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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7001 5bke:A (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    7002 5bke:B (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    7003 5bke:C (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    7004 5bke:D (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    7005 5bke:E (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    7006 5bke:F (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    7007 5bke:G (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    7008 5bpc:A (2.0) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26243878
    7009 5bpc:A (2.0) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26243878
    7010 5bs3:B (2.65) BS03 MN 5.6.2.2 GO:0003677 ... P0A0K8
    P20831
    25851938
    7011 5bs3:D (2.65) BS03 MN 5.6.2.2 GO:0003677 ... P0A0K8
    P20831
    25851938
    7012 5bte:A (2.4) BS02 MN 3.1.13.-
    3.6.1.-
    GO:0000166 ... Q753P9 26101253
    7013 5bte:A (2.4) BS03 MN 3.1.13.-
    3.6.1.-
    GO:0000166 ... Q753P9 26101253
    7014 5bte:B (2.4) BS02 MN 3.1.13.-
    3.6.1.-
    GO:0000166 ... Q753P9 26101253
    7015 5bte:B (2.4) BS03 MN 3.1.13.-
    3.6.1.-
    GO:0000166 ... Q753P9 26101253
    7016 5bud:A (1.99) BS02 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    7017 5bud:A (1.99) BS03 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    7018 5bud:B (1.99) BS02 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    7019 5bud:B (1.99) BS03 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    7020 5bxc:A (1.4) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7021 5byn:A (2.651) BS02 MN ? GO:0005515 ... P81460 N/A
    7022 5byn:B (2.651) BS04 MN ? GO:0005515 ... P81460 N/A
    7023 5c15:A (1.57) BS01 MN ? N/A Q716H3 26450964
    7024 5c15:A (1.57) BS02 MN ? N/A Q716H3 26450964
    7025 5c1g:A (1.46) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7026 5c1h:A (1.55) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7027 5c1l:A (1.4) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7028 5c2f:A (1.86) BS01 MN ? N/A Q716H3 26450964
    7029 5c2f:A (1.86) BS02 MN ? N/A Q716H3 26450964
    7030 5c36:A (1.55) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7031 5c38:A (1.45) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7032 5c39:A (1.751) BS01 MN N/A GO:0016491 ... N/A 26392146
    7033 5c39:B (1.751) BS01 MN N/A GO:0016491 ... N/A 26392146
    7034 5c3a:A (1.33) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7035 5c3b:A (1.4) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7036 5c3d:A (1.39) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7037 5c3m:A (3.059) BS01 MN 3.2.1.86 GO:0003824 ... W8R9V4 N/A
    7038 5c3m:B (3.059) BS01 MN 3.2.1.86 GO:0003824 ... W8R9V4 N/A
    7039 5c3m:C (3.059) BS01 MN 3.2.1.86 GO:0003824 ... W8R9V4 N/A
    7040 5c3m:D (3.059) BS01 MN 3.2.1.86 GO:0003824 ... W8R9V4 N/A
    7041 5c47:A (1.39) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7042 5c48:A (1.46) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7043 5c49:A (1.49) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7044 5c4d:A (1.4) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7045 5c4e:A (1.55) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7046 5c4f:A (1.41) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7047 5c5t:A (1.598) BS03 MN ? GO:0005506 ... Q84406 26368022
    7048 5c5u:A (1.7) BS01 MN ? GO:0005506 ... Q84406 26368022
    7049 5c5u:B (1.7) BS01 MN ? GO:0005506 ... Q84406 26368022
    7050 5c7s:A (2.1) BS01 MN 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    7051 5c7s:A (2.1) BS02 MN 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    7052 5c7s:B (2.1) BS01 MN 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    7053 5c7s:B (2.1) BS02 MN 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    7054 5c8r:A (1.45) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 26374898
    7055 5ccy:A (2.1) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7056 5ccy:A (2.1) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7057 5cdl:A (1.8) BS01 MN ? GO:0004177 ... Q9RUY4 N/A
    7058 5cdm:B (2.5) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7059 5cdm:D (2.5) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7060 5cdn:B (2.79) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7061 5cdn:D (2.79) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7062 5cdn:S (2.79) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7063 5cdn:U (2.79) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7064 5cdo:B (3.15) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7065 5cdo:D (3.15) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7066 5cdo:S (3.15) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7067 5cdo:U (3.15) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7068 5cdp:B (2.45) BS04 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7069 5cdp:D (2.45) BS04 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7070 5cdr:A (2.65) BS03 MN 5.6.2.2 GO:0003677 ... Q99XG5 26640131
    7071 5cdr:B (2.65) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7072 5cdr:D (2.65) BS03 MN 5.6.2.2 GO:0003677 ... P66937 26640131
    7073 5cdv:A (1.45) BS01 MN ? GO:0004177 ... Q9RUY4 N/A
    7074 5cet:A (2.0) BS01 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... P71615 26668313
    7075 5cet:A (2.0) BS02 MN 3.1.-.-
    3.1.3.7
    GO:0003676 ... P71615 26668313
    7076 5cev:A (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7077 5cev:A (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7078 5cev:B (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7079 5cev:B (2.5) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7080 5cev:C (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7081 5cev:C (2.5) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7082 5cev:D (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7083 5cev:D (2.5) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7084 5cev:E (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7085 5cev:E (2.5) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7086 5cev:F (2.5) BS04 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7087 5cev:F (2.5) BS05 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    7088 5cfs:A (1.7) BS01 MN ? N/A Q6X3H6 26900880
    7089 5cfs:A (1.7) BS02 MN ? N/A Q6X3H6 26900880
    7090 5cft:A (1.5) BS01 MN ? N/A Q6X3H6 26900880
    7091 5cft:A (1.5) BS02 MN ? N/A Q6X3H6 26900880
    7092 5cfu:A (1.82) BS01 MN ? N/A Q6X3H6 32100995
    7093 5cg8:A (2.702) BS04 MN 1.14.11.80 N/A D2W6T1 26323320
    7094 5cg9:A (2.693) BS04 MN 1.14.11.80 N/A D2W6T1 26323320
    7095 5cg9:D (2.693) BS04 MN 1.14.11.80 N/A D2W6T1 26323320
    7096 5cgv:A (2.17) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7097 5cgv:A (2.17) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7098 5ckv:A (2.787) BS02 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    7099 5ckv:B (2.787) BS02 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    7100 5ckx:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    7101 5ckx:B (2.7) BS02 MN 2.5.1.54 GO:0003849 ... O53512 26776476
