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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 1gz4:C (2.2) BS04 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    602 1gz4:D (2.2) BS04 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    603 1gz9:A (1.7) BS04 MN ? GO:0030246 ... P83410 12139934
    604 1gzc:A (1.58) BS03 MN ? GO:0030246 ... P83410 12139934
    605 1h48:A (2.3) BS04 MN 4.6.1.12 GO:0005515 ... P62617 15608374
    606 1h48:C (2.3) BS02 MN 4.6.1.12 GO:0005515 ... P62617 15608374
    607 1h48:D (2.3) BS03 MN 4.6.1.12 GO:0005515 ... P62617 15608374
    608 1h9p:A (2.0) BS04 MN ? GO:0005537 ... P81637 11453695
    609 1h9w:A (2.0) BS01 MN ? GO:0005537 ... P81637 11453695
    610 1h9w:A (2.0) BS03 MN ? GO:0005537 ... P81637 11453695
    611 1h9w:B (2.0) BS01 MN ? GO:0005537 ... P81637 11453695
    612 1h9w:B (2.0) BS03 MN ? GO:0005537 ... P81637 11453695
    613 1hhs:A (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    614 1hhs:B (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    615 1hhs:C (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    616 1hht:P (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    617 1hht:Q (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    618 1hht:R (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    619 1hi0:P (3.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    620 1hi0:Q (3.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    621 1hi0:R (3.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    622 1hkd:A (2.09) BS02 MN ? GO:0030246 ... P02867 N/A
    623 1hkd:C (2.09) BS02 MN ? GO:0030246 ... P02867 N/A
    624 1ho5:A (2.1) BS01 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    625 1ho5:A (2.1) BS02 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    626 1ho5:B (2.1) BS01 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    627 1ho5:B (2.1) BS02 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    628 1hpu:A (1.85) BS01 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    629 1hpu:A (1.85) BS02 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    630 1hpu:B (1.85) BS01 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    631 1hpu:B (1.85) BS02 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    632 1hpu:C (1.85) BS01 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    633 1hpu:C (1.85) BS02 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    634 1hpu:D (1.85) BS01 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    635 1hpu:D (1.85) BS02 MN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 11491293
    636 1hq5:A (2.3) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258879
    637 1hq5:A (2.3) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258879
    638 1hq5:B (2.3) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258879
    639 1hq5:B (2.3) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258879
    640 1hqf:A (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    641 1hqf:A (2.9) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    642 1hqf:B (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    643 1hqf:B (2.9) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    644 1hqf:C (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    645 1hqf:C (2.9) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    646 1hqg:A (2.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    647 1hqg:A (2.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    648 1hqg:B (2.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    649 1hqg:B (2.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    650 1hqg:C (2.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    651 1hqg:C (2.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    652 1hqh:A (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    653 1hqh:A (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    654 1hqh:B (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    655 1hqh:B (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    656 1hqh:C (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    657 1hqh:C (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11258880
    658 1hql:A (2.2) BS02 MN ? GO:0030246 ... Q8W1R6 11714721
    659 1hql:B (2.2) BS02 MN ? GO:0030246 ... Q8W1R6 11714721
    660 1hqw:A (2.4) BS02 MN ? GO:0030246 ... P02866 11330349
    661 1hqx:A (3.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    662 1hqx:A (3.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    663 1hqx:B (3.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    664 1hqx:B (3.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    665 1hqx:C (3.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    666 1hqx:C (3.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 11278703
