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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11401 7u7g:A (1.77) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11402 7u7i:A (1.57) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11403 7u7i:A (1.57) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11404 7u7j:A (1.58) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11405 7u7j:A (1.58) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11406 7u7k:A (1.67) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11407 7u7k:A (1.67) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11408 7u7y:A (1.78) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11409 7u7y:A (1.78) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11410 7u7z:A (1.67) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11411 7u7z:A (1.67) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11412 7u80:A (1.83) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11413 7u80:A (1.83) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11414 7u81:A (1.6) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11415 7u81:A (1.6) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11416 7u82:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11417 7u82:A (1.55) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11418 7u83:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11419 7u83:A (1.55) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11420 7u84:A (1.71) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11421 7u84:A (1.71) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    11422 7u8y:A (2.22) BS03 MN 3.1.11.2 GO:0003676 ... Q91XB0 N/A
    11423 7u8y:B (2.22) BS03 MN 3.1.11.2 GO:0003676 ... Q91XB0 N/A
    11424 7u9f:B (2.70001) BS01 MN ? N/A P05106 36113427
    11425 7u9f:B (2.70001) BS02 MN ? N/A P05106 36113427
    11426 7u9f:B (2.70001) BS03 MN ? N/A P05106 36113427
    11427 7u9f:D (2.70001) BS01 MN ? N/A P05106 36113427
    11428 7u9f:D (2.70001) BS02 MN ? N/A P05106 36113427
    11429 7u9f:D (2.70001) BS03 MN ? N/A P05106 36113427
    11430 7u9v:B (2.25492) BS01 MN ? N/A P05106 36113427
    11431 7u9v:B (2.25492) BS02 MN ? N/A P05106 36113427
    11432 7u9v:B (2.25492) BS03 MN ? N/A P05106 36113427
    11433 7u9v:D (2.25492) BS01 MN ? N/A P05106 36113427
    11434 7u9v:D (2.25492) BS02 MN ? N/A P05106 36113427
    11435 7u9v:D (2.25492) BS03 MN ? N/A P05106 36113427
    11436 7ubr:B (2.04993) BS01 MN ? N/A P05106 36113427
    11437 7ubr:B (2.04993) BS02 MN ? N/A P05106 36113427
    11438 7ubr:B (2.04993) BS03 MN ? N/A P05106 36113427
    11439 7ubr:D (2.04993) BS01 MN ? N/A P05106 36113427
    11440 7ubr:D (2.04993) BS02 MN ? N/A P05106 36113427
    11441 7ubr:D (2.04993) BS03 MN ? N/A P05106 36113427
    11442 7uby:A (2.1) BS02 MN 2.4.1.-
    3.4.22.-
    GO:0016757 ... P16154 36466927
    11443 7uby:B (2.1) BS02 MN 2.4.1.-
    3.4.22.-
    GO:0016757 ... P16154 36466927
    11444 7uch:A (2.18) BS01 MN ? N/A A0A1U7N2Z8 35594521
    11445 7uci:A (2.6) BS02 MN ? GO:0016747 ... B3EYF9 35594521
    11446 7uci:B (2.6) BS02 MN ? GO:0016747 ... B3EYF9 35594521
    11447 7ucl:A (2.09) BS01 MN ? GO:0016747 ... B3EYF9 35594521
    11448 7ucl:B (2.09) BS01 MN ? GO:0016747 ... B3EYF9 35594521
    11449 7ucy:B (2.34996) BS01 MN ? N/A P05106 36113427
    11450 7ucy:B (2.34996) BS02 MN ? N/A P05106 36113427
    11451 7ucy:B (2.34996) BS03 MN ? N/A P05106 36113427
