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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 1lob:G (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    1002 1loc:A (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    1003 1loc:C (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    1004 1loc:E (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    1005 1loc:G (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    1006 1lod:A (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    1007 1lod:C (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    1008 1lod:E (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    1009 1lod:G (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    1010 1loe:A (1.9) BS02 MN ? GO:0005515 ... P04122 2380988
    1011 1loe:C (1.9) BS02 MN ? GO:0005515 ... P04122 2380988
    1012 1lof:A (2.3) BS03 MN ? GO:0005515 ... P04122 1730588
    1013 1lof:C (2.3) BS03 MN ? GO:0005515 ... P04122 1730588
    1014 1log:A (2.1) BS03 MN ? GO:0005515 ... P04122 2211692
    1015 1log:C (2.1) BS03 MN ? GO:0005515 ... P04122 2211692
    1016 1lqk:A (1.35) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    1017 1lqk:B (1.35) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    1018 1lqo:A (2.0) BS04 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    1019 1lqo:B (2.0) BS04 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    1020 1lqp:A (1.19) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    1021 1lqp:B (1.19) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    1022 1lt1:A (1.91) BS01 MN N/A N/A N/A 12569505
    1023 1lt1:B (1.91) BS01 MN N/A N/A N/A 12569505
    1024 1lt1:C (1.91) BS01 MN N/A N/A N/A 12569505
    1025 1lt1:D (1.91) BS01 MN N/A N/A N/A 12569505
    1026 1lt1:D (1.91) BS02 MN N/A N/A N/A 12569505
    1027 1lt1:E (1.91) BS01 MN N/A N/A N/A 12569505
    1028 1lt1:F (1.91) BS01 MN N/A N/A N/A 12569505
    1029 1lt1:G (1.91) BS01 MN N/A N/A N/A 12569505
    1030 1lt1:H (1.91) BS01 MN N/A N/A N/A 12569505
    1031 1lte:A (2.0) BS03 MN ? GO:0030246 ... P16404 1948067
    1032 1lu1:A (2.6) BS02 MN ? GO:0005537 ... P05045 10047489
    1033 1lu2:A (2.8) BS02 MN ? GO:0005537 ... P05045 10047489
    1034 1lu2:B (2.8) BS02 MN ? GO:0005537 ... P05045 10047489
    1035 1lul:A (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    1036 1lul:B (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    1037 1lul:C (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    1038 1lul:D (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    1039 1lul:E (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    1040 1lul:F (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    1041 1luv:A (1.85) BS01 MN 1.15.1.1 GO:0004784 ... P04179 12627943
    1042 1luv:B (1.85) BS01 MN 1.15.1.1 GO:0004784 ... P04179 12627943
    1043 1luw:A (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 12627943
    1044 1luw:B (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 12627943
    1045 1lv5:A (1.95) BS03 MN 2.7.7.7 GO:0003676 ... P52026 12649320
    1046 1lv5:B (1.95) BS03 MN 2.7.7.7 GO:0003676 ... P52026 12649320
    1047 1lzi:A (1.35) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12198488
    1048 1lzj:A (1.32) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12198488
    1049 1m0d:A (1.9) BS01 MN 3.1.21.2 GO:0003677 ... P00641 12093751
    1050 1m0d:B (1.9) BS01 MN 3.1.21.2 GO:0003677 ... P00641 12093751
    1051 1m0d:C (1.9) BS01 MN 3.1.21.2 GO:0003677 ... P00641 12093751
    1052 1m0d:D (1.9) BS01 MN 3.1.21.2 GO:0003677 ... P00641 12093751
    1053 1m1x:A (3.3) BS01 MN ? GO:0001525 ... P06756 11884718
    1054 1m1x:A (3.3) BS02 MN ? GO:0001525 ... P06756 11884718
    1055 1m1x:A (3.3) BS03 MN ? GO:0001525 ... P06756 11884718
    1056 1m1x:A (3.3) BS04 MN ? GO:0001525 ... P06756 11884718
    1057 1m1x:A (3.3) BS05 MN ? GO:0001525 ... P06756 11884718
    1058 1m1x:B (3.3) BS01 MN ? GO:0001618 ... P05106 11884718
    1059 1m35:A (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1060 1m35:A (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1061 1m35:B (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1062 1m35:B (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1063 1m35:C (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1064 1m35:C (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1065 1m35:D (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1066 1m35:D (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1067 1m35:E (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1068 1m35:E (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1069 1m35:F (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1070 1m35:F (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    1071 1m51:A (2.25) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 14552798
