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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9201 6jvw:A (2.25) BS02 MN ? GO:0003824 ... G2IPX5 31079929
    9202 6jvw:B (2.25) BS02 MN ? GO:0003824 ... G2IPX5 31079929
    9203 6k18:A (2.303) BS01 MN 3.1.11.1
    3.1.13.-
    GO:0003676 ... Q9NVH0 31127291
    9204 6k18:B (2.303) BS01 MN 3.1.11.1
    3.1.13.-
    GO:0003676 ... Q9NVH0 31127291
    9205 6k1a:A (2.602) BS01 MN 3.1.11.1
    3.1.13.-
    GO:0003676 ... Q9NVH0 31127291
    9206 6k1a:B (2.602) BS01 MN 3.1.11.1
    3.1.13.-
    GO:0003676 ... Q9NVH0 31127291
    9207 6k1b:A (2.605) BS01 MN 3.1.11.1
    3.1.13.-
    GO:0003676 ... Q9NVH0 31127291
    9208 6k1b:B (2.605) BS01 MN 3.1.11.1
    3.1.13.-
    GO:0003676 ... Q9NVH0 31127291
    9209 6k1d:A (3.0) BS01 MN 3.1.11.1
    3.1.13.-
    GO:0003676 ... Q9NVH0 31127291
    9210 6k1d:B (3.0) BS01 MN 3.1.11.1
    3.1.13.-
    GO:0003676 ... Q9NVH0 31127291
    9211 6k1f:A (2.5) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9212 6k1f:B (2.5) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9213 6k1f:C (2.5) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9214 6k1f:D (2.5) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9215 6k1f:E (2.5) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9216 6k1f:F (2.5) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9217 6k1g:A (2.96) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9218 6k1g:B (2.96) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9219 6k1g:C (2.96) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9220 6k1g:D (2.96) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9221 6k1g:E (2.96) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9222 6k1g:F (2.96) BS01 MN 5.3.1.25 GO:0005737 ... A0A443VNT1 31827610
    9223 6k5l:A (2.55) BS03 MN 2.7.11.5
    3.1.3.-
    GO:0000287 ... P11071 31235769
    9224 6k5l:A (2.55) BS04 MN 2.7.11.5
    3.1.3.-
    GO:0000287 ... P11071 31235769
    9225 6k5l:B (2.55) BS03 MN 2.7.11.5
    3.1.3.-
    GO:0000287 ... P11071 31235769
    9226 6k5l:B (2.55) BS04 MN 2.7.11.5
    3.1.3.-
    GO:0000287 ... P11071 31235769
    9227 6k6s:A (2.993) BS01 MN 3.1.-.- GO:0003723 ... Q8CT16 N/A
    9228 6k6s:A (2.993) BS02 MN 3.1.-.- GO:0003723 ... Q8CT16 N/A
    9229 6k6s:B (2.993) BS01 MN 3.1.-.- GO:0003723 ... Q8CT16 N/A
    9230 6k6s:B (2.993) BS02 MN 3.1.-.- GO:0003723 ... Q8CT16 N/A
    9231 6k6w:A (2.7) BS01 MN 3.1.-.- GO:0003723 ... Q8CST0 N/A
    9232 6k6w:B (2.7) BS01 MN 3.1.-.- GO:0003723 ... Q8CST0 N/A
    9233 6k6w:C (2.7) BS01 MN 3.1.-.- GO:0003723 ... Q8CST0 N/A
    9234 6k6w:D (2.7) BS01 MN 3.1.-.- GO:0003723 ... Q8CST0 N/A
    9235 6khh:A (1.65) BS01 MN 4.2.1.19 GO:0000105 ... P9WML9 34288118
    9236 6khh:A (1.65) BS02 MN 4.2.1.19 GO:0000105 ... P9WML9 34288118
    9237 6klc:A (3.9) BS01 MN 2.7.7.48
    3.1.-.-
    GO:0000166 ... A0A097F4L1 32214249
    9238 6kld:A (3.58) BS01 MN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 32214249
    9239 6kle:A (4.5) BS02 MN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 32214249
    9240 6klh:A (3.7) BS02 MN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 32214249
    9241 6klh:C (3.7) BS02 MN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 32214249
    9242 6ktb:B (2.5) BS01 MN ? GO:0003677 ... Q9K943 31738781
    9243 6ktb:B (2.5) BS02 MN ? GO:0003677 ... Q9K943 31738781
    9244 6kxu:A (2.83) BS01 MN ? GO:0005544 ... Q941L3 N/A
    9245 6kxu:B (2.83) BS01 MN ? GO:0005544 ... Q941L3 N/A
