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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7201 5ega:A (2.15) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 27510745
    7202 5ega:A (2.15) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 27510745
    7203 5ej4:A (1.773) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7204 5ej4:B (1.773) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7205 5ej4:C (1.773) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7206 5ej4:D (1.773) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7207 5ej4:E (1.773) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7208 5ej4:F (1.773) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7209 5ej4:G (1.773) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7210 5ej4:H (1.773) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7211 5ej5:A (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7212 5ej5:B (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7213 5ej5:C (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7214 5ej5:D (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7215 5ej5:E (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7216 5ej5:F (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7217 5ej5:G (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7218 5ej5:H (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7219 5ej6:A (2.243) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7220 5ej6:B (2.243) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7221 5ej6:C (2.243) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7222 5ej6:D (2.243) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7223 5ej6:E (2.243) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7224 5ej6:F (2.243) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7225 5ej6:G (2.243) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7226 5ej6:H (2.243) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7227 5ej7:A (1.56) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7228 5ej7:B (1.56) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7229 5ej7:C (1.56) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7230 5ej7:D (1.56) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7231 5ej7:E (1.56) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7232 5ej7:F (1.56) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7233 5ej7:G (1.56) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7234 5ej7:H (1.56) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7235 5ej8:A (1.34) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7236 5ej8:B (1.34) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7237 5ej8:C (1.34) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7238 5ej8:D (1.34) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7239 5ej8:E (1.34) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7240 5ej8:F (1.34) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7241 5ej8:G (1.34) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7242 5ej8:H (1.34) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7243 5ej9:A (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7244 5ej9:B (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7245 5ej9:C (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7246 5ej9:D (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7247 5ej9:E (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7248 5ej9:F (1.72) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7249 5ej9:G (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7250 5ej9:H (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7251 5eja:A (1.6) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7252 5eja:B (1.6) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7253 5eja:C (1.6) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7254 5eja:D (1.6) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7255 5eja:E (1.6) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7256 5eja:F (1.6) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7257 5eja:G (1.6) BS02 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7258 5eja:H (1.6) BS03 MN 2.2.1.9 GO:0000287 ... P17109 27213829
    7259 5ejm:A (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    7260 5ejm:B (1.72) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    7261 5ejm:C (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    7262 5ejm:D (1.72) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    7263 5ejm:E (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    7264 5ejm:F (1.72) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    7265 5ejm:G (1.72) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    7266 5ejm:H (1.72) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    7267 5er8:A (2.5) BS01 MN 2.5.1.29
