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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8401 5yn3:D (2.7) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29385668
    8402 5yn3:D (2.7) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29385668
    8403 5yvm:A (2.12) BS01 MN ? GO:0000166 ... A0A133UP32 29188989
    8404 5yvr:A (1.896) BS01 MN ? GO:0000166 ... A0A133UP32 29188989
    8405 5yvs:A (2.345) BS01 MN ? GO:0000166 ... A0A133UP32 29188989
    8406 5z2k:A (1.8) BS01 MN ? GO:0007155 ... C6XF58 30125692
    8407 5z2p:A (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    8408 5z2p:B (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    8409 5z2p:C (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    8410 5z2p:D (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    8411 5z2p:E (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    8412 5z2p:F (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    8413 5z2p:G (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    8414 5z2p:H (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    8415 5z2r:G (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    8416 5z5l:A (2.3) BS01 MN ? GO:0030246 ... P02866 N/A
    8417 5z5l:B (2.3) BS01 MN ? GO:0030246 ... P02866 N/A
    8418 5z5l:C (2.3) BS01 MN ? GO:0030246 ... P02866 N/A
    8419 5z5n:A (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    8420 5z5n:B (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    8421 5z5n:C (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    8422 5z5n:D (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    8423 5z5p:A (1.4) BS01 MN ? GO:0030246 ... P02866 N/A
    8424 5z5p:B (1.4) BS03 MN ? GO:0030246 ... P02866 N/A
    8425 5z5y:A (1.89) BS02 MN ? GO:0030246 ... P02866 N/A
    8426 5z5y:B (1.89) BS02 MN ? GO:0030246 ... P02866 N/A
    8427 5z6w:A (3.2) BS03 MN 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    8428 5z6w:A (3.2) BS04 MN 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    8429 5zac:A (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    8430 5zac:B (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    8431 5zac:C (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    8432 5zac:D (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    8433 5ze1:A (3.0) BS07 MN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    8434 5ze1:A (3.0) BS08 MN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    8435 5ze1:C (3.0) BS07 MN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    8436 5ze1:C (3.0) BS08 MN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    8437 5ze2:A (3.3) BS07 MN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    8438 5ze2:A (3.3) BS08 MN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    8439 5ze2:C (3.3) BS07 MN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    8440 5ze2:C (3.3) BS08 MN 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    8441 5zee:A (1.74) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8442 5zee:A (1.74) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8443 5zee:B (1.74) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8444 5zee:B (1.74) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8445 5zef:A (2.01) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8446 5zef:A (2.01) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8447 5zef:B (2.01) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8448 5zef:B (2.01) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8449 5zeh:A (2.36) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8450 5zeh:A (2.36) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8451 5zeh:B (2.36) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8452 5zeh:B (2.36) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    8453 5zen:A (2.75) BS03 MN 5.6.2.2 GO:0003677 ... Q02880 30082834