    667 1hto:A (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    668 1hto:B (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    669 1hto:C (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    670 1hto:D (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    671 1hto:E (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    672 1hto:F (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    673 1hto:G (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    674 1hto:H (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    675 1hto:I (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    676 1hto:J (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    677 1hto:K (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    678 1hto:L (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    679 1hto:M (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    680 1hto:N (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    681 1hto:O (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    682 1hto:P (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    683 1hto:Q (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    684 1hto:R (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    685 1hto:S (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    686 1hto:T (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    687 1hto:U (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    688 1hto:V (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    689 1hto:W (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    690 1hto:X (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    691 1htq:A (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    692 1htq:B (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    693 1htq:C (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    694 1htq:D (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    695 1htq:E (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    696 1htq:F (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    697 1htq:G (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    698 1htq:H (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    699 1htq:I (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    700 1htq:J (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    701 1htq:K (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    702 1htq:L (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    703 1htq:M (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    704 1htq:N (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    705 1htq:O (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    706 1htq:P (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    707 1htq:Q (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    708 1htq:R (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    709 1htq:S (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    710 1htq:T (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    711 1htq:U (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    712 1htq:V (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    713 1htq:W (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    714 1htq:X (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    715 1hx3:A (2.1) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11285217
    716 1hx3:B (2.1) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11285217
    717 1i08:A (2.2) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    718 1i08:B (2.2) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    719 1i08:C (2.2) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    720 1i08:D (2.2) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    721 1i0b:A (1.3) BS01 MN 3.1.8.1 GO:0004063 ... P0A434 11258882
    722 1i0b:A (1.3) BS02 MN 3.1.8.1 GO:0004063 ... P0A434 11258882
    723 1i0b:B (1.3) BS01 MN 3.1.8.1 GO:0004063 ... P0A434 11258882
    724 1i0b:B (1.3) BS02 MN 3.1.8.1 GO:0004063 ... P0A434 11258882
    725 1i0h:A (1.35) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    726 1i0h:B (1.35) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11294629
    727 1i19:B (1.7) BS01 MN 1.1.3.6 GO:0000166 ... Q7SID9 11397813
    728 1i3h:A (1.2) BS02 MN ? GO:0030246 ... P02866 11453694
    729 1i50:A (2.8) BS03 MN 2.7.7.6 GO:0000428 ... P04050 11313498
    730 1i5a:A (1.9) BS01 MN 2.7.13.3 GO:0016310 ... Q56310 11276258
    731 1i5a:B (1.9) BS01 MN 2.7.13.3 GO:0016310 ... Q56310 11276258
    732 1i5b:A (1.94) BS01 MN 2.7.13.3 GO:0016310 ... Q56310 11276258
    733 1i5b:B (1.94) BS01 MN 2.7.13.3 GO:0016310 ... Q56310 11276258
    734 1i74:A (2.2) BS01 MN 3.6.1.1 GO:0004427 ... O68579 11525166
    735 1i74:A (2.2) BS02 MN 3.6.1.1 GO:0004427 ... O68579 11525166