    11452 7ucy:D (2.34996) BS01 MN ? N/A P05106 36113427
    11453 7ucy:D (2.34996) BS02 MN ? N/A P05106 36113427
    11454 7ucy:D (2.34996) BS03 MN ? N/A P05106 36113427
    11455 7udh:B (1.99999) BS01 MN ? N/A P05106 36113427
    11456 7udh:B (1.99999) BS02 MN ? N/A P05106 36113427
    11457 7udh:B (1.99999) BS03 MN ? N/A P05106 36113427
    11458 7udh:D (1.99999) BS01 MN ? N/A P05106 36113427
    11459 7udh:D (1.99999) BS02 MN ? N/A P05106 36113427
    11460 7udh:D (1.99999) BS03 MN ? N/A P05106 36113427
    11461 7uf1:A (1.95) BS01 MN 4.1.99.12 GO:0000287 ... Q9KKP2 35802469
    11462 7uf2:A (2.0) BS02 MN 4.1.99.12 GO:0000287 ... Q9KKP2 35802469
    11463 7uf3:A (2.0) BS02 MN 4.1.99.12 GO:0000287 ... Q9KKP2 35802469
    11464 7uf4:A (2.2) BS03 MN 4.1.99.12 GO:0000287 ... Q9KKP2 35802469
    11465 7uf5:A (2.1) BS03 MN 4.1.99.12 GO:0000287 ... Q9KKP2 35802469
    11466 7ufh:B (2.99768) BS01 MN ? N/A P05106 36113427
    11467 7ufh:B (2.99768) BS02 MN ? N/A P05106 36113427
    11468 7ufh:B (2.99768) BS03 MN ? N/A P05106 36113427
    11469 7ufh:D (2.99768) BS01 MN ? N/A P05106 36113427
    11470 7ufh:D (2.99768) BS02 MN ? N/A P05106 36113427
    11471 7ufh:D (2.99768) BS03 MN ? N/A P05106 36113427
    11472 7ug9:A (1.69) BS01 MN 3.1.13.-
    3.1.3.97
    GO:0000166 ... P77766 35904778
    11473 7ug9:A (1.69) BS02 MN 3.1.13.-
    3.1.3.97
    GO:0000166 ... P77766 35904778
    11474 7ug9:A (1.69) BS03 MN 3.1.13.-
    3.1.3.97
    GO:0000166 ... P77766 35904778
    11475 7uh8:B (2.75002) BS01 MN ? N/A P05106 36113427
    11476 7uh8:B (2.75002) BS02 MN ? N/A P05106 36113427
    11477 7uh8:B (2.75002) BS03 MN ? N/A P05106 36113427
    11478 7uh8:D (2.75002) BS01 MN ? N/A P05106 36113427
    11479 7uh8:D (2.75002) BS02 MN ? N/A P05106 36113427
    11480 7uh8:D (2.75002) BS03 MN ? N/A P05106 36113427
    11481 7ui6:A (3.7) BS01 MN 2.4.-.-
    2.4.1.-
    2.4.2.-
    GO:0000139 ... O95461 N/A
    11482 7ui6:A (3.7) BS02 MN 2.4.-.-
    2.4.1.-
    2.4.2.-
    GO:0000139 ... O95461 N/A
    11483 7ui6:B (3.7) BS01 MN 2.4.-.-
    2.4.1.-
    2.4.2.-
    GO:0000139 ... O95461 N/A
    11484 7ui7:A (3.4) BS01 MN 2.4.-.-
    2.4.1.-
    2.4.2.-
    GO:0000139 ... O95461 N/A
    11485 7ui7:A (3.4) BS02 MN 2.4.-.-
    2.4.1.-
    2.4.2.-
    GO:0000139 ... O95461 N/A
    11486 7uje:B (2.49997) BS01 MN ? N/A P05106 36113427
    11487 7uje:B (2.49997) BS02 MN ? N/A P05106 36113427
    11488 7uje:B (2.49997) BS03 MN ? N/A P05106 36113427
    11489 7uje:D (2.49997) BS01 MN ? N/A P05106 36113427
    11490 7uje:D (2.49997) BS02 MN ? N/A P05106 36113427
    11491 7uje:D (2.49997) BS03 MN ? N/A P05106 36113427
    11492 7uk9:B (2.60002) BS01 MN ? N/A P05106 36113427
    11493 7uk9:B (2.60002) BS02 MN ? N/A P05106 36113427
    11494 7uk9:B (2.60002) BS03 MN ? N/A P05106 36113427
    11495 7uk9:D (2.60002) BS01 MN ? N/A P05106 36113427
    11496 7uk9:D (2.60002) BS02 MN ? N/A P05106 36113427
    11497 7uk9:D (2.60002) BS03 MN ? N/A P05106 36113427
    11498 7uko:B (2.604) BS01 MN ? N/A P05106 36113427
    11499 7uko:B (2.604) BS02 MN ? N/A P05106 36113427
    11500 7uko:B (2.604) BS03 MN ? N/A P05106 36113427
    11501 7uko:D (2.604) BS01 MN ? N/A P05106 36113427
    11502 7uko:D (2.604) BS02 MN ? N/A P05106 36113427
    11503 7uko:D (2.604) BS03 MN ? N/A P05106 36113427
    11504 7ukp:B (2.80113) BS01 MN ? N/A P05106 36113427
    11505 7ukp:B (2.80113) BS02 MN ? N/A P05106 36113427
    11506 7ukp:D (2.80113) BS01 MN ? N/A P05106 36113427
