... P00518 10545198
    1381 1qle:A (3.0) BS05 MN 7.1.1.9 GO:0004129 ... P98002 10559205
    1382 1qmg:A (1.6) BS02 MN 1.1.1.86 GO:0004455 ... Q01292 10739911
    1383 1qmg:B (1.6) BS02 MN 1.1.1.86 GO:0004455 ... Q01292 10739911
    1384 1qmg:C (1.6) BS02 MN 1.1.1.86 GO:0004455 ... Q01292 10739911
    1385 1qmg:D (1.6) BS02 MN 1.1.1.86 GO:0004455 ... Q01292 10739911
    1386 1qmo:E (3.5) BS02 MN ? GO:0030246 ... Q9ZTA9 10843844
    1387 1qmo:F (3.5) BS02 MN ? GO:0030246 ... Q9ZTA9 10843844
    1388 1qmo:G (3.5) BS02 MN ? GO:0030246 ... Q9ZTA9 10843844
    1389 1qmo:H (3.5) BS02 MN ? GO:0030246 ... Q9ZTA9 10843844
    1390 1qnm:A (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537988
    1391 1qnm:B (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537988
    1392 1qnw:A (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    1393 1qnw:B (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    1394 1qnw:C (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    1395 1qnw:D (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    1396 1qny:A (1.8) BS01 MN ? GO:0030246 ... P02866 10771422
    1397 1qoo:A (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    1398 1qoo:B (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    1399 1qoo:C (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    1400 1qoo:D (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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