    736 1i74:B (2.2) BS01 MN 3.6.1.1 GO:0004427 ... O68579 11525166
    737 1i74:B (2.2) BS02 MN 3.6.1.1 GO:0004427 ... O68579 11525166
    738 1i9a:A (2.5) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11698677
    739 1i9a:B (2.5) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11698677
    740 1id3:C (3.1) BS03 MN ? GO:0000122 ... P04911 11566884
    741 1id3:D (3.1) BS02 MN ? GO:0000786 ... P02294 11566884
    742 1id3:E (3.1) BS03 MN ? GO:0000500 ... P61830 11566884
    743 1id3:G (3.1) BS03 MN ? GO:0000122 ... P04911 11566884
    744 1id3:G (3.1) BS04 MN ? GO:0000122 ... P04911 11566884
    745 1ig1:A (1.8) BS01 MN 2.7.11.1 GO:0004672 ... P53355 11573098
    746 1igv:A (1.85) BS01 MN ? GO:0005499 ... P02633 9194174
    747 1ii7:A (2.2) BS01 MN 3.1.-.- GO:0000729 ... Q8U1N9 11371344
    748 1ii7:A (2.2) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 11371344
    749 1ii7:B (2.2) BS01 MN 3.1.-.- GO:0000729 ... Q8U1N9 11371344
    750 1ii7:B (2.2) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 11371344
    751 1imc:A (2.6) BS01 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068621
    752 1imc:A (2.6) BS02 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068621
    753 1imc:B (2.6) BS01 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068621
    754 1imc:B (2.6) BS02 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068621
    755 1imc:B (2.6) BS03 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068621
    756 1imd:A (2.6) BS01 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068621
    757 1imd:A (2.6) BS02 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068621
    758 1imd:B (2.6) BS01 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068621
    759 1imd:B (2.6) BS02 MN 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068621
    760 1ino:A (2.2) BS01 MN 3.6.1.1 GO:0000287 ... P0A7A9 8543015
    761 1ips:A (2.5) BS01 MN 1.21.3.1 GO:0005506 ... P05326 7791906
    762 1ips:A (2.5) BS02 MN 1.21.3.1 GO:0005506 ... P05326 7791906
    763 1ips:B (2.5) BS01 MN 1.21.3.1 GO:0005506 ... P05326 7791906
    764 1ir6:A (2.9) BS01 MN 3.1.-.- GO:0003676 ... Q5SJ47 11972066
    765 1it6:A (2.0) BS01 MN 3.1.3.16 GO:0000070 ... P36873 12015153
    766 1it6:A (2.0) BS02 MN 3.1.3.16 GO:0000070 ... P36873 12015153
    767 1it6:B (2.0) BS01 MN 3.1.3.16 GO:0000070 ... P36873 12015153
    768 1it6:B (2.0) BS02 MN 3.1.3.16 GO:0000070 ... P36873 12015153
    769 1itw:A (1.95) BS01 MN 1.1.1.42 GO:0004450 ... P16100 12467571
    770 1itw:B (1.95) BS01 MN 1.1.1.42 GO:0004450 ... P16100 12467571
    771 1itw:C (1.95) BS01 MN 1.1.1.42 GO:0004450 ... P16100 12467571
    772 1itw:D (1.95) BS01 MN 1.1.1.42 GO:0004450 ... P16100 12467571
    773 1ix9:A (0.9) BS01 MN 1.15.1.1 GO:0003677 ... P00448 N/A
    774 1ix9:B (0.9) BS01 MN 1.15.1.1 GO:0003677 ... P00448 N/A
    775 1izl:J (3.7) BS01 MN 1.10.3.9 GO:0005506 ... P51765 12518057
    776 1j25:A (1.78) BS01 MN ? GO:0003677 ... Q8TZH8 12679022
    777 1j2t:A (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    778 1j2t:B (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    779 1j2t:C (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    780 1j2t:D (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    781 1j2t:E (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    782 1j2t:F (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    783 1j53:A (1.8) BS01 MN 2.7.7.7 GO:0003676 ... P03007 11937058
    784 1j54:A (1.7) BS01 MN 2.7.7.7 GO:0003676 ... P03007 11937058
    785 1j58:A (1.75) BS01 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    786 1j58:A (1.75) BS02 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    787 1ja8:A (2.12) BS01 MN 1.15.1.1 GO:0004784 ... P04179 11580280
    788 1ja8:B (2.12) BS01 MN 1.15.1.1 GO:0004784 ... P04179 11580280
    789 1jai:A (1.8) BS01 MN 3.6.5.2 GO:0003924 ... P01112 9102473
    790 1jaw:A (2.7) BS01 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    791 1jaw:A (2.7) BS02 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    792 1jbc:A (1.15) BS01 MN ? GO:0030246 ... P02866 15299577
    793 1jdb:B (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    794 1jdb:B (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    795 1jdb:B (2.1) BS04 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    796 1jdb:B (2.1) BS05 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    797 1jdb:E (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    798 1jdb:E (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    799 1jdb:E (2.1) BS04 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    800 1jdb:E (2.1) BS05 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10089390
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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