    11507 7ukp:D (2.80113) BS02 MN ? N/A P05106 36113427
    11508 7ukt:B (2.36994) BS01 MN ? N/A P05106 36113427
    11509 7ukt:B (2.36994) BS02 MN ? N/A P05106 36113427
    11510 7ukt:B (2.36994) BS03 MN ? N/A P05106 36113427
    11511 7ukt:D (2.36994) BS01 MN ? N/A P05106 36113427
    11512 7ukt:D (2.36994) BS02 MN ? N/A P05106 36113427
    11513 7ukt:D (2.36994) BS03 MN ? N/A P05106 36113427
    11514 7uld:A (1.3) BS02 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 N/A
    11515 7uld:A (1.3) BS03 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 N/A
    11516 7ule:A (1.7) BS03 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 N/A
    11517 7ule:A (1.7) BS04 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 N/A
    11518 7ulf:A (1.61) BS03 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 N/A
    11519 7ulf:A (1.61) BS04 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 N/A
    11520 7umr:A (2.53) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    11521 7umr:A (2.53) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    11522 7un2:A (1.8) BS02 MN ? GO:0030246 ... A0A6M6R659
    A0A8E6Z6W6
    N/A
    11523 7un2:B (1.8) BS02 MN ? GO:0030246 ... A0A6M6R659
    A0A8E6Z6W6
    N/A
    11524 7uod:A (1.6) BS03 MN ? GO:0030246 ... A0A6M6R659
    A0A8E6Z6W6
    N/A
    11525 7uod:B (1.6) BS03 MN ? GO:0030246 ... A0A6M6R659
    A0A8E6Z6W6
    N/A
    11526 7upi:B (2.89) BS01 MN 3.1.3.16 GO:0000164 ... P62136 35831509
    11527 7upi:B (2.89) BS02 MN 3.1.3.16 GO:0000164 ... P62136 35831509
    11528 7uq3:A (1.49) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 36450832
    11529 7utt:A (2.04) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    11530 7utt:A (2.04) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    11531 7utt:C (2.04) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    11532 7utt:C (2.04) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    11533 7uuh:A (2.89) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    11534 7uuh:A (2.89) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    11535 7uzr:A (2.7) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    11536 7uzr:A (2.7) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    11537 7uzr:C (2.7) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    11538 7uzr:C (2.7) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    11539 7v04:A (1.91) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    11540 7v04:A (1.91) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    11541 7v0c:A (2.57) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    11542 7v0c:A (2.57) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    11543 7v0c:C (2.57) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    11544 7v0c:C (2.57) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    11545 7v0w:A (2.66) BS06 MN 2.7.7.86 N/A Q8C6L5 N/A
    11546 7v0w:C (2.66) BS06 MN 2.7.7.86 N/A Q8C6L5 N/A
    11547 7v4g:A (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11548 7v4g:B (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11549 7v4g:C (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11550 7va3:A (1.8) BS02 MN 3.1.15.- GO:0000175 ... P57665 N/A
    11551 7vg8:A (2.04) BS02 MN 3.1.21.- GO:0005198 ... H6WA92 N/A
    11552 7vjv:A (1.75) BS01 MN 1.14.11.- GO:0005515 ... Q3KRA9 35120926
    11553 7vpn:A (2.6) BS01 MN ? GO:0046872 ... A8P1J0 35654845