    1072 1m6p:A (1.8) BS01 MN ? GO:0005768 ... P11456 9604938
    1073 1m6v:A (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1074 1m6v:A (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1075 1m6v:A (2.1) BS03 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1076 1m6v:C (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1077 1m6v:C (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1078 1m6v:C (2.1) BS03 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1079 1m6v:E (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1080 1m6v:E (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1081 1m6v:E (2.1) BS03 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1082 1m6v:G (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1083 1m6v:G (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1084 1m6v:G (2.1) BS03 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 12130656
    1085 1mav:A (1.6) BS01 MN ? GO:0000160 ... Q9A5I4 12176983
    1086 1mav:A (1.6) BS02 MN ? GO:0000160 ... Q9A5I4 12176983
    1087 1mb0:A (2.0) BS01 MN ? GO:0000160 ... Q9A5I4 12176983
    1088 1mhp:A (2.8) BS01 MN ? N/A P18614 12662928
    1089 1mhp:B (2.8) BS01 MN ? N/A P18614 12662928
    1090 1mih:A (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    1091 1mih:B (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    1092 1mm8:A (2.8) BS03 MN 3.1.-.- GO:0003677 ... Q46731 12367522
    1093 1mm8:A (2.8) BS04 MN 3.1.-.- GO:0003677 ... Q46731 12367522
    1094 1mng:A (1.8) BS01 MN 1.15.1.1 GO:0004784 ... P61503 7849024
    1095 1mng:B (1.8) BS01 MN 1.15.1.1 GO:0004784 ... P61503 7849024
    1096 1mnp:A (2.0) BS03 MN 1.11.1.13 GO:0000302 ... Q02567 8182752
    1097 1mq9:A (2.0) BS01 MN ? N/A P20701 12526797
    1098 1mqw:A (2.3) BS01 MN 3.6.1.13 GO:0005829 ... O33199 12906832
    1099 1mqw:A (2.3) BS02 MN 3.6.1.13 GO:0005829 ... O33199 12906832
    1100 1mrr:A (2.5) BS01 MN 1.17.4.1 GO:0004748 ... P69924 1328209
    1101 1mrr:A (2.5) BS02 MN 1.17.4.1 GO:0004748 ... P69924 1328209
    1102 1mrr:B (2.5) BS01 MN 1.17.4.1 GO:0004748 ... P69924 1328209
    1103 1mrr:B (2.5) BS02 MN 1.17.4.1 GO:0004748 ... P69924 1328209
    1104 1msd:A (3.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 8495200
    1105 1msd:B (3.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 8495200
    1106 1muc:A (1.85) BS01 MN 5.5.1.1 GO:0003824 ... P08310 7500361
    1107 1muc:B (1.85) BS01 MN 5.5.1.1 GO:0003824 ... P08310 7500361
    1108 1muh:A (2.3) BS03 MN 3.1.-.- GO:0003677 ... Q46731 10884228
    1109 1mus:A (1.9) BS03 MN 3.1.-.- GO:0003677 ... Q46731 15102449
    1110 1mus:A (1.9) BS04 MN 3.1.-.- GO:0003677 ... Q46731 15102449
    1111 1muw:A (0.86) BS01 MN 5.3.1.5 GO:0000287 ... P15587 N/A
    1112 1muw:A (0.86) BS02 MN 5.3.1.5 GO:0000287 ... P15587 N/A
    1113 1mvo:A (1.6) BS01 MN ? GO:0000160 ... P13792 12486062
    1114 1mvq:A (1.77) BS03 MN ? GO:0030246 ... P83721 12966038
    1115 1mwh:A (2.5) BS01 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    1116 1n0j:A (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 1394426
    1117 1n0j:B (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 1394426
    1118 1n0n:A (1.82) BS01 MN 1.15.1.1 GO:0004784 ... P04179 N/A
    1119 1n0n:B (1.82) BS01 MN 1.15.1.1 GO:0004784 ... P04179 N/A
    1120 1n1h:A (2.8) BS02 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    1121 1n1h:A (2.8) BS03 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    1122 1n1p:A (0.95) BS01 MN 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 14558826
    1123 1n35:A (2.5) BS03 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    1124 1n35:A (2.5) BS04 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    1125 1n38:A (2.8) BS03 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    1126 1n38:A (2.8) BS04 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    1127 1n3o:A (2.0) BS02 MN ? GO:0030246 ... Q8GSD2 12595543
    1128 1n3o:B (2.0) BS02 MN ? GO:0030246 ... Q8GSD2 12595543
    1129 1n3p:A (2.1) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    1130 1n3p:B (2.1) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    1131 1n3q:A (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    1132 1n3q:B (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    1133 1n47:A (2.7) BS03 MN ? GO:0030246 ... P56625 12586347
    1134 1n47:B (2.7) BS03 MN ? GO:0030246 ... P56625 12586347
    1135 1n47:C (2.7) BS02 MN ? GO:0030246 ... P56625 12586347
    1136 1n47:D (2.7) BS02 MN ? GO:0030246 ... P56625 12586347
    1137 1n4w:A (0.92) BS01 MN 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 16604066
    1138 1n51:A (2.3) BS02 MN 3.4.11.9 GO:0004177 ... P15034 15388923
