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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7801 5n62:B (1.8) BS01 MN ? GO:0005179 ... P02766 30213975
    7802 5n6x:A (1.75) BS01 MN ? GO:0016791 ... Q5GA16 28389563
    7803 5n6x:B (1.75) BS01 MN ? GO:0016791 ... Q5GA16 28389563
    7804 5n6x:B (1.75) BS02 MN ? GO:0016791 ... Q5GA16 28389563
    7805 5nbc:A (1.699) BS01 MN ? GO:0000976 ... Q5NIN6 30271974
    7806 5nbc:B (1.699) BS01 MN ? GO:0000976 ... Q5NIN6 30271974
    7807 5nbc:C (1.699) BS01 MN ? GO:0000976 ... Q5NIN6 30271974
    7808 5nbc:D (1.699) BS01 MN ? GO:0000976 ... Q5NIN6 30271974
    7809 5ncj:A (1.529) BS01 MN ? GO:0016491 ... A0A0E3URV8 29163906
    7810 5ncj:B (1.529) BS01 MN ? GO:0016491 ... A0A0E3URV8 29163906
    7811 5ndf:A (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    7812 5ndf:B (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    7813 5ndf:C (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    7814 5ndf:D (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    7815 5ndf:E (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    7816 5ndf:F (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    7817 5nfn:A (2.982) BS01 MN 1.14.11.63
    3.4.-.-
    GO:0004175 ... P0C870 N/A
    7818 5nfn:B (2.982) BS01 MN 1.14.11.63
    3.4.-.-
    GO:0004175 ... P0C870 N/A
    7819 5nfn:C (2.982) BS01 MN 1.14.11.63
    3.4.-.-
    GO:0004175 ... P0C870 N/A
    7820 5nfn:D (2.982) BS01 MN 1.14.11.63
    3.4.-.-
    GO:0004175 ... P0C870 N/A
    7821 5nfo:A (2.173) BS01 MN 1.14.11.63
    3.4.-.-
    GO:0004175 ... P0C870 N/A
    7822 5nfo:B (2.173) BS01 MN 1.14.11.63
    3.4.-.-
    GO:0004175 ... P0C870 N/A
    7823 5nh9:A (2.08) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7824 5nh9:A (2.08) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7825 5nh9:B (2.08) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7826 5nh9:B (2.08) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7827 5nh9:C (2.08) BS03 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7828 5nh9:C (2.08) BS04 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7829 5nh9:D (2.08) BS03 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7830 5nh9:D (2.08) BS04 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7831 5nha:A (1.8) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7832 5nha:A (1.8) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7833 5nha:B (1.8) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7834 5nha:B (1.8) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7835 5nha:C (1.8) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7836 5nha:C (1.8) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7837 5nha:D (1.8) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7838 5nha:D (1.8) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    7839 5nmp:A (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    7840 5nmp:B (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    7841 5nmp:C (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    7842 5nmp:D (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    7843 5nmp:E (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    7844 5nmp:F (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    7845 5nmp:G (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    7846 5nmp:H (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    7847 5nmp:I (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    7848 5nmp:J (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    7849 5nna:A (1.5) BS02 MN ? GO:0004061 ... A0P0F0 30166577
    7850 5nna:B (1.5) BS02 MN ? GO:0004061 ... A0P0F0 30166577
    7851 5nna:C (1.5) BS02 MN ? GO:0004061 ... A0P0F0 30166577
    7852 5nna:D (1.5) BS02 MN ? GO:0004061 ... A0P0F0 30166577
    7853 5nnb:A (1.8) BS01 MN ? GO:0004061 ... A0P0F0 30166577
    7854 5nnb:B (1.8) BS02 MN ? GO:0004061 ... A0P0F0 30166577
    7855 5nnb:C (1.8) BS01 MN ? GO:0004061 ... A0P0F0 30166577
    7856 5nnb:D (1.8) BS01 MN ? GO:0004061 ... A0P0F0 30166577
    7857 5npk:B (1.98) BS03 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    28507124
    7858 5npk:D (1.98) BS03 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    28507124
    7859 5npk:b (1.98) BS03 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    28507124
    7860 5npk:d (1.98) BS03 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    28507124
    7861 5npp:B (2.22) BS04 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    28507124
    7862 5npp:D (2.22) BS04 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    28507124
    7863 5nrg:3 (3.442) BS02 MN ? GO:0003735 ... Q2FXQ0 28973455
    7864 5nrz:A (2.05) BS01 MN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    7865 5nrz:A (2.05) BS02 MN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    7866 5nsm:A (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7867 5nsm:A (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7868 5nsm:B (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7869 5nsm:B (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7870 5nsm:C (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7871 5nsm:C (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7872 5nsm:D (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7873 5nsm:D (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7874 5nsm:E (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7875 5nsm:E (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7876 5nsm:F (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7877 5nsm:F (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7878 5nsm:G (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7879 5nsm:G (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7880 5nsm:H (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7881 5nsm:H (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7882 5nsm:I (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7883 5nsm:I (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7884 5nsm:J (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7885 5nsm:J (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7886 5nsm:K (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7887 5nsm:K (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7888 5nsm:L (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7889 5nsm:L (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    7890 5nsq:A (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7891 5nsq:A (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7892 5nsq:B (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7893 5nsq:B (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7894 5nsq:C (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7895 5nsq:C (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7896 5nsq:D (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7897 5nsq:D (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7898 5nsq:E (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7899 5nsq:E (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7900 5nsq:F (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7901 5nsq:F (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7902 5ntd:A (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7903 5ntd:A (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7904 5ntd:B (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7905 5ntd:B (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7906 5ntd:C (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7907 5ntd:C (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7908 5ntd:D (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7909 5ntd:D (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7910 5ntd:E (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7911 5ntd:E (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7912 5ntd:F (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7913 5ntd:F (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7914 5ntd:G (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7915 5ntd:G (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7916 5ntd:H (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7917 5ntd:H (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7918 5ntd:I (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7919 5ntd:I (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7920 5ntd:J (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7921 5ntd:J (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7922 5ntd:K (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7923 5ntd:K (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7924 5ntd:L (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    7925 5ntd:L (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    7926 5ntg:A (2.32) BS01 MN ? GO:0004177 ... V5BWE3 28815215
    7927 5ntg:B (2.32) BS01 MN ? GO:0004177 ... V5BWE3 28815215
    7928 5nth:A (2.5) BS02 MN 3.4.11.- GO:0004177 ... Q4QH17 28815215
    7929 5nth:A (2.5) BS03 MN 3.4.11.- GO:0004177 ... Q4QH17 28815215
    7930 5o1u:A (1.9) BS01 MN ? GO:0000166 ... Q9X1T1 29107484
    7931 5o1u:A (1.9) BS02 MN ? GO:0000166 ... Q9X1T1 29107484
    7932 5o1u:A (1.9) BS03 MN ? GO:0000166 ... Q9X1T1 29107484
    7933 5o1u:B (1.9) BS01 MN ? GO:0000166 ... Q9X1T1 29107484
    7934 5o1u:B (1.9) BS02 MN ? GO:0000166 ... Q9X1T1 29107484
    7935 5o1u:B (1.9) BS03 MN ? GO:0000166 ... Q9X1T1 29107484
    7936 5o25:A (1.75) BS01 MN ? GO:0000166 ... Q9X1T1 29107484
    7937 5o25:A (1.75) BS02 MN ? GO:0000166 ... Q9X1T1 29107484
    7938 5o25:B (1.75) BS02 MN ? GO:0000166 ... Q9X1T1 29107484
    7939 5o25:B (1.75) BS03 MN ? GO:0000166 ... Q9X1T1 29107484
    7940 5o3n:A (2.05) BS01 MN ? GO:0005737 ... B2DCZ6 28857436
    7941 5o3n:B (2.05) BS01 MN ? GO:0005737 ... B2DCZ6 28857436
    7942 5o5k:A (3.4) BS02 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7943 5o5k:A (3.4) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7944 5o5k:B (3.4) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7945 5o5k:C (3.4) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7946 5o5k:D (3.4) BS02 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7947 5o5k:D (3.4) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7948 5o5k:E (3.4) BS02 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7949 5o5k:E (3.4) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7950 5o5k:F (3.4) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7951 5o5k:G (3.4) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7952 5o5k:H (3.4) BS01 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7953 5o5k:I (3.4) BS01 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7954 5o5k:I (3.4) BS02 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7955 5o5k:J (3.4) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7956 5o5k:K (3.4) BS02 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7957 5o5l:A (2.7) BS02 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7958 5o5l:A (2.7) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7959 5o5l:B (2.7) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7960 5o5l:B (2.7) BS04 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7961 5o5l:C (2.7) BS02 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7962 5o5l:D (2.7) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7963 5o5l:D (2.7) BS04 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7964 5o5l:E (2.7) BS02 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7965 5o5l:E (2.7) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7966 5o5l:F (2.7) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7967 5o5l:G (2.7) BS01 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7968 5o5l:H (2.7) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7969 5o5l:H (2.7) BS04 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7970 5o5l:I (2.7) BS01 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7971 5o5l:J (2.7) BS03 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7972 5o5l:K (2.7) BS02 MN 4.6.1.1 GO:0009190 ... X8CHM4 29087332
    7973 5o6g:A (2.75) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7974 5o6g:A (2.75) BS05 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7975 5o6g:D (2.75) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7976 5o6g:D (2.75) BS05 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7977 5o6g:G (2.75) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7978 5o6g:G (2.75) BS05 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7979 5o6i:A (2.25) BS03 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7980 5o6i:A (2.25) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7981 5o6i:F (2.25) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7982 5o6i:F (2.25) BS05 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7983 5o6i:K (2.25) BS03 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7984 5o6i:K (2.25) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929
    7985 5o6n:A (1.35) BS02 MN ? GO:0030246 ... P02866 29199979
    7986 5o7f:A (1.9) BS02 MN ? GO:0000166 ... Q9X1T1 29107484
    7987 5o7f:A (1.9) BS03 MN ? GO:0000166 ... Q9X1T1 29107484
    7988 5o7f:B (1.9) BS02 MN ? GO:0000166 ... Q9X1T1 29107484
    7989 5o7f:B (1.9) BS03 MN ? GO:0000166 ... Q9X1T1 29107484
    7990 5oey:A (2.8) BS02 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    7991 5oey:A (2.8) BS03 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    7992 5oey:B (2.8) BS02 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    7993 5oey:B (2.8) BS03 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    7994 5oey:C (2.8) BS02 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    7995 5oey:C (2.8) BS03 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    7996 5oey:D (2.8) BS02 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    7997 5oey:D (2.8) BS03 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    7998 5of3:A (2.906) BS02 MN 2.7.7.- GO:0000428 ... Q97Z83 29167441
    7999 5of3:D (2.906) BS02 MN 2.7.7.- GO:0000428 ... Q97Z83 29167441
    8000 5ogl:A (2.7) BS02 MN 2.4.99.19 GO:0000287 ... B9KDD4 29058712

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218