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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11001 7mg1:A (2.0) BS01 MN ? GO:0030246 ... P02866 34096291
    11002 7mg2:A (1.8) BS01 MN ? GO:0030246 ... P02866 34096291
    11003 7mg3:A (1.6) BS01 MN ? GO:0030246 ... P02866 34096291
    11004 7mg4:A (2.0) BS01 MN ? GO:0030246 ... P02866 34096291
    11005 7mg5:A (2.1) BS01 MN ? GO:0030246 ... P02866 34096291
    11006 7mg5:B (2.1) BS01 MN ? GO:0030246 ... P02866 34096291
    11007 7mg6:A (1.7) BS01 MN ? GO:0030246 ... P02866 34096291
    11008 7mg6:B (1.7) BS01 MN ? GO:0030246 ... P02866 34096291
    11009 7mg7:A (1.75) BS01 MN ? GO:0030246 ... P02866 34096291
    11010 7mg7:B (1.75) BS01 MN ? GO:0030246 ... P02866 34096291
    11011 7mg8:A (3.0) BS01 MN ? GO:0030246 ... P02866 34096291
    11012 7mg8:B (3.0) BS01 MN ? GO:0030246 ... P02866 34096291
    11013 7mg9:A (2.55) BS01 MN ? GO:0030246 ... P02866 34096291
    11014 7mg9:B (2.55) BS01 MN ? GO:0030246 ... P02866 34096291
    11015 7mga:A (2.0) BS01 MN ? GO:0030246 ... P02866 34096291
    11016 7mga:B (2.0) BS01 MN ? GO:0030246 ... P02866 34096291
    11017 7mgb:A (2.45) BS02 MN ? GO:0030246 ... P02866 34096291
    11018 7mgb:B (2.45) BS02 MN ? GO:0030246 ... P02866 34096291
    11019 7mgb:C (2.45) BS02 MN ? GO:0030246 ... P02866 34096291
    11020 7mgb:D (2.45) BS02 MN ? GO:0030246 ... P02866 34096291
    11021 7mgc:A (2.92) BS02 MN ? GO:0030246 ... P02866 34096291
    11022 7mgc:B (2.92) BS02 MN ? GO:0030246 ... P02866 34096291
    11023 7mgc:C (2.92) BS02 MN ? GO:0030246 ... P02866 34096291
    11024 7mgc:D (2.92) BS02 MN ? GO:0030246 ... P02866 34096291
    11025 7mgd:A (2.05) BS01 MN ? GO:0030246 ... P02866 34096291
    11026 7mgd:B (2.05) BS01 MN ? GO:0030246 ... P02866 34096291
    11027 7mgd:C (2.05) BS01 MN ? GO:0030246 ... P02866 34096291
    11028 7mgd:D (2.05) BS01 MN ? GO:0030246 ... P02866 34096291
    11029 7mi4:A (3.2) BS04 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11030 7mi4:A (3.2) BS05 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11031 7mi4:B (3.2) BS03 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11032 7mi4:C (3.2) BS04 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11033 7mi4:C (3.2) BS05 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11034 7mi4:D (3.2) BS03 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11035 7mi4:E (3.2) BS03 MN 3.1.-.- GO:0003674 ... Q74H35 34588691
    11036 7mi4:F (3.2) BS02 MN 3.1.-.- GO:0003674 ... Q74H35 34588691
    11037 7mi5:A (3.57) BS04 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11038 7mi5:A (3.57) BS05 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11039 7mi5:B (3.57) BS03 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11040 7mi5:D (3.57) BS03 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11041 7mi5:E (3.57) BS03 MN 3.1.-.- GO:0003674 ... Q74H35 34588691
    11042 7mi5:F (3.57) BS03 MN 3.1.-.- GO:0003674 ... Q74H35 34588691
    11043 7mid:A (3.56) BS04 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11044 7mid:A (3.56) BS05 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11045 7mid:B (3.56) BS03 MN 3.1.-.-
    3.1.12.1
    GO:0003676 ... Q74H36 34588691
    11046 7mid:C (3.56) BS03 MN 3.1.-.- GO:0003674 ... Q74H35 34588691
    11047 7mid:D (3.56) BS02 MN 3.1.-.- GO:0003674 ... Q74H35 34588691
    11048 7ml8:A (2.7) BS04 MN 3.1.-.- GO:0003723 ... C3W5S0 N/A
    11049 7ml8:A (2.7) BS05 MN 3.1.-.- GO:0003723 ... C3W5S0 N/A
    11050 7mpf:A (2.8) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11051 7mpf:A (2.8) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11052 7mpq:A (2.35) BS03 MN ? GO:0003676 ... X5MEI1 34533457
