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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6801 4z73:L (3.3) BS02 MN 3.6.1.1 GO:0000287 ... P9WI55 26296329
    6802 4z73:L (3.3) BS03 MN 3.6.1.1 GO:0000287 ... P9WI55 26296329
    6803 4z73:L (3.3) BS04 MN 3.6.1.1 GO:0000287 ... P9WI55 26296329
    6804 4z7m:A (1.43) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 N/A
    6805 4z7m:B (1.43) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 N/A
    6806 4z7n:B (2.599) BS02 MN ? N/A P05106 26631735
    6807 4z7n:B (2.599) BS03 MN ? N/A P05106 26631735
    6808 4z7n:B (2.599) BS04 MN ? N/A P05106 26631735
    6809 4z7n:D (2.599) BS02 MN ? N/A P05106 26631735
    6810 4z7n:D (2.599) BS03 MN ? N/A P05106 26631735
    6811 4z7n:D (2.599) BS04 MN ? N/A P05106 26631735
    6812 4z7o:B (2.85) BS02 MN ? N/A P05106 26631735
    6813 4z7o:B (2.85) BS03 MN ? N/A P05106 26631735
    6814 4z7o:B (2.85) BS04 MN ? N/A P05106 26631735
    6815 4z7o:D (2.85) BS02 MN ? N/A P05106 26631735
    6816 4z7o:D (2.85) BS03 MN ? N/A P05106 26631735
    6817 4z7o:D (2.85) BS04 MN ? N/A P05106 26631735
    6818 4z7q:B (2.7) BS02 MN ? N/A P05106 26631735
    6819 4z7q:B (2.7) BS03 MN ? N/A P05106 26631735
    6820 4z7q:B (2.7) BS04 MN ? N/A P05106 26631735
    6821 4z7q:D (2.7) BS02 MN ? N/A P05106 26631735
    6822 4z7q:D (2.7) BS03 MN ? N/A P05106 26631735
    6823 4z7q:D (2.7) BS04 MN ? N/A P05106 26631735
    6824 4z8b:A (1.951) BS02 MN ? GO:0005537 ... P08902 26226421
    6825 4za4:A (1.22) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    6826 4za5:A (1.1) BS03 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    6827 4za7:A (1.1) BS03 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    6828 4za8:A (1.06) BS03 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    6829 4za9:A (1.01) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    6830 4zaa:A (1.242) BS03 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    6831 4zab:A (1.16) BS03 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    6832 4zac:A (1.65) BS01 MN 4.1.1.102 GO:0005737 ... Q03034 26083754
    6833 4zac:B (1.65) BS01 MN 4.1.1.102 GO:0005737 ... Q03034 26083754
    6834 4zac:C (1.65) BS01 MN 4.1.1.102 GO:0005737 ... Q03034 26083754
    6835 4zac:D (1.65) BS01 MN 4.1.1.102 GO:0005737 ... Q03034 26083754
    6836 4zad:A (2.46) BS01 MN 4.1.1.102 GO:0005737 ... B9WJ66 26083754
    6837 4zad:B (2.46) BS01 MN 4.1.1.102 GO:0005737 ... B9WJ66 26083754
    6838 4zb0:A (2.0) BS01 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6839 4zb0:A (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6840 4zb0:A (2.0) BS03 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6841 4zb0:B (2.0) BS01 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6842 4zb0:B (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6843 4zb0:B (2.0) BS03 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6844 4zb0:B (2.0) BS04 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6845 4zb2:A (2.0) BS01 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6846 4zb2:A (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6847 4zb5:A (2.0) BS01 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6848 4zb5:A (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6849 4zbc:A (2.0) BS01 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6850 4zbc:A (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6851 4zbc:A (2.0) BS03 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6852 4zbc:B (2.0) BS01 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6853 4zbc:B (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6854 4zbc:B (2.0) BS03 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    6855 4zda:A (2.8) BS01 MN 1.1.1.42 GO:0004450 ... A0QSZ3 N/A