    8454 5zfs:A (1.96) BS01 MN 5.1.3.- GO:0005975 ... A0A1L7NQ96 30279320
    8455 5zfs:B (1.96) BS01 MN 5.1.3.- GO:0005975 ... A0A1L7NQ96 30279320
    8456 5zha:A (1.84) BS01 MN ? GO:0007155 ... C6XF58 30125692
    8457 5zlc:A (2.0) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8458 5zlc:A (2.0) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8459 5zmd:A (3.3) BS03 MN 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 30718435
    8460 5zmd:C (3.3) BS03 MN 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 30718435
    8461 5zmd:E (3.3) BS03 MN 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 30718435
    8462 5zmd:G (3.3) BS03 MN 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 30718435
    8463 5zo4:A (2.5) BS01 MN N/A GO:0003676 ... N/A 30666241
    8464 5zo4:A (2.5) BS02 MN N/A GO:0003676 ... N/A 30666241
    8465 5zo4:B (2.5) BS01 MN N/A GO:0003676 ... N/A 30666241
    8466 5zo4:B (2.5) BS02 MN N/A GO:0003676 ... N/A 30666241
    8467 5zo5:A (2.297) BS01 MN N/A GO:0003676 ... N/A 30666241
    8468 5zo5:A (2.297) BS02 MN N/A GO:0003676 ... N/A 30666241
    8469 5zo5:B (2.297) BS01 MN N/A GO:0003676 ... N/A 30666241
    8470 5zo5:B (2.297) BS02 MN N/A GO:0003676 ... N/A 30666241
    8471 5zqf:A (3.873) BS03 MN 5.6.2.2 GO:0003677 ... Q02880 30082834
    8472 5zqn:A (1.8) BS01 MN 4.2.1.19 GO:0000105 ... P9WML9 34288118
    8473 5zqn:A (1.8) BS02 MN 4.2.1.19 GO:0000105 ... P9WML9 34288118
    8474 5zqv:A (2.95) BS02 MN 3.1.3.16 GO:0000164 ... P62137 30422398
    8475 5zqv:B (2.95) BS03 MN 3.1.3.16 GO:0000164 ... P62137 30422398
    8476 5zqv:C (2.95) BS02 MN 3.1.3.16 GO:0000164 ... P62137 30422398
    8477 5zqv:D (2.95) BS02 MN 3.1.3.16 GO:0000164 ... P62137 30422398
    8478 5zr6:A (3.0) BS01 MN ? GO:0003677 ... I6Y1Q2 29730293
    8479 5zr6:A (3.0) BS02 MN ? GO:0003677 ... I6Y1Q2 29730293
    8480 5zr6:A (3.0) BS03 MN ? GO:0003677 ... I6Y1Q2 29730293
    8481 5zr6:B (3.0) BS01 MN ? GO:0003677 ... I6Y1Q2 29730293
    8482 5zr6:B (3.0) BS02 MN ? GO:0003677 ... I6Y1Q2 29730293
    8483 5zr6:B (3.0) BS03 MN ? GO:0003677 ... I6Y1Q2 29730293
    8484 5zt0:A (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8485 5zt0:A (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8486 5zt0:B (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8487 5zt0:B (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8488 5zt0:C (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8489 5zt0:C (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8490 5zt0:D (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8491 5zt0:D (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8492 5zt0:E (3.32043) BS01 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8493 5zt0:E (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8494 5zt0:F (3.32043) BS01 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8495 5zt0:F (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    8496 5zyc:A (1.75) BS01 MN 5.3.1.5 GO:0000287 ... P24300 29909012
    8497 5zyc:A (1.75) BS02 MN 5.3.1.5 GO:0000287 ... P24300 29909012
    8498 5zye:A (1.4) BS01 MN 5.3.1.5 GO:0000287 ... P24300 29909012
