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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7401 5ggi:A (2.6) BS03 MN 2.4.1.- GO:0006486 ... Q8WZA1 27493216
    7402 5ggi:B (2.6) BS04 MN 2.4.1.- GO:0006486 ... Q8WZA1 27493216
    7403 5gjc:A (2.204) BS01 MN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A0U4DG08 27430951
    7404 5gl4:A (2.2) BS01 MN ? GO:0006536 ... B6YTD8 27907125
    7405 5gl4:A (2.2) BS02 MN ? GO:0006536 ... B6YTD8 27907125
    7406 5gl4:B (2.2) BS01 MN ? GO:0006536 ... B6YTD8 27907125
    7407 5gl4:B (2.2) BS02 MN ? GO:0006536 ... B6YTD8 27907125
    7408 5gl4:C (2.2) BS01 MN ? GO:0006536 ... B6YTD8 27907125
    7409 5gl4:C (2.2) BS02 MN ? GO:0006536 ... B6YTD8 27907125
    7410 5gl4:D (2.2) BS01 MN ? GO:0006536 ... B6YTD8 27907125
    7411 5gl4:D (2.2) BS02 MN ? GO:0006536 ... B6YTD8 27907125
    7412 5gl4:E (2.2) BS01 MN ? GO:0006536 ... B6YTD8 27907125
    7413 5gl4:E (2.2) BS02 MN ? GO:0006536 ... B6YTD8 27907125
    7414 5gl4:F (2.2) BS01 MN ? GO:0006536 ... B6YTD8 27907125
    7415 5gl4:F (2.2) BS02 MN ? GO:0006536 ... B6YTD8 27907125
    7416 5gl4:F (2.2) BS03 MN ? GO:0006536 ... B6YTD8 27907125
    7417 5gt0:C (2.82) BS03 MN ? GO:0000781 ... Q96QV6 27992841
    7418 5gt0:D (2.82) BS03 MN ? GO:0000786 ... P62807 27992841
    7419 5gt3:G (2.91) BS03 MN ? GO:0000786 ... P20671 27992841
    7420 5gvv:A (1.95) BS01 MN N/A GO:0016757 ... N/A 28246170
    7421 5gvv:F (1.95) BS01 MN N/A GO:0016757 ... N/A 28246170
    7422 5gvw:A (2.4) BS01 MN N/A GO:0016757 ... N/A 28246170
    7423 5gvw:B (2.4) BS01 MN N/A GO:0016757 ... N/A 28246170
    7424 5gvw:C (2.4) BS01 MN N/A GO:0016757 ... N/A 28246170
    7425 5gvw:D (2.4) BS01 MN N/A GO:0016757 ... N/A 28246170
    7426 5gxo:A (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 28711502
    7427 5gxo:B (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 28711502
    7428 5h0o:A (1.53) BS01 MN ? GO:0003676 ... A0A1U7Q1S7 28211904
    7429 5h1w:A (1.631) BS02 MN 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    7430 5h1w:B (1.631) BS02 MN 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    7431 5h60:A (3.64) BS02 MN 2.4.1.- GO:0005576 ... Q9L9J3 30327479
    7432 5h62:A (1.66) BS01 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7433 5h62:B (1.66) BS01 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7434 5h62:B (1.66) BS03 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7435 5h63:A (1.92) BS02 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7436 5h63:A (1.92) BS03 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7437 5h63:B (1.92) BS02 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7438 5h63:B (1.92) BS03 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7439 5h63:C (1.92) BS01 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7440 5h63:C (1.92) BS03 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7441 5h63:D (1.92) BS01 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7442 5h63:D (1.92) BS03 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    7443 5h6h:A (1.446) BS01 MN 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    7444 5h6h:B (1.446) BS01 MN 5.1.3.-
    5.3.1.-
    GO:0006020 ... Q9WYP7 28258150
    7445 5hbm:A (3.043) BS02 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 N/A
    7446 5hbm:A (3.043) BS03 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 N/A
    7447 5hj9:A (1.28) BS01 MN 3.5.3.1 GO:0000050 ... Q6TUJ5 27050264
    7448 5hj9:A (1.28) BS02 MN 3.5.3.1 GO:0000050 ... Q6TUJ5 27050264
    7449 5hja:A (1.65) BS01 MN 3.5.3.1 GO:0000050 ... Q6TUJ5 27050264
    7450 5hja:A (1.65) BS02 MN 3.5.3.1 GO:0000050 ... Q6TUJ5 27050264