    9246 6kxu:C (2.83) BS01 MN ? GO:0005544 ... Q941L3 N/A
    9247 6kxu:D (2.83) BS01 MN ? GO:0005544 ... Q941L3 N/A
    9248 6kxu:D (2.83) BS02 MN ? GO:0005544 ... Q941L3 N/A
    9249 6kxu:E (2.83) BS01 MN ? GO:0005544 ... Q941L3 N/A
    9250 6kxu:F (2.83) BS01 MN ? GO:0005544 ... Q941L3 N/A
    9251 6kxu:F (2.83) BS02 MN ? GO:0005544 ... Q941L3 N/A
    9252 6kxu:G (2.83) BS01 MN ? GO:0005544 ... Q941L3 N/A
    9253 6kxu:H (2.83) BS01 MN ? GO:0005544 ... Q941L3 N/A
    9254 6l7v:A (2.2) BS01 MN 3.6.1.74 GO:0004651 ... Q4E2I1 32381506
    9255 6l7w:A (2.6) BS01 MN 3.6.1.74 GO:0004651 ... Q4E2I1 32381506
    9256 6l7w:B (2.6) BS01 MN 3.6.1.74 GO:0004651 ... Q4E2I1 32381506
    9257 6l9i:A (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    9258 6l9i:A (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    9259 6l9i:B (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    9260 6l9i:B (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    9261 6l9i:C (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    9262 6l9i:C (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    9263 6l9i:D (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    9264 6l9i:D (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    9265 6l9i:E (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    9266 6l9i:E (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    9267 6l9i:F (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    9268 6l9i:F (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    9269 6ll7:A (2.2) BS01 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    9270 6ll7:A (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    9271 6ll7:B (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    9272 6ll7:B (2.2) BS03 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    9273 6ll7:C (2.2) BS01 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    9274 6ll7:C (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    9275 6ll7:D (2.2) BS01 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    9276 6ll7:D (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    9277 6lna:A (1.701) BS01 MN 2.7.7.108 GO:0000287 ... P77649 32966796
    9278 6lna:B (1.701) BS01 MN 2.7.7.108 GO:0000287 ... P77649 32966796
    9279 6lrd:A (1.90134) BS03 MN ? GO:0003676 ... D0EM60 32870272
    9280 6lrd:A (1.90134) BS04 MN ? GO:0003676 ... D0EM60 32870272
    9281 6lrt:A (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    9282 6lrt:D (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    9283 6lrt:G (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    9284 6lrt:J (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    9285 6lrt:M (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    9286 6lrt:P (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    9287 6lrt:S (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    9288 6lrt:V (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    9289 6lug:A (1.9) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    9290 6lug:A (1.9) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    9291 6lug:B (1.9) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    9292 6lug:B (1.9) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    9293 6luh:A (1.5) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    9294 6luh:A (1.5) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    9295 6luh:B (1.5) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    9296 6luh:B (1.5) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    9297 6m30:A (1.74) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 N/A
