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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9801 6t7n:AAAA (1.9) BS01 MN ? GO:0004659 ... Q8WS26 N/A
    9802 6t7n:AAAA (1.9) BS02 MN ? GO:0004659 ... Q8WS26 N/A
    9803 6te3:A (2.3) BS04 MN 1.14.11.4
    2.4.1.50
    2.4.1.66
    GO:0001701 ... O60568 N/A
    9804 6tec:A (2.4) BS05 MN 1.14.11.4
    2.4.1.50
    2.4.1.66
    GO:0001701 ... O60568 N/A
    9805 6tes:A (2.2) BS04 MN 1.14.11.4
    2.4.1.50
    2.4.1.66
    GO:0001701 ... O60568 N/A
    9806 6teu:A (3.0) BS04 MN 1.14.11.4
    2.4.1.50
    2.4.1.66
    GO:0001701 ... O60568 N/A
    9807 6tex:A (2.3) BS05 MN 1.14.11.4
    2.4.1.50
    2.4.1.66
    GO:0001701 ... O60568 N/A
    9808 6tez:A (2.7) BS05 MN 1.14.11.4
    2.4.1.50
    2.4.1.66
    GO:0001701 ... O60568 N/A
    9809 6tib:AAA (1.07) BS01 MN 4.1.1.102 GO:0005737 ... A0A3F3RNU4 32719558
    9810 6tic:AAA (1.281) BS01 MN 4.1.1.102 GO:0005737 ... A0A3F3RNU4 32719558
    9811 6tie:AAA (1.06) BS01 MN 4.1.1.102 GO:0005737 ... A0A3F3RNU4 32719558
    9812 6tih:AAA (1.021) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 32719558
    9813 6tij:AAA (1.12) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 32719558
    9814 6til:AAA (1.42) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 32719558
    9815 6tin:AAA (1.28) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 32719558
    9816 6tio:AAA (1.54) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 32719558
    9817 6tqv:A (1.35001) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9818 6tqv:A (1.35001) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9819 6tqv:B (1.35001) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9820 6tqv:B (1.35001) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9821 6tqw:A (1.55) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9822 6tqw:A (1.55) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9823 6tqw:B (1.55) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9824 6tqw:B (1.55) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9825 6tqy:A (1.77) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9826 6tqy:A (1.77) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9827 6tqy:B (1.77) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9828 6tqy:B (1.77) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9829 6tqz:A (2.09933) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9830 6tqz:B (2.09933) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    9831 6tsq:AAA (1.85) BS07 MN ? GO:0046872 ... Q8X123 34235469
    9832 6tsq:AAA (1.85) BS08 MN ? GO:0046872 ... Q8X123 34235469
    9833 6tsq:AAA (1.85) BS10 MN ? GO:0046872 ... Q8X123 34235469
    9834 6tsr:AAA (1.85) BS09 MN ? GO:0046872 ... Q8X123 34235469
    9835 6tsr:AAA (1.85) BS10 MN ? GO:0046872 ... Q8X123 34235469
    9836 6tt9:AAA (1.9) BS02 MN ? GO:0030246 ... Q40750 32340396
    9837 6tt9:BBB (1.9) BS02 MN ? GO:0030246 ... Q40750 32340396
    9838 6tt9:CCC (1.9) BS02 MN ? GO:0030246 ... Q40750 32340396
    9839 6tt9:DDD (1.9) BS02 MN ? GO:0030246 ... Q40750 32340396
    9840 6tvv:A (2.8) BS01 MN ? GO:0003676 ... Q58241 N/A
    9841 6tvv:A (2.8) BS02 MN ? GO:0003676 ... Q58241 N/A
    9842 6tvv:B (2.8) BS01 MN ? GO:0003676 ... Q58241 N/A
    9843 6tvv:B (2.8) BS02 MN ? GO:0003676 ... Q58241 N/A
    9844 6txf:A (2.25) BS02 MN 3.1.5.- N/A Q9Y3Z3 32576829
    9845 6txf:B (2.25) BS05 MN 3.1.5.- N/A Q9Y3Z3 32576829
    9846 6tzp:A (1.72) BS01 MN 4.1.1.2 GO:0005737 ... O34714 34097877
    9847 6tzp:A (1.72) BS02 MN 4.1.1.2 GO:0005737 ... O34714 34097877
    9848 6u6b:A (3.108) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 32039434
    9849 6u6b:A (3.108) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 32039434
    9850 6ufi:A (1.72) BS01 MN 4.1.1.2 GO:0005737 ... O34714 34097877
    9851 6ufi:A (1.72) BS02 MN 4.1.1.2 GO:0005737 ... O34714 34097877
    9852 6unc:A (2.5) BS01 MN 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    9853 6unc:B (2.5) BS01 MN 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    9854 6unc:C (2.5) BS01 MN 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    9855 6unc:D (2.5) BS01 MN 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    9856 6uok:A (2.55) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    9857 6uok:F (2.55) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    9858 6uok:F (2.55) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    9859 6uok:F (2.55) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    9860 6uol:A (1.936) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    9861 6uol:A (1.936) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    9862 6uol:A (1.936) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    9863 6uol:A (1.936) BS08 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    9864 6uom:A (2.05) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    9865 6uom:A (2.05) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 31892517