    6856 4zda:B (2.8) BS01 MN 1.1.1.42 GO:0004450 ... A0QSZ3 N/A
    6857 4zda:C (2.8) BS01 MN 1.1.1.42 GO:0004450 ... A0QSZ3 N/A
    6858 4zda:D (2.8) BS01 MN 1.1.1.42 GO:0004450 ... A0QSZ3 N/A
    6859 4zda:E (2.8) BS01 MN 1.1.1.42 GO:0004450 ... A0QSZ3 N/A
    6860 4zda:F (2.8) BS01 MN 1.1.1.42 GO:0004450 ... A0QSZ3 N/A
    6861 4zhz:A (2.5) BS03 MN 3.1.-.- GO:0003723 ... P03433 27088785
    6862 4zi0:A (1.802) BS01 MN 3.1.-.- GO:0003723 ... P03433 27088785
    6863 4zi0:A (1.802) BS02 MN 3.1.-.- GO:0003723 ... P03433 27088785
    6864 4zng:A (2.25) BS01 MN 3.4.13.9 GO:0004177 ... A8WBX8 N/A
    6865 4zng:A (2.25) BS02 MN 3.4.13.9 GO:0004177 ... A8WBX8 N/A
    6866 4zng:B (2.25) BS01 MN 3.4.13.9 GO:0004177 ... A8WBX8 N/A
    6867 4zng:B (2.25) BS02 MN 3.4.13.9 GO:0004177 ... A8WBX8 N/A
    6868 4zng:C (2.25) BS01 MN 3.4.13.9 GO:0004177 ... A8WBX8 N/A
    6869 4zq9:A (2.6) BS03 MN 3.6.4.12 N/A P03132 26370092
    6870 4zqq:A (1.8) BS01 MN 3.1.-.- GO:0003723 ... P03433 27088785
    6871 4zqq:A (1.8) BS02 MN 3.1.-.- GO:0003723 ... P03433 27088785
    6872 4zs2:A (2.16) BS03 MN 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 26457839
    6873 4zs3:A (2.45) BS03 MN 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 26457839
    6874 4zvz:A (2.0) BS01 MN 3.1.3.16 GO:0016787 ... P53041 27002182
    6875 4zvz:A (2.0) BS02 MN 3.1.3.16 GO:0016787 ... P53041 27002182
    6876 4zvz:B (2.0) BS01 MN 3.1.3.16 GO:0016787 ... P53041 27002182
    6877 4zvz:B (2.0) BS02 MN 3.1.3.16 GO:0016787 ... P53041 27002182
    6878 4zvz:C (2.0) BS01 MN 3.1.3.16 GO:0016787 ... P53041 27002182
    6879 4zvz:C (2.0) BS02 MN 3.1.3.16 GO:0016787 ... P53041 27002182
    6880 4zvz:D (2.0) BS01 MN 3.1.3.16 GO:0016787 ... P53041 27002182
    6881 4zvz:D (2.0) BS02 MN 3.1.3.16 GO:0016787 ... P53041 27002182
    6882 4zwo:A (2.141) BS01 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6883 4zwo:A (2.141) BS02 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6884 4zwo:A (2.141) BS03 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6885 4zwo:A (2.141) BS04 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6886 4zwo:B (2.141) BS01 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6887 4zwo:B (2.141) BS02 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6888 4zwp:A (2.397) BS01 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6889 4zwp:A (2.397) BS02 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6890 4zwp:A (2.397) BS03 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6891 4zwp:B (2.397) BS01 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6892 4zwp:B (2.397) BS02 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6893 4zwu:A (2.2) BS01 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6894 4zwu:A (2.2) BS02 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6895 4zwu:B (2.2) BS02 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6896 4zwu:B (2.2) BS03 MN 3.1.8.1
    3.4.13.9
    3.8.2.2
    GO:0016795 ... Q44238 26418828
    6897 4zx2:A (1.23) BS01 MN 3.1.3.16 GO:0016787 ... P53041 27002182
    6898 4zx2:A (1.23) BS02 MN 3.1.3.16 GO:0016787 ... P53041 27002182
    6899 5a07:A (1.9) BS02 MN 2.4.1.- GO:0000026 ... P38131 26296208
    6900 5a07:B (1.9) BS02 MN 2.4.1.- GO:0000026 ... P38131 26296208
    6901 5a0m:A (2.9) BS05 MN 3.1.-.- GO:0004519 ... P03882 27303901