    11053 7mpq:A (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    11054 7mpq:C (2.35) BS02 MN ? GO:0003676 ... X5MEI1 34533457
    11055 7mpq:C (2.35) BS03 MN ? GO:0003676 ... X5MEI1 34533457
    11056 7mpq:E (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    11057 7mpq:E (2.35) BS05 MN ? GO:0003676 ... X5MEI1 34533457
    11058 7mpq:G (2.35) BS02 MN ? GO:0003676 ... X5MEI1 34533457
    11059 7mpq:G (2.35) BS03 MN ? GO:0003676 ... X5MEI1 34533457
    11060 7mpq:I (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    11061 7mpq:I (2.35) BS05 MN ? GO:0003676 ... X5MEI1 34533457
    11062 7mpq:K (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    11063 7mpq:K (2.35) BS05 MN ? GO:0003676 ... X5MEI1 34533457
    11064 7mpq:M (2.35) BS03 MN ? GO:0003676 ... X5MEI1 34533457
    11065 7mpq:M (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    11066 7mpq:O (2.35) BS04 MN ? GO:0003676 ... X5MEI1 34533457
    11067 7mpq:O (2.35) BS05 MN ? GO:0003676 ... X5MEI1 34533457
    11068 7mty:A (2.38) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11069 7mty:A (2.38) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11070 7mvs:A (2.60137) BS03 MN 5.6.2.2 GO:0003677 ... P0A0K8
    P20831
    34614347
    11071 7mvs:B (2.60137) BS03 MN 5.6.2.2 GO:0003677 ... P0A0K8
    P20831
    34614347
    11072 7mx0:A (2.48) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 N/A
    11073 7mx0:A (2.48) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 N/A
    11074 7mxq:Z (3.23) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11075 7mxr:Z (3.101) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11076 7mxs:Z (2.798) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11077 7mxs:Z (2.798) BS04 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11078 7mxs:Z (2.798) BS05 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11079 7mxs:Z (2.798) BS06 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11080 7mxt:Z (3.048) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11081 7mxt:Z (3.048) BS04 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11082 7mxu:Z (3.042) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11083 7mxu:Z (3.042) BS04 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11084 7mxv:Z (2.211) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11085 7mxv:Z (2.211) BS04 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11086 7mxx:Z (2.85) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11087 7mxx:Z (2.85) BS04 MN 3.1.-.- GO:0003677 ... Q9UQ84 N/A
    11088 7my5:A (2.38) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 N/A
    11089 7my5:A (2.38) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 N/A
    11090 7n02:A (2.35) BS01 MN 3.4.13.9 GO:0004177 ... A8WBX8 28179139
    11091 7n02:A (2.35) BS02 MN 3.4.13.9 GO:0004177 ... A8WBX8 28179139
    11092 7n02:B (2.35) BS01 MN 3.4.13.9 GO:0004177 ... A8WBX8 28179139
    11093 7n02:B (2.35) BS02 MN 3.4.13.9 GO:0004177 ... A8WBX8 28179139
    11094 7n0z:A (2.19) BS01 MN 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    11095 7n0z:A (2.19) BS02 MN 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    11096 7n0z:A (2.19) BS03 MN 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    11097 7n0z:B (2.19) BS01 MN 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    11098 7n0z:B (2.19) BS02 MN 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    11099 7n0z:B (2.19) BS03 MN 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    11100 7n47:A (2.37) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11101 7n47:A (2.37) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11102 7n55:A (2.33) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11103 7n55:A (2.33) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11104 7n68:A (2.26) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11105 7n68:A (2.26) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11106 7n7g:A (2.0) BS01 MN ? GO:0005737 ... F1C939 34882867