    8499 5zye:A (1.4) BS02 MN 5.3.1.5 GO:0000287 ... P24300 29909012
    8500 5zyw:A (2.2) BS01 MN 3.1.-.- N/A Q9BQP7 30247721
    8501 5zyw:A (2.2) BS02 MN 3.1.-.- N/A Q9BQP7 30247721
    8502 5zyw:A (2.2) BS03 MN 3.1.-.- N/A Q9BQP7 30247721
    8503 6a53:A (2.0) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    8504 6a53:B (2.0) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    8505 6a54:A (2.3) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    8506 6a54:B (2.3) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    8507 6a55:A (1.6) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    8508 6a55:B (1.6) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    8509 6a9t:A (2.15) BS01 MN 3.4.11.26 GO:0030145 ... P40051 30582634
    8510 6a9t:A (2.15) BS02 MN 3.4.11.26 GO:0030145 ... P40051 30582634
    8511 6a9u:A (2.4) BS02 MN 3.4.11.26 GO:0030145 ... P40051 30582634
    8512 6a9u:A (2.4) BS03 MN 3.4.11.26 GO:0030145 ... P40051 30582634
    8513 6a9v:A (2.9) BS01 MN 3.4.11.26 GO:0004177 ... P40051 30582634
    8514 6a9v:A (2.9) BS02 MN 3.4.11.26 GO:0004177 ... P40051 30582634
    8515 6aci:A (1.87) BS02 MN 2.4.1.- GO:0005515 ... B7UI21 30979585
    8516 6adx:A (1.752) BS02 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 30672289
    8517 6ady:A (1.9) BS02 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 30672289
    8518 6ae9:A (1.47) BS03 MN 3.1.3.16 N/A Q942P9 30453087
    8519 6ae9:B (1.47) BS04 MN 3.1.3.16 N/A Q942P9 30453087
    8520 6aec:A (1.72) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8521 6aec:A (1.72) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8522 6aeh:A (1.64) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8523 6aeh:A (1.64) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8524 6ah7:A (2.38) BS01 MN N/A GO:0016795 ... N/A 32515491
    8525 6ah7:A (2.38) BS02 MN N/A GO:0016795 ... N/A 32515491
    8526 6ah7:B (2.38) BS01 MN N/A GO:0016795 ... N/A 32515491
    8527 6ah7:B (2.38) BS02 MN N/A GO:0016795 ... N/A 32515491
    8528 6ah7:C (2.38) BS01 MN N/A GO:0016795 ... N/A 32515491
    8529 6ah7:C (2.38) BS02 MN N/A GO:0016795 ... N/A 32515491
    8530 6ah7:D (2.38) BS01 MN N/A GO:0016795 ... N/A 32515491
    8531 6ah7:D (2.38) BS02 MN N/A GO:0016795 ... N/A 32515491
    8532 6ah8:A (2.61) BS01 MN N/A GO:0016795 ... N/A 32515491
    8533 6ah8:A (2.61) BS02 MN N/A GO:0016795 ... N/A 32515491
    8534 6ah8:B (2.61) BS01 MN N/A GO:0016795 ... N/A 32515491
    8535 6ah8:B (2.61) BS02 MN N/A GO:0016795 ... N/A 32515491
    8536 6ah8:C (2.61) BS01 MN N/A GO:0016795 ... N/A 32515491
    8537 6ah8:C (2.61) BS02 MN N/A GO:0016795 ... N/A 32515491
    8538 6ah8:D (2.61) BS01 MN N/A GO:0016795 ... N/A 32515491
    8539 6ah8:D (2.61) BS02 MN N/A GO:0016795 ... N/A 32515491
    8540 6ak5:A (1.7) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8541 6ak5:A (1.7) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8542 6ak6:A (1.75) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8543 6ak6:A (1.75) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8544 6akh:A (1.75) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8545 6akh:A (1.75) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    8546 6alz:A (2.208) BS01 MN 3.1.3.16 GO:0016787 ... P62136 29156132
    8547 6alz:A (2.208) BS02 MN 3.1.3.16 GO:0016787 ... P62136 29156132
    8548 6alz:B (2.208) BS01 MN 3.1.3.16 GO:0016787 ... P62136 29156132
    8549 6alz:B (2.208) BS02 MN 3.1.3.16 GO:0016787 ... P62136 29156132