    1139 1n51:A (2.3) BS03 MN 3.4.11.9 GO:0004177 ... P15034 15388923
    1140 1n8f:A (1.75) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12667068
    1141 1n8f:B (1.75) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12667068
    1142 1n8f:C (1.75) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12667068
    1143 1n8f:D (1.75) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12667068
    1144 1nb6:A (2.6) BS01 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 12589751
    1145 1nb6:A (2.6) BS02 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 12589751
    1146 1nb6:B (2.6) BS01 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 12589751
    1147 1nb6:B (2.6) BS02 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 12589751
    1148 1nb7:B (2.9) BS02 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 12589751
    1149 1nb7:B (2.9) BS03 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 12589751
    1150 1ncy:A (2.1) BS01 MN ? GO:0003009 ... P02588 15299599
    1151 1ncy:A (2.1) BS02 MN ? GO:0003009 ... P02588 15299599
    1152 1nfs:A (1.96) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12540835
    1153 1nfs:B (1.96) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12540835
    1154 1nfz:A (1.97) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12540835
    1155 1nfz:B (1.97) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12540835
    1156 1nhx:A (2.1) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 14552798
    1157 1nkh:B (2.0) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 11419947
    1158 1nkh:D (2.0) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 11419947
    1159 1nki:A (0.95) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 15504029
    1160 1nki:B (0.95) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 15504029
    1161 1nls:A (0.94) BS01 MN ? GO:0030246 ... P02866 N/A
    1162 1nnr:A (2.25) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 15504029
    1163 1nnr:B (2.25) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 15504029
    1164 1nom:A (3.0) BS01 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06766 8841120
    1165 1noy:B (2.2) BS02 MN 2.7.7.7
    3.1.11.-
    GO:0003676 ... P04415 8679562
    1166 1nu5:A (1.95) BS01 MN 5.5.1.7 GO:0003824 ... P27099 12930985
    1167 1nu5:A (1.95) BS02 MN 5.5.1.7 GO:0003824 ... P27099 12930985
    1168 1nvm:A (1.7) BS01 MN 4.1.3.39 GO:0003824 ... P51016 12764229
    1169 1nvm:C (1.7) BS01 MN 4.1.3.39 GO:0003824 ... P51016 12764229
    1170 1nvm:E (1.7) BS01 MN 4.1.3.39 GO:0003824 ... P51016 12764229
    1171 1nvm:G (1.7) BS01 MN 4.1.3.39 GO:0003824 ... P51016 12764229
    1172 1nxd:1 (1.9) BS04 MN ? GO:0030246 ... P02866 15159564
    1173 1nxd:1 (1.9) BS05 MN ? GO:0030246 ... P02866 15159564
    1174 1nxd:2 (1.9) BS04 MN ? GO:0030246 ... P02866 15159564
    1175 1nxd:2 (1.9) BS05 MN ? GO:0030246 ... P02866 15159564
    1176 1nxd:3 (1.9) BS03 MN ? GO:0030246 ... P02866 15159564
    1177 1nxd:3 (1.9) BS04 MN ? GO:0030246 ... P02866 15159564
    1178 1nxd:4 (1.9) BS04 MN ? GO:0030246 ... P02866 15159564
    1179 1nxd:4 (1.9) BS05 MN ? GO:0030246 ... P02866 15159564
    1180 1o0r:A (2.3) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 12051854
    1181 1o0r:B (2.3) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 12051854
    1182 1o23:B (2.32) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 11485999
    1183 1o23:D (2.32) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 11485999
    1184 1o4t:A (1.95) BS01 MN ? GO:0030145 ... Q9X113 15211523
    1185 1o4t:B (1.95) BS01 MN ? GO:0030145 ... Q9X113 15211523
    1186 1o6k:A (1.7) BS03 MN 2.7.11.1 GO:0004672 ... P31751 12434148
    1187 1o6l:A (1.6) BS03 MN 2.7.11.1 GO:0004672 ... P31751 12434148
    1188 1o7o:A (1.97) BS03 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    1189 1o7o:B (1.97) BS03 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    1190 1o7q:A (1.3) BS02 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    1191 1o7q:B (1.3) BS02 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    1192 1o98:A (1.4) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    1193 1o98:A (1.4) BS02 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    1194 1o99:A (2.65) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    1195 1oab:A (1.9) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1196 1oab:B (1.9) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    1197 1oad:A (1.5) BS01 MN 5.3.1.5 GO:0000287 ... P24300 12777803
    1198 1oad:B (1.5) BS01 MN 5.3.1.5 GO:0000287 ... P24300 12777803
    1199 1of6:A (2.1) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    1200 1of6:B (2.1) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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