    4.2.3.43
    N/A A2PZA5 26734760
    7268 5er8:A (2.5) BS02 MN 2.5.1.29
    4.2.3.43
    N/A A2PZA5 26734760
    7269 5er8:A (2.5) BS03 MN 2.5.1.29
    4.2.3.43
    N/A A2PZA5 26734760
    7270 5er8:B (2.5) BS01 MN 2.5.1.29
    4.2.3.43
    N/A A2PZA5 26734760
    7271 5er8:B (2.5) BS02 MN 2.5.1.29
    4.2.3.43
    N/A A2PZA5 26734760
    7272 5er8:B (2.5) BS03 MN 2.5.1.29
    4.2.3.43
    N/A A2PZA5 26734760
    7273 5er8:B (2.5) BS05 MN 2.5.1.29
    4.2.3.43
    N/A A2PZA5 26734760
    7274 5esd:A (2.25) BS01 MN 2.2.1.9 GO:0000287 ... P9WK11 27291649
    7275 5esd:B (2.25) BS02 MN 2.2.1.9 GO:0000287 ... P9WK11 27291649
    7276 5esd:C (2.25) BS03 MN 2.2.1.9 GO:0000287 ... P9WK11 27291649
    7277 5esd:D (2.25) BS02 MN 2.2.1.9 GO:0000287 ... P9WK11 27291649
    7278 5ex4:A (2.25) BS01 MN 2.5.1.54 GO:0003849 ... O53512 N/A
    7279 5ex4:B (2.25) BS02 MN 2.5.1.54 GO:0003849 ... O53512 N/A
    7280 5eyx:A (2.25) BS04 MN ? GO:0005537 ... C0HJX1 26946944
    7281 5eyx:B (2.25) BS04 MN ? GO:0005537 ... C0HJX1 26946944
    7282 5eyy:A (1.902) BS04 MN ? GO:0005537 ... C0HJX1 26946944
    7283 5f13:A (2.393) BS01 MN 3.1.3.- GO:0005634 ... Q04371 27322068
    7284 5f13:B (2.393) BS01 MN 3.1.3.- GO:0005634 ... Q04371 27322068
    7285 5f13:C (2.393) BS01 MN 3.1.3.- GO:0005634 ... Q04371 27322068
    7286 5f1m:A (2.322) BS01 MN 3.1.3.16 GO:0004722 ... Q9RL81 27499528
    7287 5f1m:A (2.322) BS02 MN 3.1.3.16 GO:0004722 ... Q9RL81 27499528
    7288 5f1m:A (2.322) BS03 MN 3.1.3.16 GO:0004722 ... Q9RL81 27499528
    7289 5f3o:B (2.05) BS01 MN ? GO:0004525 ... C4LU64 N/A
    7290 5f3o:B (2.05) BS02 MN ? GO:0004525 ... C4LU64 N/A
    7291 5f54:A (2.7) BS01 MN ? GO:0003676 ... D0EM60 27058167
    7292 5f54:A (2.7) BS02 MN ? GO:0003676 ... D0EM60 27058167
    7293 5f55:A (2.6) BS02 MN ? GO:0003676 ... D0EM60 27058167
    7294 5f55:A (2.6) BS03 MN ? GO:0003676 ... D0EM60 27058167
    7295 5f56:A (2.3) BS03 MN ? GO:0003676 ... D0EM60 27058167
    7296 5f56:A (2.3) BS04 MN ? GO:0003676 ... D0EM60 27058167
    7297 5f5q:A (2.52) BS02 MN ? GO:0005509 ... C0HJY1 27737777
    7298 5f5q:B (2.52) BS02 MN ? GO:0005509 ... C0HJY1 27737777
    7299 5fcf:A (1.85) BS02 MN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    7300 5fcf:A (1.85) BS03 MN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    7301 5fcf:B (1.85) BS02 MN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    7302 5fcf:B (1.85) BS03 MN 3.4.13.9 GO:0046872 ... Q8P839 27816563
    7303 5fdg:A (2.1) BS01 MN 3.1.-.- GO:0003723 ... P03433 27088785
    7304 5fdg:A (2.1) BS02 MN 3.1.-.- GO:0003723 ... P03433 27088785
    7305 5ffo:B (3.49) BS02 MN ? N/A P18564 28117447
    7306 5ffo:B (3.49) BS03 MN ? N/A P18564 28117447
    7307 5ffo:B (3.49) BS04 MN ? N/A P18564 28117447
    7308 5ffo:F (3.49) BS01 MN ? N/A P18564 28117447
    7309 5ffo:F (3.49) BS02 MN ? N/A P18564 28117447
    7310 5ffo:F (3.49) BS03 MN ? N/A P18564 28117447
    7311 5fh0:A (1.6) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 26709450
    7312 5fh1:A (1.55) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 26709450
    7313 5fh2:A (1.49) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 26709450
    7314 5fh3:A (1.6) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 26709450
    7315 5fh4:A (1.49) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 26709450
    7316 5fh4:A (1.49) BS02 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 26709450
    7317 5fh5:A (1.55) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 26709450
    7318 5fj6:A (7.9) BS01 MN 2.7.7.48 GO:0000166 ... P11124 26534841
    7319 5fj7:C (7.9) BS01 MN 2.7.7.48 GO:0000166 ... P11124 26534841
    7320 5fno:A (2.038) BS01 MN 1.13.11.-
    1.13.11.45
    1.13.11.58
    GO:0005576 ... G4NAP4 26783260
    7321 5fno:B (2.038) BS01 MN 1.13.11.-
    1.13.11.45
    1.13.11.58
    GO:0005576 ... G4NAP4 26783260
    7322 5fpl:A (2.35) BS02 MN 1.14.11.67 N/A Q9UGL1 26741168
    7323 5fpl:A (2.35) BS03 MN 1.14.11.67 N/A Q9UGL1 26741168
    7324 5fpu:A (2.24) BS04 MN 1.14.11.67 N/A Q9UGL1 27214403
    7325 5fpu:A (2.24) BS05 MN 1.14.11.67 N/A Q9UGL1 27214403
    7326 5fpv:A (2.44) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 27214403
    7327 5fpv:B (2.44) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 27214403
    7328 5fpv:C (2.44) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 27214403
    7329 5fpv:D (2.44) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 27214403
    7330 5fpv:E (2.44) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 27214403
    7331 5fpv:F (2.44) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 27214403
    7332 5fpv:G (2.44) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 27214403