    8550 6aob:B (1.7) BS01 MN ? GO:0009190 ... A0A060H1D7 29118188
    8551 6aoc:A (1.8) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 29031062
    8552 6aoc:A (1.8) BS02 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 29031062
    8553 6aoc:C (1.8) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 29031062
    8554 6aoc:C (1.8) BS02 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 29031062
    8555 6aq5:A (2.194) BS03 MN ? GO:0030246 ... Q6YD91 N/A
    8556 6aq5:B (2.194) BS03 MN ? GO:0030246 ... Q6YD91 N/A
    8557 6aq6:A (1.903) BS03 MN ? GO:0030246 ... Q6YD91 30086239
    8558 6aq6:B (1.903) BS03 MN ? GO:0030246 ... Q6YD91 30086239
    8559 6asc:A (2.15) BS01 MN 3.1.-.- GO:0004519 ... Q9X1X0 29523233
    8560 6asc:A (2.15) BS02 MN 3.1.-.- GO:0004519 ... Q9X1X0 29523233
    8561 6asc:B (2.15) BS01 MN 3.1.-.- GO:0004519 ... Q9X1X0 29523233
    8562 6asc:B (2.15) BS02 MN 3.1.-.- GO:0004519 ... Q9X1X0 29523233
    8563 6asi:A (1.789) BS02 MN 4.1.1.49 GO:0000287 ... P22259 30376300
    8564 6asm:A (1.55) BS02 MN 4.1.1.49 GO:0000287 ... P22259 30376300
    8565 6at2:A (1.444) BS02 MN 4.1.1.49 GO:0000287 ... P22259 30376300
    8566 6b2u:A (2.04) BS01 MN 2.3.3.20 GO:0004315 ... Q8PDX2 N/A
    8567 6b3a:A (1.784) BS02 MN ? N/A A0A1U7N2Z8 29096064
    8568 6b3b:A (1.85) BS02 MN ? N/A A0A1U7N2Z8 29096064
    8569 6b8w:B (1.9) BS01 MN ? N/A A0A0H3CJW2 N/A
    8570 6b9v:A (1.88) BS01 MN ? GO:0046872 ... Q1INB9 29229761
    8571 6b9v:A (1.88) BS02 MN ? GO:0046872 ... Q1INB9 29229761
    8572 6b9v:B (1.88) BS01 MN ? GO:0046872 ... Q1INB9 29229761
    8573 6b9v:B (1.88) BS02 MN ? GO:0046872 ... Q1INB9 29229761
    8574 6bej:A (1.894) BS01 MN N/A GO:0004784 ... N/A 30615696
    8575 6bej:E (1.894) BS01 MN N/A GO:0004784 ... N/A 30615696
    8576 6bg2:A (1.83) BS02 MN 2.7.11.12 GO:0004672 ... Q13976 N/A
    8577 6bg2:B (1.83) BS02 MN 2.7.11.12 GO:0004672 ... Q13976 N/A
    8578 6bg2:C (1.83) BS02 MN 2.7.11.12 GO:0004672 ... Q13976 N/A
    8579 6bg2:D (1.83) BS02 MN 2.7.11.12 GO:0004672 ... Q13976 N/A
    8580 6bgu:A (1.684) BS02 MN 1.14.11.67 N/A P29375 29537847
    8581 6bgv:A (1.592) BS02 MN 1.14.11.67 N/A P29375 29537847
    8582 6bgw:A (1.644) BS02 MN 1.14.11.67 N/A P29375 29537847
    8583 6bgx:A (1.882) BS02 MN 1.14.11.67 N/A P29375 29537847
    8584 6bgy:A (1.22) BS02 MN 1.14.11.67 N/A P29375 29537847
    8585 6bgz:A (1.688) BS02 MN 1.14.11.67 N/A P29375 29537847
    8586 6bh0:A (1.985) BS02 MN 1.14.11.67 N/A P29375 29537847
    8587 6bh1:A (1.932) BS02 MN 1.14.11.67 N/A P29375 29537847
    8588 6bh2:A (1.447) BS01 MN 1.14.11.67 N/A P29375 29537847
    8589 6bh3:A (1.701) BS02 MN 1.14.11.67 N/A P29375 29537847
    8590 6bh4:A (2.047) BS02 MN 1.14.11.67 N/A P29375 29537847
    8591 6bh5:A (1.651) BS02 MN 1.14.11.67 N/A P29375 29537847
    8592 6bsu:A (1.497) BS01 MN 2.4.2.39 GO:0016020 ... Q9LZJ3 29784804
    8593 6bsu:B (1.497) BS01 MN 2.4.2.39 GO:0016020 ... Q9LZJ3 29784804
    8594 6bsv:A (2.433) BS01 MN 2.4.2.39 GO:0016020 ... Q9LZJ3 29784804
    8595 6bsv:B (2.433) BS01 MN 2.4.2.39 GO:0016020 ... Q9LZJ3 29784804
    8596 6bsw:A (2.156) BS02 MN 2.4.2.39 GO:0016020 ... Q9LZJ3 29784804
    8597 6bsw:B (2.156) BS01 MN 2.4.2.39 GO:0016020 ... Q9LZJ3 29784804
    8598 6btd:A (1.551) BS01 MN N/A N/A N/A 30082730
    8599 6btg:A (1.698) BS01 MN N/A N/A N/A 30082730
    8600 6c33:A (1.8) BS01 MN ? GO:0003677 ... I7GAS0 29635474

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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