    11107 7n7g:B (2.0) BS02 MN ? GO:0005737 ... F1C939 34882867
    11108 7n8f:A (2.35) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11109 7n8f:A (2.35) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    11110 7ne6:A (2.3) BS06 MN 1.14.11.80 GO:0006211 ... Q6N021 36070377
    11111 7ney:A (1.74) BS02 MN 4.1.1.102 GO:0005737 ... G9NLP8 34489427
    11112 7ney:B (1.74) BS02 MN 4.1.1.102 GO:0005737 ... G9NLP8 34489427
    11113 7nf0:A (1.35) BS02 MN 4.1.1.102 GO:0005737 ... G9NLP8 34489427
    11114 7nf0:B (1.35) BS02 MN 4.1.1.102 GO:0005737 ... G9NLP8 34489427
    11115 7nf1:A (1.77) BS02 MN 4.1.1.102 GO:0005737 ... G9NLP8 34489427
    11116 7nf1:B (1.77) BS02 MN 4.1.1.102 GO:0005737 ... G9NLP8 34489427
    11117 7nf2:A (1.33) BS02 MN 4.1.1.102 GO:0005737 ... G9NLP8 34489427
    11118 7nf2:B (1.33) BS02 MN 4.1.1.102 GO:0005737 ... G9NLP8 34489427
    11119 7nf3:A (1.1) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 34489427
    11120 7nf4:A (1.69) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 34489427
    11121 7nf4:B (1.69) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 34489427
    11122 7nho:A (2.66) BS02 MN 1.10.3.9 GO:0005506 ... P0A444 33846594
    11123 7nhp:A (2.72) BS03 MN 1.10.3.9 GO:0005506 ... P0A444 33846594
    11124 7nqe:A (1.28) BS02 MN ? N/A H2J4R1 35508653
    11125 7nqe:A (1.28) BS03 MN ? N/A H2J4R1 35508653
    11126 7nro:A (1.25) BS02 MN 1.14.11.33 GO:0005515 ... P05050 34762429
    11127 7nug:A (1.9) BS01 MN 3.1.-.- GO:0003723 ... C3W5X6 34299354
    11128 7nug:A (1.9) BS02 MN 3.1.-.- GO:0003723 ... C3W5X6 34299354
    11129 7nuh:A (2.2) BS01 MN 3.1.-.- GO:0003723 ... C3W5X6 34299354
    11130 7nuh:A (2.2) BS02 MN 3.1.-.- GO:0003723 ... C3W5X6 34299354
    11131 7nwl:A (3.1) BS01 MN ? GO:0001525 ... P08648 33962943
    11132 7nwl:A (3.1) BS02 MN ? GO:0001525 ... P08648 33962943
    11133 7nwl:A (3.1) BS03 MN ? GO:0001525 ... P08648 33962943
    11134 7nwl:A (3.1) BS04 MN ? GO:0001525 ... P08648 33962943
    11135 7nwl:B (3.1) BS01 MN ? GO:0000082 ... P05556 33962943
    11136 7nwl:B (3.1) BS02 MN ? GO:0000082 ... P05556 33962943
    11137 7nwl:B (3.1) BS03 MN ? GO:0000082 ... P05556 33962943
    11138 7nzm:B (3.96) BS01 MN 3.1.3.16 GO:0016787 ... P62139 34625748
    11139 7nzo:AAA (1.67) BS01 MN 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    11140 7nzo:BBB (1.67) BS01 MN 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    11141 7nzp:AAA (1.345) BS02 MN 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    11142 7nzp:BBB (1.345) BS02 MN 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    11143 7nzq:AAA (1.57) BS02 MN 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    11144 7o5r:A (1.65) BS01 MN N/A GO:0003824 ... N/A 36214476
    11145 7o5r:A (1.65) BS02 MN N/A GO:0003824 ... N/A 36214476
    11146 7o5r:B (1.65) BS01 MN N/A GO:0003824 ... N/A 36214476
    11147 7o91:A (1.1) BS01 MN ? GO:0016491 ... F9VPE5 34757735
    11148 7o91:A (1.1) BS02 MN ? GO:0016491 ... F9VPE5 34757735
    11149 7o91:B (1.1) BS01 MN ? GO:0016491 ... F9VPE5 34757735
    11150 7o91:B (1.1) BS02 MN ? GO:0016491 ... F9VPE5 34757735
    11151 7o91:C (1.1) BS01 MN ? GO:0016491 ... F9VPE5 34757735
    11152 7o91:C (1.1) BS02 MN ? GO:0016491 ... F9VPE5 34757735
    11153 7o93:A (1.17) BS01 MN ? GO:0016491 ... F9VPE5 34757735