    7451 5hpe:A (2.27) BS01 MN 3.1.3.16 GO:0016787 ... P53041
    Q16543
    27466404
    7452 5hpe:A (2.27) BS02 MN 3.1.3.16 GO:0016787 ... P53041
    Q16543
    27466404
    7453 5hrb:A (1.7) BS03 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7454 5hre:A (1.75) BS02 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7455 5hrf:A (2.25) BS02 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7456 5hrf:B (2.25) BS02 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7457 5hrg:A (2.0) BS03 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7458 5hrg:B (2.0) BS03 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7459 5hrh:A (3.0) BS04 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7460 5hrh:A (3.0) BS05 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7461 5hrh:B (3.0) BS04 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7462 5hrh:B (3.0) BS05 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7463 5hri:A (2.2) BS04 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7464 5hri:A (2.2) BS05 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7465 5hri:B (2.2) BS04 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7466 5hri:B (2.2) BS05 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7467 5hrk:A (2.9) BS04 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7468 5hrk:A (2.9) BS05 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7469 5hrk:B (2.9) BS04 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7470 5hrk:B (2.9) BS05 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7471 5hrl:A (2.4) BS04 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7472 5hrl:A (2.4) BS05 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7473 5hrl:B (2.4) BS04 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7474 5hrl:B (2.4) BS05 MN 2.7.7.7 GO:0003677 ... P42494 N/A
    7475 5hrm:A (2.051) BS01 MN ? N/A A0A077JBW9 27353520
    7476 5hrm:A (2.051) BS02 MN ? N/A A0A077JBW9 27353520
    7477 5hrm:B (2.051) BS01 MN ? N/A A0A077JBW9 27353520
    7478 5hrm:B (2.051) BS02 MN ? N/A A0A077JBW9 27353520
    7479 5hrm:C (2.051) BS01 MN ? N/A A0A077JBW9 27353520
    7480 5hrm:C (2.051) BS02 MN ? N/A A0A077JBW9 27353520
    7481 5hrm:D (2.051) BS01 MN ? N/A A0A077JBW9 27353520
    7482 5hrm:D (2.051) BS02 MN ? N/A A0A077JBW9 27353520
    7483 5huc:A (2.45) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    7484 5hud:A (2.15) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    7485 5hud:B (2.15) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    7486 5hud:C (2.15) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    7487 5hud:D (2.15) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    7488 5hue:A (2.65) BS01 MN 2.5.1.54 GO:0003849 ... Q8NNL5 29178787
    7489 5hwu:A (2.1) BS01 MN ? GO:0046872 ... Q9RS96 27739259
    7490 5hwu:B (2.1) BS02 MN ? GO:0046872 ... Q9RS96 27739259
    7491 5hwu:B (2.1) BS03 MN ? GO:0046872 ... Q9RS96 27739259
    7492 5hzz:A (1.801) BS01 MN ? GO:0046872 ... Q9RS96 27739259
    7493 5hzz:B (1.801) BS01 MN ? GO:0046872 ... Q9RS96 27739259
    7494 5hzz:C (1.801) BS02 MN ? GO:0046872 ... Q9RS96 27739259
    7495 5hzz:C (1.801) BS03 MN ? GO:0046872 ... Q9RS96 27739259
    7496 5hzz:D (1.801) BS02 MN ? GO:0046872 ... Q9RS96 27739259
    7497 5hzz:D (1.801) BS03 MN ? GO:0046872 ... Q9RS96 27739259
    7498 5i13:A (2.151) BS01 MN 3.1.-.- GO:0003723 ... P03433 27088785
    7499 5i13:A (2.151) BS02 MN 3.1.-.- GO:0003723 ... P03433 27088785
    7500 5i4k:A (1.79) BS01 MN ? GO:0005886 ... Q8Y653 N/A
    7501 5i4k:A (1.79) BS02 MN ? GO:0005886 ... Q8Y653 N/A
    7502 5i67:A (2.602) BS02 MN 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    7503 5ie9:A (2.8) BS01 MN ? GO:0046872 ... Q813T0 26920050
