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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12601 8tbu:C (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    12602 8tbu:D (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    12603 8tbu:E (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    12604 8tbu:F (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    12605 8tbu:G (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    12606 8tbu:H (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    12607 8tcc:A (3.1) BS01 MN N/A GO:0003933 ... A0A069BB45 N/A
    12608 8tcg:B (3.4) BS01 MN ? N/A P18564 37704610
    12609 8tcg:B (3.4) BS02 MN ? N/A P18564 37704610
    12610 8tcg:B (3.4) BS03 MN ? N/A P18564 37704610
    12611 8tjc:A (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    12612 8tjc:B (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    12613 8tjc:C (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    12614 8tjc:D (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    12615 8u1x:C (2.7) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38150499
    12616 8u1x:C (2.7) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38150499
    12617 8u7b:C (2.66) BS01 MN ? N/A A0A1I7NFD7 38844755
    12618 8u89:C (3.3) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38150499
    12619 8u89:C (3.3) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38150499
    12620 8u9x:A (3.05) BS05 MN N/A N/A P04050 39190355
    12621 8u9x:A (3.05) BS06 MN N/A N/A P04050 39190355
    12622 8ucx:A (1.57) BS01 MN 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    12623 8uhz:A (2.55) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12624 8uhz:A (2.55) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12625 8ui1:A (2.91) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12626 8ui6:A (2.65) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12627 8ui6:A (2.65) BS04 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12628 8uje:A (2.5) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12629 8uje:A (2.5) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12630 8ujf:A (2.87) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12631 8ujf:A (2.87) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12632 8ujf:B (2.87) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12633 8ujf:B (2.87) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12634 8ujg:A (2.27) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12635 8ujg:A (2.27) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12636 8ujg:B (2.27) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12637 8ujg:B (2.27) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12638 8ujh:A (2.65) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12639 8ujh:A (2.65) BS04 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    12640 8umc:A (2.5) BS01 MN ? N/A A0A2I9DAN1 38508304
    12641 8umc:C (2.5) BS01 MN ? N/A A0A2I9DAN1 38508304
    12642 8uw0:A (0.93) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    12643 8uwb:C (3.15) BS01 MN ? GO:0004722 ... P30153 38582449
    12644 8uwb:C (3.15) BS02 MN ? GO:0004722 ... P30153 38582449
    12645 8uwb:F (3.15) BS01 MN ? GO:0004722 ... P30153 38582449
    12646 8uwb:F (3.15) BS02 MN ? GO:0004722 ... P30153 38582449
    12647 8ux7:A (2.2) BS01 MN ? GO:0005509 ... B3EWJ2 N/A
    12648 8ux7:B (2.2) BS01 MN ? GO:0005509 ... B3EWJ2 N/A
    12649 8v7f:A (2.2) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    12650 8v7f:A (2.2) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    12651 8v7k:A (1.65) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    12652 8v7k:A (1.65) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    12653 8v9q:A (2.29) BS04 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    12654 8v9q:B (2.29) BS03 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    12655 8vfa:A (2.05) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    12656 8vfa:A (2.05) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    12657 8vfb:A (2.64) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    12658 8vfb:A (2.64) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    12659 8vfd:A (2.1) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    12660 8vfd:A (2.1) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    12661 8vgz:A (2.09) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    12662 8vgz:A (2.09) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    12663 8vh7:A (1.982) BS02 MN N/A N/A Q5SGE1 N/A
    12664 8vh7:B (1.982) BS02 MN N/A N/A Q5SGE1 N/A
    12665 8vh8:A (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    12666 8vh8:B (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    12667 8vh8:C (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    12668 8vh8:D (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    12669 8vhw:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    12670 8vhw:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    12671 8vhy:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    12672 8vhy:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    12673 8vii:A (1.621) BS01 MN N/A N/A B1WTS6 39216472
    12674 8vii:B (1.621) BS01 MN N/A N/A B1WTS6 39216472
    12675 8viw:A (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    12676 8viw:B (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    12677 8viw:C (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    12678 8viw:D (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    12679 8vj0:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    12680 8vj0:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    12681 8vj4:A (1.68) BS01 MN N/A GO:0000302 ... P04179 38328249
    12682 8vj4:B (1.68) BS01 MN N/A GO:0000302 ... P04179 38328249
    12683 8vj5:A (1.76) BS01 MN N/A GO:0000302 ... P04179 38328249
    12684 8vj5:B (1.76) BS01 MN N/A GO:0000302 ... P04179 38328249
    12685 8vj8:A (1.7) BS01 MN N/A GO:0000302 ... P04179 38328249
    12686 8vj8:B (1.7) BS01 MN N/A GO:0000302 ... P04179 38328249
    12687 8wmg:A (1.97) BS04 MN ? GO:0030246 ... P02866 N/A
    12688 8wmg:B (1.97) BS01 MN ? GO:0030246 ... P02866 N/A
    12689 8wmk:A (2.17) BS03 MN ? GO:0030246 ... P02866 N/A
    12690 8wmk:B (2.17) BS01 MN ? GO:0030246 ... P02866 N/A
