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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1jdb:H (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    802 1jdb:H (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    803 1jdb:H (2.1) BS04 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    804 1jdb:H (2.1) BS05 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    805 1jdb:K (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    806 1jdb:K (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    807 1jdb:K (2.1) BS04 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    808 1jdb:K (2.1) BS05 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    809 1jfz:A (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    810 1jfz:B (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    811 1jfz:C (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    812 1jfz:D (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    813 1jk7:A (1.9) BS01 MN 3.1.3.16 GO:0000070 ... P36873 11535607
    814 1jk7:A (1.9) BS02 MN 3.1.3.16 GO:0000070 ... P36873 11535607
    815 1jlk:A (2.3) BS01 MN ? GO:0000160 ... Q55169 11847283
    816 1jlm:A (2.0) BS01 MN ? N/A P11215 8747460
    817 1jm0:A (1.7) BS01 MN N/A N/A N/A 11749531
    818 1jm0:B (1.7) BS01 MN N/A N/A N/A 11749531
    819 1jm0:B (1.7) BS02 MN N/A N/A N/A 11749531
    820 1jm0:C (1.7) BS01 MN N/A N/A N/A 11749531
    821 1jm0:C (1.7) BS02 MN N/A N/A N/A 11749531
    822 1jm0:D (1.7) BS02 MN N/A N/A N/A 11749531
    823 1jm0:D (1.7) BS03 MN N/A N/A N/A 11749531
    824 1jm0:D (1.7) BS04 MN N/A N/A N/A 11749531
    825 1jm0:E (1.7) BS01 MN N/A N/A N/A 11749531
    826 1jm0:E (1.7) BS02 MN N/A N/A N/A 11749531
    827 1jm0:F (1.7) BS01 MN N/A N/A N/A 11749531
    828 1jm0:F (1.7) BS02 MN N/A N/A N/A 11749531
    829 1jmb:A (2.2) BS01 MN N/A N/A N/A 11749531
    830 1jmb:B (2.2) BS01 MN N/A N/A N/A 11749531
    831 1jmb:C (2.2) BS02 MN N/A N/A N/A 11749531
    832 1jn2:P (1.9) BS02 MN ? GO:0030246 ... P02866 11504727
    833 1joj:A (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    834 1joj:B (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    835 1joj:C (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    836 1joj:D (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    837 1jpr:A (1.88) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    838 1jpr:A (1.88) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    839 1jpr:B (1.88) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    840 1jpr:B (1.88) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    841 1jqc:A (1.61) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    842 1jqc:A (1.61) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    843 1jqc:B (1.61) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    844 1jqc:B (1.61) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    845 1jqn:A (2.35) BS01 MN 4.1.1.31 GO:0000287 ... P00864 12467579
    846 1jr9:A (2.8) BS01 MN 1.15.1.1 GO:0004784 ... Q7SIC3 12457847
    847 1jst:A (2.6) BS01 MN 2.7.11.22 GO:0000082 ... P24941 8756328
    848 1jst:C (2.6) BS01 MN 2.7.11.22 GO:0000082 ... P24941 8756328
    849 1jui:A (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    850 1jui:B (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    851 1jui:C (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    852 1jui:D (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    853 1jw6:A (1.93) BS02 MN ? GO:0030246 ... P02866 11732694
    854 1jxn:A (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    855 1jxn:B (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    856 1jxn:C (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    857 1jxn:D (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    858 1jyc:A (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    859 1jyc:B (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    860 1jyc:C (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    861 1jyc:D (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    862 1jyi:A (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    863 1jyi:B (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    864 1jyi:C (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    865 1jyi:D (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    866 1k20:A (1.5) BS01 MN 3.6.1.1 GO:0004427 ... P95765 11697905
    867 1k20:A (1.5) BS02 MN 3.6.1.1 GO:0004427 ... P95765 11697905
    868 1k20:B (1.5) BS01 MN 3.6.1.1 GO:0004427 ... P95765 11697905
    869 1k20:B (1.5) BS02 MN 3.6.1.1 GO:0004427 ... P95765 11697905
    870 1k23:A (3.0) BS01 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    871 1k23:A (3.0) BS02 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    872 1k23:B (3.0) BS01 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    873 1k23:B (3.0) BS02 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    874 1k23:C (3.0) BS01 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    875 1k23:C (3.0) BS02 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    876 1k23:D (3.0) BS01 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    877 1k23:D (3.0) BS02 MN 3.6.1.1 GO:0004427 ... P37487 11697905
    878 1k4l:A (1.6) BS03 MN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    879 1k4o:A (1.1) BS02 MN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    880 1k4v:A (1.53) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11592969
    881 1k4v:B (1.53) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11592969
    882 1k83:A (2.8) BS04 MN 2.7.7.6 GO:0000428 ... P04050 11805306
    883 1kee:A (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    884 1kee:A (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    885 1kee:A (2.1) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    886 1kee:C (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    887 1kee:C (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    888 1kee:C (2.1) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    889 1kee:E (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    890 1kee:E (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    891 1kee:E (2.1) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    892 1kee:G (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    893 1kee:G (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    894 1kee:G (2.1) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 11729189