    9298 6m30:B (1.74) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 N/A
    9299 6m30:C (1.74) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 N/A
    9300 6m30:D (1.74) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 N/A
    9301 6m30:E (1.74) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 N/A
    9302 6m30:F (1.74) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 N/A
    9303 6m7o:A (3.0) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 30275308
    9304 6m7o:A (3.0) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 30275308
    9305 6m7v:A (3.062) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 30275308
    9306 6m7v:A (3.062) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 30275308
    9307 6mcp:C (2.5) BS01 MN 2.7.11.1 N/A Q5ZU83 32513747
    9308 6md3:A (2.29) BS01 MN ? N/A Q95Z12 30593255
    9309 6md3:A (2.29) BS02 MN ? N/A Q95Z12 30593255
    9310 6md3:B (2.29) BS01 MN ? N/A Q95Z12 30593255
    9311 6md3:B (2.29) BS02 MN ? N/A Q95Z12 30593255
    9312 6md3:C (2.29) BS01 MN ? N/A Q95Z12 30593255
    9313 6md3:D (2.29) BS01 MN ? N/A Q95Z12 30593255
    9314 6md3:D (2.29) BS02 MN ? N/A Q95Z12 30593255
    9315 6md3:E (2.29) BS01 MN ? N/A Q95Z12 30593255
    9316 6md3:E (2.29) BS02 MN ? N/A Q95Z12 30593255
    9317 6md3:F (2.29) BS01 MN ? N/A Q95Z12 30593255
    9318 6md3:F (2.29) BS02 MN ? N/A Q95Z12 30593255
    9319 6mk0:A (3.005) BS01 MN ? GO:0001525 ... P06756 N/A
    9320 6mk0:A (3.005) BS02 MN ? GO:0001525 ... P06756 N/A
    9321 6mk0:A (3.005) BS03 MN ? GO:0001525 ... P06756 N/A
    9322 6mk0:A (3.005) BS04 MN ? GO:0001525 ... P06756 N/A
    9323 6mk0:A (3.005) BS05 MN ? GO:0001525 ... P06756 N/A
    9324 6mk0:B (3.005) BS01 MN ? GO:0001618 ... P05106 N/A
    9325 6mk0:B (3.005) BS02 MN ? GO:0001618 ... P05106 N/A
    9326 6mk0:B (3.005) BS03 MN ? GO:0001618 ... P05106 N/A
    9327 6msl:A (3.104) BS01 MN ? GO:0001525 ... P06756 31353240
    9328 6msl:A (3.104) BS02 MN ? GO:0001525 ... P06756 31353240
    9329 6msl:A (3.104) BS03 MN ? GO:0001525 ... P06756 31353240
    9330 6msl:A (3.104) BS04 MN ? GO:0001525 ... P06756 31353240
    9331 6msl:A (3.104) BS05 MN ? GO:0001525 ... P06756 31353240
    9332 6msl:B (3.104) BS01 MN ? GO:0001618 ... P05106 31353240
    9333 6msl:B (3.104) BS02 MN ? GO:0001618 ... P05106 31353240
    9334 6msl:B (3.104) BS03 MN ? GO:0001618 ... P05106 31353240
    9335 6msu:A (3.11) BS03 MN ? GO:0001525 ... P06756 31353240
    9336 6msu:A (3.11) BS04 MN ? GO:0001525 ... P06756 31353240
    9337 6msu:A (3.11) BS05 MN ? GO:0001525 ... P06756 31353240
    9338 6msu:A (3.11) BS06 MN ? GO:0001525 ... P06756 31353240
    9339 6msu:A (3.11) BS07 MN ? GO:0001525 ... P06756 31353240
    9340 6msu:B (3.11) BS01 MN ? GO:0001618 ... P05106 31353240
    9341 6msu:B (3.11) BS02 MN ? GO:0001618 ... P05106 31353240
    9342 6msu:B (3.11) BS03 MN ? GO:0001618 ... P05106 31353240
    9343 6mw8:A (1.756) BS01 MN 2.4.1.87 GO:0000166 ... K3WC47 32414843
    9344 6n1a:A (1.6) BS01 MN ? N/A G9YSP4 31182795
    9345 6naj:A (3.1) BS01 MN ? GO:0001525 ... P06756 31964886
    9346 6naj:A (3.1) BS02 MN ? GO:0001525 ... P06756 31964886
    9347 6naj:A (3.1) BS03 MN ? GO:0001525 ... P06756 31964886
    9348 6naj:A (3.1) BS04 MN ? GO:0001525 ... P06756 31964886
    9349 6naj:A (3.1) BS05 MN ? GO:0001525 ... P06756 31964886
    9350 6naj:B (3.1) BS01 MN ? GO:0001618 ... P05106 31964886