    6902 5a0m:A (2.9) BS06 MN 3.1.-.- GO:0004519 ... P03882 27303901
    6903 5a0m:A (2.9) BS07 MN 3.1.-.- GO:0004519 ... P03882 27303901
    6904 5a0m:B (2.9) BS05 MN 3.1.-.- GO:0004519 ... P03882 27303901
    6905 5a0m:B (2.9) BS06 MN 3.1.-.- GO:0004519 ... P03882 27303901
    6906 5a0m:B (2.9) BS07 MN 3.1.-.- GO:0004519 ... P03882 27303901
    6907 5a0w:A (2.2) BS04 MN 3.1.-.- GO:0004519 ... P21505 N/A
    6908 5a0w:D (2.2) BS04 MN 3.1.-.- GO:0004519 ... P21505 N/A
    6909 5a0w:G (2.2) BS04 MN 3.1.-.- GO:0004519 ... P21505 N/A
    6910 5a1f:A (2.1) BS03 MN 1.14.11.67 N/A Q9UGL1 27214403
    6911 5a1f:A (2.1) BS04 MN 1.14.11.67 N/A Q9UGL1 27214403
    6912 5a29:A (1.9) BS02 MN ? GO:0016829 ... Q7MCK3 26160170
    6913 5a3n:A (2.0) BS03 MN 1.14.11.67 N/A Q9UGL1 28262558
    6914 5a3n:A (2.0) BS04 MN 1.14.11.67 N/A Q9UGL1 28262558
    6915 5a3p:A (2.008) BS03 MN 1.14.11.67 N/A Q9UGL1 27214403
    6916 5a3p:A (2.008) BS04 MN 1.14.11.67 N/A Q9UGL1 27214403
    6917 5a3t:A (1.9) BS03 MN 1.14.11.67 N/A Q9UGL1 27214403
    6918 5a3u:A (3.3) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 26147748
    6919 5a3u:B (3.3) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 26147748
    6920 5a3u:C (3.3) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 26147748
    6921 5a3w:A (2.0) BS04 MN 1.14.11.67 N/A Q9UGL1 27214403
    6922 5a55:A (1.85) BS02 MN 3.2.1.97 GO:0030246 ... Q2MGH6 26304114
    6923 5a56:A (1.8) BS03 MN 3.2.1.97 GO:0030246 ... Q2MGH6 26304114
    6924 5a58:A (1.8) BS04 MN 3.2.1.97 GO:0030246 ... Q2MGH6 26304114
    6925 5a59:A (2.5) BS03 MN 3.2.1.97 GO:0030246 ... Q2MGH6 26304114
    6926 5a5a:A (1.75) BS03 MN 3.2.1.97 GO:0030246 ... Q2MGH6 26304114
    6927 5a61:A (1.5) BS02 MN 3.6.1.25 GO:0016787 ... P30871 26221030
    6928 5a61:A (1.5) BS03 MN 3.6.1.25 GO:0016787 ... P30871 26221030
    6929 5a66:A (2.05) BS02 MN 3.6.1.-
    3.6.1.25
    GO:0005524 ... Q9SIY3 26221030
    6930 5a66:B (2.05) BS02 MN 3.6.1.-
    3.6.1.25
    GO:0005524 ... Q9SIY3 26221030
    6931 5a67:A (1.3) BS01 MN 3.6.1.-
    3.6.1.25
    GO:0005524 ... Q9SIY3 26221030
    6932 5a68:A (1.67) BS01 MN 3.6.1.-
    3.6.1.25
    GO:0005524 ... Q9SIY3 26221030
    6933 5a68:A (1.67) BS02 MN 3.6.1.-
    3.6.1.25
    GO:0005524 ... Q9SIY3 26221030
    6934 5a68:A (1.67) BS03 MN 3.6.1.-
    3.6.1.25
    GO:0005524 ... Q9SIY3 26221030
    6935 5a74:B (2.5) BS04 MN 3.1.-.- GO:0004519 ... P56347 26363068
    6936 5a7n:A (2.39) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6937 5a7n:B (2.39) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6938 5a7o:A (2.15) BS03 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6939 5a7o:B (2.15) BS03 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6940 5a7p:A (2.28) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6941 5a7p:B (2.28) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6942 5a7q:A (2.0) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6943 5a7q:A (2.0) BS02 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6944 5a7q:B (2.0) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6945 5a7q:B (2.0) BS02 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6946 5a7s:A (2.2) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6947 5a7s:B (2.2) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6948 5a7w:A (2.27) BS02 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6949 5a7w:B (2.27) BS02 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6950 5a80:A (2.28) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6951 5a80:B (2.28) BS01 MN 1.14.11.66
    1.14.11.69