    9866 6uqi:A (2.5) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    9867 6uqi:A (2.5) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    9868 6us5:A (2.25) BS04 MN 2.7.7.7 GO:0000166 ... D9N168 32188786
    9869 6us5:D (2.25) BS04 MN 2.7.7.7 GO:0000166 ... D9N168 32188786
    9870 6v0t:A (2.1) BS01 MN 3.1.3.43 GO:0004722 ... P35816 32627744
    9871 6v0t:A (2.1) BS02 MN 3.1.3.43 GO:0004722 ... P35816 32627744
    9872 6v0t:A (2.1) BS03 MN 3.1.3.43 GO:0004722 ... P35816 32627744
    9873 6v0t:A (2.1) BS04 MN 3.1.3.43 GO:0004722 ... P35816 32627744
    9874 6v2k:E (2.6) BS03 MN ? GO:0000786 ... P68431 33580188
    9875 6v2l:A (1.7) BS03 MN 4.1.1.49 GO:0000287 ... P22259 31911238
    9876 6v53:A (2.2) BS03 MN ? GO:0003723 ... C6H0Y9 N/A
    9877 6v53:A (2.2) BS04 MN ? GO:0003723 ... C6H0Y9 N/A
    9878 6v56:A (2.75) BS03 MN ? GO:0003723 ... C6H0Y9 N/A
    9879 6v56:A (2.75) BS04 MN ? GO:0003723 ... C6H0Y9 N/A
    9880 6v5k:A (2.69) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    9881 6v6x:A (2.5) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    9882 6v6x:A (2.5) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    9883 6v7c:A (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9884 6v7c:A (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9885 6v7c:B (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9886 6v7c:B (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9887 6v7c:C (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9888 6v7c:C (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9889 6v7c:D (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9890 6v7c:D (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9891 6v7c:E (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9892 6v7c:E (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9893 6v7c:F (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9894 6v7c:F (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9895 6v7d:A (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9896 6v7d:A (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9897 6v7d:B (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9898 6v7d:B (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9899 6v7d:C (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9900 6v7d:C (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9901 6v7d:D (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9902 6v7d:D (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9903 6v7d:E (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9904 6v7d:E (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9905 6v7d:F (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9906 6v7d:F (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9907 6v7e:A (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9908 6v7e:A (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9909 6v7e:B (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9910 6v7e:B (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9911 6v7e:C (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9912 6v7e:C (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9913 6v7e:D (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9914 6v7e:D (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9915 6v7e:E (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9916 6v7e:E (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9917 6v7e:F (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9918 6v7e:F (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9919 6v7f:A (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9920 6v7f:A (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9921 6v7f:B (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9922 6v7f:B (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9923 6v7f:C (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9924 6v7f:C (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9925 6v7f:D (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9926 6v7f:D (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9927 6v7f:E (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9928 6v7f:E (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9929 6v7f:F (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9930 6v7f:F (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    9931 6v95:A (1.78) BS02 MN ? GO:0030246 ... P02872 33135679
    9932 6v95:B (1.78) BS02 MN ? GO:0030246 ... P02872 33135679
    9933 6v95:C (1.78) BS02 MN ? GO:0030246 ... P02872 33135679