    895 1kfl:A (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    896 1kfl:B (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    897 1kfl:C (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    898 1kfl:D (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    899 1kfl:E (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    900 1kfl:F (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    901 1kfl:G (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    902 1kfl:H (2.8) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    903 1kgp:A (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    904 1kgp:A (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    905 1kgp:B (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    906 1kgp:B (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    907 1kgp:C (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    908 1kgp:C (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    909 1kgp:C (2.0) BS03 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    910 1kgp:D (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    911 1kgp:D (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    912 1kgz:A (2.4) BS01 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    913 1kgz:A (2.4) BS02 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    914 1kgz:B (2.4) BS01 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    915 1kgz:B (2.4) BS02 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    916 1khb:A (1.854) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P35558 11851336
    917 1khe:A (2.4) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P35558 11851336
    918 1khf:A (2.02) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P35558 11851336
    919 1khg:A (2.34) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P35558 11851336
    920 1khw:A (2.7) BS01 MN 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... P27410 11677245
    921 1khw:A (2.7) BS02 MN 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... P27410 11677245
    922 1khw:B (2.7) BS01 MN 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... P27410 11677245
    923 1kkc:A (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    924 1kkc:B (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    925 1kkc:X (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    926 1kkc:Y (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q92450 11801664
    927 1knj:A (2.8) BS01 MN 4.6.1.12 GO:0005515 ... P62617 11786530
    928 1knk:A (2.8) BS01 MN 4.6.1.12 GO:0005515 ... P62617 11786530
    929 1ksi:A (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    930 1ksi:B (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    931 1kws:A (2.1) BS01 MN 2.4.1.135 GO:0015018 ... O94766 11950836
    932 1kz8:A (2.0) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12190310
    933 1kz8:F (2.0) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12190310
    934 1l3j:A (1.9) BS01 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    935 1l3j:A (1.9) BS02 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    936 1l5g:A (3.2) BS02 MN ? GO:0001525 ... P06756 11884718
    937 1l5g:A (3.2) BS03 MN ? GO:0001525 ... P06756 11884718
    938 1l5g:A (3.2) BS04 MN ? GO:0001525 ... P06756 11884718
    939 1l5g:A (3.2) BS05 MN ? GO:0001525 ... P06756 11884718
    940 1l5g:A (3.2) BS06 MN ? GO:0001525 ... P06756 11884718
    941 1l5g:B (3.2) BS02 MN ? GO:0001618 ... P05106 11884718
    942 1l5g:B (3.2) BS03 MN ? GO:0001618 ... P05106 11884718
    943 1l5g:B (3.2) BS04 MN ? GO:0001618 ... P05106 11884718
    944 1lby:A (2.25) BS02 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    945 1lby:A (2.25) BS03 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    946 1lby:A (2.25) BS04 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    947 1lby:B (2.25) BS02 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    948 1lby:B (2.25) BS03 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    949 1lby:B (2.25) BS04 MN 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    950 1lec:A (2.0) BS01 MN ? GO:0030246 ... P24146 8478943
    951 1led:A (2.0) BS05 MN ? GO:0030246 ... P24146 8478943
    952 1lem:A (3.0) BS03 MN ? GO:0030246 ... P02870 7696853
    953 1len:A (1.8) BS02 MN ? GO:0030246 ... P02870 7731952
    954 1len:C (1.8) BS02 MN ? GO:0030246 ... P02870 7731952
    955 1les:A (1.9) BS03 MN ? GO:0030246 ... P02870 7592736
    956 1les:C (1.9) BS03 MN ? GO:0030246 ... P02870 7592736
    957 1lev:A (2.15) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    958 1lev:A (2.15) BS03 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    959 1lev:F (2.15) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    960 1lev:F (2.15) BS03 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    961 1lfa:A (1.8) BS01 MN ? N/A P20701 7479767
    962 1lfa:B (1.8) BS01 MN ? N/A P20701 7479767
    963 1lgb:A (3.3) BS03 MN ? GO:0005515 ... P04122 8069634
    964 1lgc:A (2.8) BS04 MN ? GO:0005515 ... P04122 8069634
    965 1lgc:C (2.8) BS04 MN ? GO:0005515 ... P04122 8069634
    966 1lgc:E (2.8) BS03 MN ? GO:0005515 ... P04122 8069634
    967 1lgr:A (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    968 1lgr:A (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    969 1lgr:B (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    970 1lgr:B (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    971 1lgr:C (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    972 1lgr:C (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    973 1lgr:D (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    974 1lgr:D (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    975 1lgr:E (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    976 1lgr:E (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    977 1lgr:F (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    978 1lgr:F (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    979 1lgr:G (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    980 1lgr:G (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    981 1lgr:H (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    982 1lgr:H (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    983 1lgr:I (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    984 1lgr:I (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    985 1lgr:J (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    986 1lgr:J (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    987 1lgr:K (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    988 1lgr:K (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    989 1lgr:L (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    990 1lgr:L (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    991 1ll2:A (1.9) BS01 MN 2.4.1.186 GO:0005737 ... P13280 12051921
    992 1lnc:E (1.8) BS02 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    993 1lnc:E (1.8) BS04 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    994 1lnc:E (1.8) BS05 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    995 1loa:A (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    996 1loa:C (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    997 1loa:G (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    998 1lob:A (2.0) BS02 MN ? GO:0005515 ... P04122 2091026
    999 1lob:C (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    1000 1lob:E (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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