    7102 5cl0:A (2.22) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7103 5cl0:A (2.22) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7104 5cna:A (2.0) BS02 MN ? GO:0030246 ... P02866 15299352
    7105 5cna:B (2.0) BS02 MN ? GO:0030246 ... P02866 15299352
    7106 5cna:C (2.0) BS02 MN ? GO:0030246 ... P02866 15299352
    7107 5cna:D (2.0) BS02 MN ? GO:0030246 ... P02866 15299352
    7108 5cnq:A (2.602) BS03 MN ? GO:0004518 ... G0RYN2 26686639
    7109 5cxr:A (2.002) BS01 MN 3.1.-.- GO:0003723 ... M9QLS3 26870381
    7110 5cxr:A (2.002) BS02 MN 3.1.-.- GO:0003723 ... M9QLS3 26870381
    7111 5cz0:A (2.5) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7112 5cz0:B (2.5) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7113 5cz0:C (2.5) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7114 5cz0:D (2.5) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7115 5czn:A (1.98) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7116 5czs:A (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7117 5czs:B (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7118 5czs:C (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7119 5czs:D (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7120 5czt:A (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7121 5czt:B (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7122 5czt:C (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7123 5czt:D (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7124 5d02:A (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7125 5d02:B (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7126 5d02:C (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7127 5d02:D (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7128 5d03:A (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7129 5d03:B (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7130 5d03:C (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7131 5d03:D (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7132 5d04:C (1.7) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7133 5d04:D (1.7) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7134 5d05:A (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7135 5d05:B (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7136 5d05:C (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7137 5d05:D (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7138 5d09:A (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7139 5d09:B (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7140 5d09:C (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7141 5d09:D (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7142 5d2c:A (2.06) BS01 MN ? GO:0000155 ... P0AE68 26569142
    7143 5d2c:B (2.06) BS01 MN ? GO:0000155 ... P0AE68 26569142
    7144 5d2o:A (2.15) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7145 5d2o:A (2.15) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7146 5d42:A (2.0) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7147 5d42:A (2.0) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7148 5d4g:A (2.08) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7149 5d4g:A (2.08) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7150 5d8u:A (2.29) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7151 5d8u:A (2.29) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7152 5d9j:A (1.85) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7153 5d9j:A (1.85) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7154 5dbs:A (2.11) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7155 5dcb:A (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7156 5dcb:B (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7157 5dcb:C (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7158 5dcb:D (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7159 5dcd:A (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7160 5dcd:B (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7161 5dcd:C (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7162 5dcd:D (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    7163 5dce:A (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    7164 5dce:B (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    7165 5dce:C (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    7166 5dce:D (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    7167 5ddy:A (3.36) BS02 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    7168 5ddy:C (3.36) BS02 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    7169 5ddy:E (3.36) BS02 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    7170 5ddy:G (3.36) BS02 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    7171 5ddy:G (3.36) BS04 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    7172 5deb:A (2.14) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7173 5des:A (2.05) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7174 5des:A (2.05) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    7175 5dg0:A (1.8) BS03 MN 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    7176 5dg0:A (1.8) BS04 MN 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    7177 5dgc:A (1.94) BS02 MN ? GO:0000155 ... P0AE68 26569142
    7178 5dgc:B (1.94) BS01 MN ? GO:0000155 ... P0AE68 26569142
    7179 5dkf:A (1.94) BS01 MN ? GO:0000155 ... P0AE68 26569142
    7180 5dkf:B (1.94) BS01 MN ? GO:0000155 ... P0AE68 26569142
    7181 5dnl:A (1.53) BS01 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    7182 5dnl:B (1.53) BS01 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    7183 5dnl:C (1.53) BS02 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    7184 5dnx:A (1.8) BS01 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    7185 5dnx:B (1.8) BS02 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    7186 5dnx:C (1.8) BS02 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    7187 5e2l:A (2.5) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    7188 5e2l:B (2.5) BS02 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    7189 5e3t:A (3.3) BS02 MN 2.7.1.68 GO:0046488 ... Q503I3 27439870
    7190 5e3t:A (3.3) BS03 MN 2.7.1.68 GO:0046488 ... Q503I3 27439870
    7191 5e3u:A (3.6) BS02 MN 2.7.1.68 GO:0046488 ... Q503I3 27439870
    7192 5e40:A (2.05) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    7193 5e40:B (2.05) BS02 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    7194 5e4n:A (2.05) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    7195 5e4n:B (2.05) BS02 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    7196 5e5g:A (1.95) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    7197 5e5g:B (1.95) BS02 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    7198 5e6h:A (2.238) BS01 MN 1.14.11.67 N/A P29375 26645689
    7199 5e7z:A (2.4) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682
    7200 5e7z:B (2.4) BS01 MN 2.5.1.54 GO:0003849 ... O53512 27128682

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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