    9934 6v95:D (1.78) BS02 MN ? GO:0030246 ... P02872 33135679
    9935 6v9e:A (2.4) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    9936 6v9e:A (2.4) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    9937 6vav:A (1.85) BS02 MN ? GO:0030246 ... P02872 33135679
    9938 6vav:B (1.85) BS02 MN ? GO:0030246 ... P02872 33135679
    9939 6vav:D (1.85) BS02 MN ? GO:0030246 ... P02872 33135679
    9940 6vaw:A (1.75) BS02 MN ? GO:0030246 ... P02872 33135679
    9941 6vaw:B (1.75) BS02 MN ? GO:0030246 ... P02872 33135679
    9942 6vaw:C (1.75) BS02 MN ? GO:0030246 ... P02872 33135679
    9943 6vaw:D (1.75) BS02 MN ? GO:0030246 ... P02872 33135679
    9944 6vb8:A (2.2) BS02 MN ? GO:0005537 ... P55915 N/A
    9945 6vbr:A (2.75) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    9946 6vbr:A (2.75) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    9947 6vbz:A (2.192) BS01 MN ? GO:0004672 ... D3ZKP6 32561735
    9948 6vbz:B (2.192) BS01 MN ? GO:0004672 ... D3ZKP6 32561735
    9949 6vc3:A (1.95) BS02 MN ? GO:0030246 ... P02872 33135679
    9950 6vc3:B (1.95) BS02 MN ? GO:0030246 ... P02872 33135679
    9951 6vc3:C (1.95) BS01 MN ? GO:0030246 ... P02872 33135679
    9952 6vc3:D (1.95) BS02 MN ? GO:0030246 ... P02872 33135679
    9953 6vc4:A (1.9) BS02 MN ? GO:0030246 ... P02872 33135679
    9954 6vc4:B (1.9) BS02 MN ? GO:0030246 ... P02872 33135679
    9955 6vc4:C (1.9) BS02 MN ? GO:0030246 ... P02872 33135679
    9956 6vc4:D (1.9) BS02 MN ? GO:0030246 ... P02872 33135679
    9957 6vc6:A (2.133) BS01 MN N/A GO:0003824 ... N/A N/A
    9958 6vc6:B (2.133) BS01 MN N/A GO:0003824 ... N/A N/A
    9959 6vc6:C (2.133) BS01 MN N/A GO:0003824 ... N/A N/A
    9960 6vc6:D (2.133) BS01 MN N/A GO:0003824 ... N/A N/A
    9961 6vdc:A (2.402) BS01 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    9962 6vde:A (2.713) BS01 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    9963 6vde:A (2.713) BS02 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    9964 6vde:A (2.713) BS03 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    9965 6vde:B (2.713) BS01 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    9966 6vde:B (2.713) BS02 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    9967 6vde:B (2.713) BS03 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    9968 6vdf:A (1.92) BS01 MN ? N/A P40709 33082366
    9969 6vdf:D (1.92) BS02 MN ? N/A P40709 33082366
    9970 6vf3:A (1.521) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9971 6vf3:A (1.521) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9972 6vf3:A (1.521) BS07 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9973 6vf4:A (1.75) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9974 6vf4:A (1.75) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9975 6vf4:A (1.75) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9976 6vf5:A (1.6) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9977 6vf5:A (1.6) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9978 6vf5:A (1.6) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9979 6vf6:A (1.69) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9980 6vf6:A (1.69) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9981 6vf6:A (1.69) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9982 6vf7:A (1.871) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9983 6vf7:A (1.871) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9984 6vf7:A (1.871) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9985 6vfa:A (1.76) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9986 6vfa:A (1.76) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9987 6vfa:A (1.76) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9988 6vfa:A (1.76) BS07 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9989 6vfb:A (1.55) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9990 6vfb:A (1.55) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9991 6vfb:A (1.55) BS07 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9992 6vfc:A (1.59) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9993 6vfc:A (1.59) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9994 6vfc:A (1.59) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9995 6vfc:A (1.59) BS07 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    9996 6vg9:A (2.75) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    9997 6vg9:A (2.75) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    9998 6vgf:A (1.83) BS02 MN ? GO:0030246 ... P02872 33135679
    9999 6vgf:B (1.83) BS02 MN ? GO:0030246 ... P02872 33135679
    10000 6vgf:C (1.83) BS02 MN ? GO:0030246 ... P02872 33135679

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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