    9351 6naj:B (3.1) BS02 MN ? GO:0001618 ... P05106 31964886
    9352 6naj:B (3.1) BS03 MN ? GO:0001618 ... P05106 31964886
    9353 6nbk:A (1.91) BS01 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9354 6nbk:A (1.91) BS02 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9355 6nbk:A (1.91) BS03 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9356 6nbk:B (1.91) BS01 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9357 6nbk:B (1.91) BS02 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9358 6nbk:B (1.91) BS03 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9359 6nbk:C (1.91) BS01 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9360 6nbk:C (1.91) BS02 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9361 6nbk:D (1.91) BS01 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9362 6nbk:D (1.91) BS02 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9363 6nbk:E (1.91) BS01 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9364 6nbk:E (1.91) BS02 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9365 6nbk:F (1.91) BS01 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9366 6nbk:F (1.91) BS02 MN 3.5.3.1 GO:0000050 ... W8YSI5 N/A
    9367 6ncs:A (1.8) BS01 MN ? GO:0016051 ... Q04TM5 N/A
    9368 6ncs:B (1.8) BS01 MN ? GO:0016051 ... Q04TM5 N/A
    9369 6ndd:C (3.05) BS01 MN ? N/A P17301 N/A
    9370 6ndd:F (3.05) BS01 MN ? N/A P17301 N/A
    9371 6ndd:I (3.05) BS01 MN ? N/A P17301 N/A
    9372 6ndd:L (3.05) BS01 MN ? N/A P17301 N/A
    9373 6ndd:O (3.05) BS01 MN ? N/A P17301 N/A
    9374 6ndd:R (3.05) BS01 MN ? N/A P17301 N/A
    9375 6nel:A (2.0) BS01 MN ? GO:0003723 ... C6H0Y9 30983160
    9376 6nel:A (2.0) BS02 MN ? GO:0003723 ... C6H0Y9 30983160
    9377 6nem:A (1.95) BS01 MN ? GO:0003723 ... C6H0Y9 30983160
    9378 6nem:A (1.95) BS02 MN ? GO:0003723 ... C6H0Y9 30983160
    9379 6nlr:A (2.1) BS01 MN N/A GO:0000105 ... N/A 31794207
    9380 6nlr:A (2.1) BS02 MN N/A GO:0000105 ... N/A 31794207
    9381 6nlr:C (2.1) BS01 MN N/A GO:0000105 ... N/A 31794207
    9382 6npz:A (2.12) BS02 MN 2.7.11.1 GO:0004672 ... P31749 30078705
    9383 6npz:B (2.12) BS02 MN 2.7.11.1 GO:0004672 ... P31749 30078705
    9384 6nqt:A (3.05) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 32325029
    9385 6nqt:B (3.05) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 32325029
    9386 6nqt:C (3.05) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 32325029
    9387 6nqt:D (3.05) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 32325029
    9388 6nqt:E (3.05) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 32325029
    9389 6nqt:F (3.05) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 32325029
    9390 6nts:C (3.63) BS01 MN 3.1.3.16 GO:0000159 ... P67775 32315618
    9391 6nts:C (3.63) BS02 MN 3.1.3.16 GO:0000159 ... P67775 32315618
    9392 6nvo:A (2.196) BS01 MN ? GO:0016787 ... Q88NV2 30894417
    9393 6nvo:A (2.196) BS02 MN ? GO:0016787 ... Q88NV2 30894417
    9394 6nvp:A (2.0) BS01 MN ? GO:0016787 ... Q88NV2 30894417
    9395 6o5c:A (3.1) BS01 MN ? GO:0003677 ... A0A0H2UTK0 31188450
    9396 6o5c:B (3.1) BS01 MN ? GO:0003677 ... A0A0H2UTK0 31188450
    9397 6o5c:B (3.1) BS02 MN ? GO:0003677 ... A0A0H2UTK0 31188450
    9398 6o74:A (2.71) BS03 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    9399 6o74:A (2.71) BS04 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    9400 6o74:A (2.71) BS05 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218