    11154 7o93:A (1.17) BS02 MN ? GO:0016491 ... F9VPE5 34757735
    11155 7o93:B (1.17) BS02 MN ? GO:0016491 ... F9VPE5 34757735
    11156 7o93:B (1.17) BS03 MN ? GO:0016491 ... F9VPE5 34757735
    11157 7oa4:AAA (2.9) BS02 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    11158 7oa4:AAA (2.9) BS03 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    11159 7oa4:BBB (2.9) BS02 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    11160 7oa4:BBB (2.9) BS03 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    11161 7oa4:DDD (2.9) BS02 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    11162 7oa4:DDD (2.9) BS03 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    11163 7oa4:GGG (2.9) BS02 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    11164 7oa4:GGG (2.9) BS03 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    11165 7obe:A (3.0) BS01 MN 3.1.3.16 GO:0004721 ... Q84XU2 34721460
    11166 7obe:A (3.0) BS02 MN 3.1.3.16 GO:0004721 ... Q84XU2 34721460
    11167 7obe:B (3.0) BS01 MN 3.1.3.16 GO:0004721 ... Q84XU2 34721460
    11168 7obe:B (3.0) BS02 MN 3.1.3.16 GO:0004721 ... Q84XU2 34721460
    11169 7ody:A (1.43) BS02 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11170 7ody:A (1.43) BS03 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11171 7ody:A (1.43) BS04 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11172 7ody:B (1.43) BS03 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11173 7ody:B (1.43) BS04 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11174 7ody:B (1.43) BS05 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11175 7ody:C (1.43) BS02 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11176 7ody:C (1.43) BS03 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11177 7ody:C (1.43) BS04 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11178 7ody:D (1.43) BS03 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11179 7ody:D (1.43) BS04 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11180 7ody:D (1.43) BS05 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    11181 7ohg:A (2.507) BS02 MN ? GO:0015969 ... Q5SHL3 N/A
    11182 7oiw:A (2.63) BS04 MN 2.7.6.5 GO:0015969 ... Q931Q4 N/A
    11183 7oiw:B (2.63) BS03 MN 2.7.6.5 GO:0015969 ... Q931Q4 N/A
    11184 7oj5:A (2.4) BS01 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11185 7oj5:A (2.4) BS02 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11186 7oj5:B (2.4) BS01 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11187 7oj5:B (2.4) BS02 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11188 7oj5:C (2.4) BS01 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11189 7oj5:C (2.4) BS02 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11190 7oj5:D (2.4) BS01 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11191 7oj5:D (2.4) BS02 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11192 7oj5:E (2.4) BS01 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11193 7oj5:E (2.4) BS02 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11194 7oj5:F (2.4) BS01 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11195 7oj5:F (2.4) BS02 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11196 7oj5:G (2.4) BS01 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11197 7oj5:G (2.4) BS02 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11198 7oj5:H (2.4) BS01 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11199 7oj5:H (2.4) BS02 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A
    11200 7oj5:I (2.4) BS01 MN 4.2.1.19 GO:0000105 ... A0A072VQG6 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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