    12691 8wwu:A (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12692 8wwu:A (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12693 8wwu:B (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12694 8wwu:B (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12695 8wwu:C (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12696 8wwu:C (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12697 8wwu:D (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12698 8wwu:D (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12699 8wwu:E (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12700 8wwu:E (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12701 8wwu:F (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12702 8wwu:F (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12703 8wwv:A (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12704 8wwv:A (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12705 8wwv:B (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12706 8wwv:B (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12707 8wwv:C (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12708 8wwv:C (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12709 8wwv:D (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12710 8wwv:D (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12711 8wwv:E (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12712 8wwv:E (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12713 8wwv:F (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12714 8wwv:F (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    12715 8x3g:A (1.84) BS01 MN N/A N/A N/A 39033196
    12716 8x3g:A (1.84) BS02 MN N/A N/A N/A 39033196
    12717 8x3g:B (1.84) BS01 MN N/A N/A N/A 39033196
    12718 8x3g:B (1.84) BS02 MN N/A N/A N/A 39033196
    12719 8x6z:A (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    12720 8x6z:A (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    12721 8x6z:B (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    12722 8x6z:B (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    12723 8x6z:C (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    12724 8x6z:D (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    12725 8x6z:E (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    12726 8x6z:E (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    12727 8x6z:F (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    12728 8x6z:F (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    12729 8xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    12730 8xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    12731 8xlp:A (2.57) BS08 MN N/A GO:0005506 ... A6MVT2 N/A
    12732 8xlp:A (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    12733 8xlp:a (2.57) BS08 MN N/A GO:0005506 ... A6MVT2 N/A
    12734 8xlp:a (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    12735 8xx9:A (1.55) BS01 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    12736 8xxa:A (1.55) BS08 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    12737 9c4c:E (3.09) BS02 MN N/A N/A P54512 N/A
    12738 9c4c:E (3.09) BS03 MN N/A N/A P54512 N/A
    12739 9c4c:F (3.09) BS03 MN N/A N/A P54512 N/A
    12740 9c4c:F (3.09) BS04 MN N/A N/A P54512 N/A
    12741 9c4c:G (3.09) BS03 MN N/A N/A P54512 N/A
    12742 9c4c:G (3.09) BS04 MN N/A N/A P54512 N/A
    12743 9c4c:H (3.09) BS02 MN N/A N/A P54512 N/A
    12744 9c4c:H (3.09) BS03 MN N/A N/A P54512 N/A
    12745 9c4d:C (4.17) BS01 MN N/A N/A P54512 N/A
    12746 9c4d:C (4.17) BS02 MN N/A N/A P54512 N/A
    12747 9c4d:D (4.17) BS02 MN N/A N/A P54512 N/A
    12748 9c4d:D (4.17) BS03 MN N/A N/A P54512 N/A
    12749 9c4d:E (4.17) BS02 MN N/A N/A P54512 N/A
    12750 9c4d:E (4.17) BS03 MN N/A N/A P54512 N/A
    12751 9c4d:F (4.17) BS03 MN N/A N/A P54512 N/A
    12752 9c4d:F (4.17) BS04 MN N/A N/A P54512 N/A
    12753 9c4d:G (4.17) BS02 MN N/A N/A P54512 N/A
    12754 9c4d:G (4.17) BS03 MN N/A N/A P54512 N/A
    12755 9c4d:H (4.17) BS02 MN N/A N/A P54512 N/A
    12756 9c4d:H (4.17) BS03 MN N/A N/A P54512 N/A
    12757 9c4d:I (4.17) BS02 MN N/A N/A P54512 N/A
    12758 9c4d:I (4.17) BS03 MN N/A N/A P54512 N/A
    12759 9c4d:J (4.17) BS02 MN N/A N/A P54512 N/A
    12760 9c4d:J (4.17) BS03 MN N/A N/A P54512 N/A
    12761 9c4i:A (1.3) BS03 MN N/A GO:0005537 ... C0HK20 N/A
    12762 9c4i:B (1.3) BS04 MN N/A GO:0005537 ... C0HK20 N/A
    12763 9c9y:A (3.35) BS02 MN N/A N/A O95985 N/A
    12764 9c9y:A (3.35) BS03 MN N/A N/A O95985 N/A
    12765 9ca0:A (3.48) BS03 MN N/A N/A O95985 N/A
    12766 9ca1:A (3.26) BS03 MN N/A N/A O95985 N/A
    12767 9ca1:A (3.26) BS04 MN N/A N/A O95985 N/A
    12768 9ckv:B (3.19) BS01 MN N/A N/A P05556 N/A
    12769 9ckv:B (3.19) BS02 MN N/A N/A P05556 N/A
    12770 9ckv:B (3.19) BS03 MN N/A N/A P05556 N/A
    12771 9eng:A (2.2) BS01 MN N/A N/A A6T5R0 39236497
    12772 9eng:A (2.2) BS02 MN N/A N/A A6T5R0 39236497
    12773 9etk:A (1.48) BS01 MN N/A N/A A0A0H5Y1H1 N/A
    12774 9fek:A (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12775 9fek:B (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12776 9fek:C (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12777 9fek:D (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12778 9fek:E (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12779 9fek:F (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12780 9fek:G (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12781 9fek:H (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12782 9fek:I (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12783 9fek:J (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12784 9fek:K (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12785 9fek:L (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    12786 9ica:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    12787 9icl:A (2.8) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    12788 9icl:A (2.8) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    12789 9icq:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    12790 9icr:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    12791 9icr:A (3.0) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    12792 9ics:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    12793 9ict:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    12794 9iq9:A (1.58) BS01 MN N/A GO:0004053 ... D2Z025 N/A
    12795 9iq9:A (1.58) BS02 MN N/A GO:0004053 ... D2Z025 N/A
    12796 9xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    12797 9xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    12798 9xim:A (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    12799 9xim:A (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    12800 9xim:B (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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