    7504 5ie9:B (2.8) BS01 MN ? GO:0046872 ... Q813T0 26920050
    7505 5ie9:C (2.8) BS01 MN ? GO:0046872 ... Q813T0 26920050
    7506 5ie9:D (2.8) BS01 MN ? GO:0046872 ... Q813T0 26920050
    7507 5isl:A (1.694) BS02 MN 1.14.11.67 N/A P29375 27427228
    7508 5ivb:A (1.389) BS02 MN 1.14.11.67 N/A P29375 27427228
    7509 5ivc:A (1.573) BS02 MN 1.14.11.67 N/A P29375 27427228
    7510 5ive:A (1.783) BS02 MN 1.14.11.67 N/A P29375 27427228
    7511 5ivf:A (1.683) BS02 MN 1.14.11.67 N/A P29375 27427228
    7512 5ivj:A (1.569) BS02 MN 1.14.11.67 N/A P29375 27427228
    7513 5ivv:A (1.848) BS02 MN 1.14.11.67 N/A P29375 27427228
    7514 5ivy:A (1.45) BS02 MN 1.14.11.67 N/A P29375 27427228
    7515 5iw0:A (1.63) BS03 MN 1.14.11.67 N/A P29375 27427228
    7516 5iwf:A (2.289) BS02 MN 1.14.11.67 N/A P29375 27427228
    7517 5iwi:B (1.98) BS03 MN 5.6.2.2 GO:0003677 ... P66937 27055939
    7518 5iwi:D (1.98) BS03 MN 5.6.2.2 GO:0003677 ... P66937 27055939
    7519 5iwm:B (2.5) BS03 MN 5.6.2.2 GO:0003677 ... P66937 27055939
    7520 5iwm:D (2.5) BS03 MN 5.6.2.2 GO:0003677 ... P66937 27055939
    7521 5izm:A (3.4) BS01 MN 3.6.5.- GO:0000049 ... P57772 27708257
    7522 5izm:B (3.4) BS01 MN 3.6.5.- GO:0000049 ... P57772 27708257
    7523 5izo:A (1.95) BS01 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... O34600 28894100
    7524 5izo:A (1.95) BS02 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... O34600 28894100
    7525 5izo:B (1.95) BS01 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... O34600 28894100
    7526 5izo:B (1.95) BS02 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... O34600 28894100
    7527 5izo:C (1.95) BS01 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... O34600 28894100
    7528 5izo:C (1.95) BS02 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... O34600 28894100
    7529 5izo:D (1.95) BS01 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... O34600 28894100
    7530 5izo:D (1.95) BS02 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... O34600 28894100
    7531 5j42:A (1.7) BS02 MN 3.1.4.- GO:0003824 ... Q9JJX7 27099339
    7532 5j42:B (1.7) BS02 MN 3.1.4.- GO:0003824 ... Q9JJX7 27099339
    7533 5j6f:A (2.75) BS01 MN 2.5.1.54
    5.4.99.5
    GO:0003849 ... L8A208 27502275
    7534 5j6f:B (2.75) BS01 MN 2.5.1.54
    5.4.99.5
    GO:0003849 ... L8A208 27502275
    7535 5j8l:A (1.73) BS01 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    7536 5j8l:B (1.73) BS02 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    7537 5j8l:C (1.73) BS01 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    7538 5j8l:D (1.73) BS02 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    7539 5jaz:A (1.4) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7540 5jaz:B (1.4) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7541 5jbi:A (1.7) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7542 5jbi:B (1.7) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7543 5jc1:A (1.65) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7544 5jc1:B (1.65) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7545 5jfr:A (1.6) BS01 MN 3.4.11.18 GO:0006508 ... P50579 27136719
    7546 5jfr:A (1.6) BS02 MN 3.4.11.18 GO:0006508 ... P50579 27136719
    7547 5jht:A (1.751) BS01 MN 3.1.-.- GO:0003723 ... P03433 N/A
    7548 5jht:A (1.751) BS02 MN 3.1.-.- GO:0003723 ... P03433 N/A
    7549 5jhu:A (1.8) BS01 MN 3.4.11.18 GO:0006508 ... P50579 27155900
    7550 5jhu:A (1.8) BS02 MN 3.4.11.18 GO:0006508 ... P50579 27155900
    7551 5jhv:A (2.749) BS01 MN 3.1.-.- GO:0003723 ... P03433 N/A
    7552 5jhv:A (2.749) BS02 MN 3.1.-.- GO:0003723 ... P03433 N/A