    N/A O75164 26699912
    6952 5a9g:A (1.35) BS01 MN 1.15.1.1 GO:0004784 ... A0A0M3KL50 26198187
    6953 5a9g:B (1.35) BS01 MN 1.15.1.1 GO:0004784 ... A0A0M3KL50 26198187
    6954 5ag2:A (1.77) BS01 MN 1.15.1.1 GO:0004784 ... P41977 26257399
    6955 5ag2:C (1.77) BS01 MN 1.15.1.1 GO:0004784 ... P41977 26257399
    6956 5ajp:A (1.65) BS03 MN 2.4.1.41 GO:0000139 ... Q10471 25939779
    6957 5ak9:A (2.601) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6958 5ak9:A (2.601) BS05 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6959 5ak9:E (2.601) BS06 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6960 5ak9:E (2.601) BS07 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6961 5ak9:J (2.601) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6962 5ak9:J (2.601) BS05 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6963 5akf:A (2.45) BS05 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6964 5akf:E (2.45) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6965 5akf:I (2.45) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6966 5akn:A (2.75) BS06 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6967 5akn:A (2.75) BS07 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6968 5akn:F (2.75) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6969 5akn:F (2.75) BS05 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6970 5akn:K (2.75) BS04 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6971 5akn:K (2.75) BS05 MN 3.1.-.- GO:0004519 ... P21505 26045557
    6972 5ava:A (3.0) BS02 MN ? GO:0030246 ... P05088 26971576
    6973 5ava:B (3.0) BS02 MN ? GO:0030246 ... P05088 26971576
    6974 5ava:C (3.0) BS03 MN ? GO:0030246 ... P05088 26971576
    6975 5ava:D (3.0) BS03 MN ? GO:0030246 ... P05088 26971576
    6976 5ava:E (3.0) BS02 MN ? GO:0030246 ... P05088 26971576
    6977 5ava:F (3.0) BS02 MN ? GO:0030246 ... P05088 26971576
    6978 5ava:G (3.0) BS02 MN ? GO:0030246 ... P05088 26971576
    6979 5ava:H (3.0) BS03 MN ? GO:0030246 ... P05088 26971576
    6980 5avn:A (1.03) BS01 MN 5.3.1.5 GO:0000287 ... P24300 22435400
    6981 5avn:B (1.03) BS01 MN 5.3.1.5 GO:0000287 ... P24300 22435400
    6982 5avp:A (2.9) BS01 MN 5.3.1.- GO:0046872 ... D2S5K0 N/A
    6983 5avp:B (2.9) BS01 MN 5.3.1.- GO:0046872 ... D2S5K0 N/A
    6984 5avp:C (2.9) BS01 MN 5.3.1.- GO:0046872 ... D2S5K0 N/A
    6985 5avp:D (2.9) BS01 MN 5.3.1.- GO:0046872 ... D2S5K0 N/A
    6986 5ay8:G (2.8) BS03 MN ? GO:0000786 ... P04908 27016736
    6987 5ay8:H (2.8) BS03 MN ? GO:0000786 ... P06899 27016736
    6988 5b31:A (2.2) BS03 MN ? GO:0000786 ... P68431 27358293
    6989 5b49:A (1.65) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    6990 5b49:A (1.65) BS02 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    6991 5b49:B (1.65) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    6992 5b49:B (1.65) BS02 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    6993 5b4c:A (1.96) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    6994 5b4c:B (1.96) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    6995 5bkb:A (1.582) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    6996 5bkb:B (1.582) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    6997 5bkc:A (1.8) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    6998 5bkc:B (1.8) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    6999 5bkd:A (1.9) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    7000 5bkd:B (1.9) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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