    11554 7vpn:B (2.6) BS01 MN ? GO:0046872 ... A8P1J0 35654845
    11555 7vpn:C (2.6) BS01 MN ? GO:0046872 ... A8P1J0 35654845
    11556 7vpn:D (2.6) BS01 MN ? GO:0046872 ... A8P1J0 35654845
    11557 7w5p:A (2.3) BS03 MN ? GO:0046872 ... A8P1J0 35654845
    11558 7w5p:D (2.3) BS03 MN ? GO:0046872 ... A8P1J0 35654845
    11559 7w5p:G (2.3) BS03 MN ? GO:0046872 ... A8P1J0 35654845
    11560 7w5p:H (2.3) BS03 MN ? GO:0046872 ... A8P1J0 35654845
    11561 7w6w:A (1.94) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11562 7w6w:B (1.94) BS02 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11563 7w6w:C (1.94) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11564 7w6w:D (1.94) BS02 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11565 7w79:A (3.1) BS02 MN ? GO:0005524 ... Q6NEF2 35767641
    11566 7w79:A (3.1) BS03 MN ? GO:0005524 ... Q6NEF2 35767641
    11567 7w79:A (3.1) BS04 MN ? GO:0005524 ... Q6NEF2 35767641
    11568 7wao:A (2.582) BS01 MN 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    11569 7wao:A (2.582) BS02 MN 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    11570 7wcv:A (2.3) BS02 MN 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 35793358
    11571 7wh4:A (2.8) BS01 MN ? GO:0003677 ... I6X7F9 N/A
    11572 7wh4:B (2.8) BS01 MN ? GO:0003677 ... I6X7F9 N/A
    11573 7wkv:A (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11574 7wkv:C (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11575 7wkv:E (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11576 7wl0:A (2.5) BS03 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11577 7wl0:C (2.5) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11578 7wl0:E (2.5) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11579 7wl0:G (2.5) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11580 7wl0:I (2.5) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    11581 7wnk:A (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11582 7wnk:B (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11583 7wnk:C (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11584 7wnk:D (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11585 7wnl:A (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11586 7wnl:B (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11587 7wnl:C (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11588 7wnl:D (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    11589 7ww6:A (1.36) BS03 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    11590 7ww7:A (1.67) BS03 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    11591 7ww7:A (1.67) BS04 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    11592 7ww8:A (1.64) BS03 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    11593 7ww8:A (1.64) BS04 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    11594 7ww9:A (1.8) BS03 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    11595 7ww9:A (1.8) BS04 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    11596 7wwa:A (1.9) BS03 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    11597 7x11:A (2.07) BS01 MN 1.1.1.40 GO:0000287 ... P48163 35819845
    11598 7x11:B (2.07) BS01 MN 1.1.1.40 GO:0000287 ... P48163 35819845
    11599 7x11:C (2.07) BS01 MN 1.1.1.40 GO:0000287 ... P48163 35819845
    11600 7x11:D (2.07) BS01 MN 1.1.1.40 GO:0000287 ... P48163 35819845

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218