    7553 5jhv:B (2.749) BS01 MN 3.1.-.- GO:0003723 ... P03433 N/A
    7554 5jhv:B (2.749) BS02 MN 3.1.-.- GO:0003723 ... P03433 N/A
    7555 5ji6:A (2.15) BS01 MN 3.4.11.18 GO:0006508 ... P50579 27155900
    7556 5ji6:A (2.15) BS02 MN 3.4.11.18 GO:0006508 ... P50579 27155900
    7557 5jju:A (2.312) BS02 MN ? GO:0000166 ... A5U6I9 27371563
    7558 5jju:A (2.312) BS03 MN ? GO:0000166 ... A5U6I9 27371563
    7559 5jju:B (2.312) BS01 MN ? GO:0000166 ... A5U6I9 27371563
    7560 5jju:B (2.312) BS02 MN ? GO:0000166 ... A5U6I9 27371563
    7561 5jmp:A (1.7) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7562 5jmp:B (1.7) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7563 5jmw:A (1.55) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7564 5jmw:B (1.55) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7565 5jnl:A (1.6) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7566 5jnl:B (1.6) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7567 5jo0:A (1.8) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7568 5jo0:B (1.8) BS02 MN 1.1.1.267 GO:0008299 ... Q8IKG4 27487410
    7569 5jpf:A (2.3993) BS02 MN 3.1.3.16 GO:0004722 ... C4YM68 27578752
    7570 5jpf:A (2.3993) BS03 MN 3.1.3.16 GO:0004722 ... C4YM68 27578752
    7571 5jqk:A (2.35) BS01 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    7572 5jqk:A (2.35) BS02 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    7573 5jqk:B (2.35) BS01 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    7574 5jqk:B (2.35) BS02 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    7575 5jqy:A (1.99) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 31659163
    7576 5jr6:A (2.3) BS02 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    7577 5jr6:A (2.3) BS03 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    7578 5jr6:B (2.3) BS01 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    7579 5jr6:B (2.3) BS02 MN 3.4.11.9 GO:0070006 ... A0A144A2H0 27462122
    7580 5jsx:A (2.81) BS01 MN 2.4.1.266 GO:0016757 ... A5U1Q6 28625787
    7581 5jt0:A (2.8) BS01 MN 2.4.1.266 GO:0000287 ... P9WMW9 28625787
    7582 5jtc:A (2.24) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 32457455
    7583 5juc:A (2.8) BS02 MN 2.4.1.266 GO:0000287 ... P9WMW9 28625787
    7584 5jz6:A (2.354) BS01 MN 1.14.11.16 GO:0018193 ... Q12797 31659163
    7585 5jz8:A (2.095) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 31659163
    7586 5jza:A (2.14) BS01 MN 1.14.11.16 GO:0018193 ... Q12797 31659163
    7587 5jzu:A (2.5) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 31659163
    7588 5k8i:A (1.694) BS02 MN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A146CJG7 27915293
    7589 5k8k:A (2.55) BS01 MN 3.6.1.54 GO:0005737 ... P44046 27780190
    7590 5k8k:A (2.55) BS02 MN 3.6.1.54 GO:0005737 ... P44046 27780190
    7591 5k8o:A (2.893) BS01 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    7592 5k8o:B (2.893) BS01 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    7593 5k8o:C (2.893) BS01 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    7594 5k8o:D (2.893) BS02 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    7595 5k8o:E (2.893) BS02 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    7596 5k8o:F (2.893) BS01 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    7597 5k8o:G (2.893) BS02 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    7598 5k8o:H (2.893) BS02 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    7599 5k8u:A (1.601) BS02 MN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A146CJG7 27915293
    7600 5kfb:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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