    7333 5fpv:H (2.44) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 27214403
    7334 5fun:A (2.3) BS04 MN 1.14.11.67 N/A Q9UGL1 27214403
    7335 5fup:A (2.15) BS03 MN 1.14.11.67 N/A Q9UGL1 27214403
    7336 5fv3:A (2.37) BS02 MN 1.14.11.67 N/A Q9UGL1 27214403
    7337 5fv9:A (2.07) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 27071848
    7338 5fv9:B (2.07) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 27071848
    7339 5fv9:C (2.07) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 27071848
    7340 5fv9:D (2.07) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 27071848
    7341 5fv9:E (2.07) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 27071848
    7342 5fv9:F (2.07) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 27071848
    7343 5fwj:A (2.1) BS03 MN 1.14.11.67 N/A P41229 27214403
    7344 5fwj:B (2.1) BS03 MN 1.14.11.67 N/A P41229 27214403
    7345 5fx8:A (2.6) BS01 MN 1.13.11.-
    1.13.11.45
    GO:0016702 ... Q8X151 27313058
    7346 5fx8:B (2.6) BS01 MN 1.13.11.-
    1.13.11.45
    GO:0016702 ... Q8X151 27313058
    7347 5fxv:A (1.91) BS02 MN 1.14.11.68 N/A O14607 N/A
    7348 5fxv:B (1.91) BS02 MN 1.14.11.68 N/A O14607 N/A
    7349 5fxw:A (2.09) BS02 MN 1.14.11.68 N/A O14607 N/A
    7350 5fxw:B (2.09) BS02 MN 1.14.11.68 N/A O14607 N/A
    7351 5fxx:A (1.99) BS01 MN 1.14.11.68 N/A O14607 N/A
    7352 5fxx:B (1.99) BS01 MN 1.14.11.68 N/A O14607 N/A
    7353 5fxz:A (1.98) BS01 MN 1.14.11.68 N/A O14607 N/A
    7354 5fxz:B (1.98) BS01 MN 1.14.11.68 N/A O14607 N/A
    7355 5fy0:A (2.14) BS01 MN 1.14.11.68 N/A O14607 N/A
    7356 5fy0:B (2.14) BS01 MN 1.14.11.68 N/A O14607 N/A
    7357 5fy1:A (1.78) BS02 MN 1.14.11.68 N/A O14607 N/A
    7358 5fy1:B (1.78) BS02 MN 1.14.11.68 N/A O14607 N/A
    7359 5fy4:A (2.1) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    7360 5fy4:A (2.1) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7361 5fy5:A (2.47) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    7362 5fy5:A (2.47) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7363 5fy7:A (1.86) BS01 MN 1.14.11.68 N/A O14607 N/A
    7364 5fy7:B (1.86) BS01 MN 1.14.11.68 N/A O14607 N/A
    7365 5fy9:A (2.03) BS01 MN 1.14.11.67 N/A Q9UGL1 N/A
    7366 5fy9:A (2.03) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    7367 5fyb:A (1.87) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7368 5fyh:A (2.348) BS03 MN 1.14.11.66
    1.14.11.69
    N/A O75164 N/A
    7369 5fyh:B (2.348) BS03 MN 1.14.11.66
    1.14.11.69
    N/A O75164 N/A
    7370 5fym:A (2.0) BS01 MN 1.14.11.68 N/A O14607 N/A
    7371 5fym:B (2.0) BS01 MN 1.14.11.68 N/A O14607 N/A
    7372 5fys:A (1.89) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7373 5fyt:A (1.87) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7374 5fyu:A (2.06) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    7375 5fyv:A (1.87) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    7376 5fyy:A (2.18) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7377 5fyz:A (1.75) BS04 MN 1.14.11.67 N/A Q9UGL1 N/A
    7378 5fz0:A (2.42) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7379 5fz1:A (2.39) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7380 5fz3:A (2.5) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7381 5fz4:A (2.07) BS04 MN 1.14.11.67 N/A Q9UGL1 N/A
    7382 5fz6:A (2.33) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7383 5fz7:A (2.3) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7384 5fz8:A (1.86) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7385 5fz9:A (2.06) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7386 5fza:A (2.099) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7387 5fzb:A (2.18) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7388 5fzc:A (2.05) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7389 5fzd:A (2.05) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7390 5fze:A (2.02) BS04 MN 1.14.11.67 N/A Q9UGL1 N/A
    7391 5fze:A (2.02) BS05 MN 1.14.11.67 N/A Q9UGL1 N/A
    7392 5fzf:A (1.97) BS04 MN 1.14.11.67 N/A Q9UGL1 N/A
    7393 5fzg:A (1.96) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    7394 5fzh:A (2.09) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    7395 5fzi:A (1.95) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    7396 5fzk:A (2.05) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    7397 5fzl:A (2.55) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    7398 5fzm:A (2.49) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    7399 5fzo:A (1.84) BS01 MN 1.14.11.- GO:0032454 ... Q15652 N/A
    7400 5fzo:B (1.84) BS01 MN 1.14.11.- GO:0032454 ... Q15652 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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