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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6401 4raf:A (2.001) BS01 MN 3.1.3.16 GO:0000122 ... P35813 25708299
    6402 4rag:A (1.85) BS01 MN 3.1.3.16 GO:0000122 ... P35813 25708299
    6403 4raz:A (1.9) BS01 MN ? GO:0000976 ... V6F4Q0 26134419
    6404 4raz:A (1.9) BS02 MN ? GO:0000976 ... V6F4Q0 26134419
    6405 4raz:B (1.9) BS01 MN ? GO:0000976 ... V6F4Q0 26134419
    6406 4raz:B (1.9) BS02 MN ? GO:0000976 ... V6F4Q0 26134419
    6407 4rb1:A (2.75) BS02 MN ? GO:0000976 ... V6F4Q0 26134419
    6408 4rb1:A (2.75) BS03 MN ? GO:0000976 ... V6F4Q0 26134419
    6409 4rb1:B (2.75) BS02 MN ? GO:0000976 ... V6F4Q0 26134419
    6410 4rb1:B (2.75) BS03 MN ? GO:0000976 ... V6F4Q0 26134419
    6411 4rb2:C (2.82) BS03 MN ? GO:0000976 ... V6F4Q0 26134419
    6412 4rb2:C (2.82) BS04 MN ? GO:0000976 ... V6F4Q0 26134419
    6413 4rb2:D (2.82) BS03 MN ? GO:0000976 ... V6F4Q0 26134419
    6414 4rb2:D (2.82) BS04 MN ? GO:0000976 ... V6F4Q0 26134419
    6415 4rb3:C (2.6) BS03 MN ? GO:0000976 ... V6F4Q0 26134419
    6416 4rb3:C (2.6) BS04 MN ? GO:0000976 ... V6F4Q0 26134419
    6417 4rb3:D (2.6) BS03 MN ? GO:0000976 ... V6F4Q0 26134419
    6418 4rb3:D (2.6) BS04 MN ? GO:0000976 ... V6F4Q0 26134419
    6419 4rcv:A (2.294) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    6420 4rcv:B (2.294) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    6421 4rfr:B (1.5) BS02 MN 1.14.11.33 GO:0005515 ... P05050 27015802
    6422 4rgc:A (1.05) BS02 MN N/A GO:0004146 ... N/A 25453083
    6423 4rhl:A (3.1) BS01 MN 3.5.3.1 GO:0004053 ... Q581Y0 25536859
    6424 4rhl:B (3.1) BS01 MN 3.5.3.1 GO:0004053 ... Q581Y0 25536859
    6425 4rhm:A (1.95) BS01 MN 3.5.3.1 GO:0004053 ... Q581Y0 25536859
    6426 4rhm:B (1.95) BS01 MN 3.5.3.1 GO:0004053 ... Q581Y0 25536859
    6427 4rhm:C (1.95) BS01 MN 3.5.3.1 GO:0004053 ... Q581Y0 25536859
    6428 4rla:A (2.94) BS01 MN 3.5.3.1 GO:0000050 ... P07824 9265637
    6429 4rla:B (2.94) BS01 MN 3.5.3.1 GO:0000050 ... P07824 9265637
    6430 4rla:C (2.94) BS01 MN 3.5.3.1 GO:0000050 ... P07824 9265637
    6431 4rpa:A (2.1) BS01 MN 3.6.1.1 GO:0004427 ... P65752 25576794
    6432 4rpa:A (2.1) BS02 MN 3.6.1.1 GO:0004427 ... P65752 25576794
    6433 4rpa:B (2.1) BS01 MN 3.6.1.1 GO:0004427 ... P65752 25576794
    6434 4rpa:B (2.1) BS02 MN 3.6.1.1 GO:0004427 ... P65752 25576794
    6435 4rq2:A (2.2) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25825995
    6436 4rq2:A (2.2) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25825995
    6437 4rq2:A (2.2) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25825995
    6438 4rq2:A (2.2) BS08 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25825995
    6439 4rq8:A (2.0) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25825995
    6440 4rq8:A (2.0) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25825995
    6441 4rq8:A (2.0) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25825995
    6442 4rq8:A (2.0) BS08 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25825995
    6443 4rti:A (1.8) BS01 MN ? GO:0005509 ... P12302 25704164
    6444 4ruh:A (2.25) BS02 MN 3.4.13.18 GO:0004180 ... Q96KP4 N/A
    6445 4ruh:A (2.25) BS03 MN 3.4.13.18 GO:0004180 ... Q96KP4 N/A
    6446 4ruh:B (2.25) BS03 MN 3.4.13.18 GO:0004180 ... Q96KP4 N/A
    6447 4ruh:B (2.25) BS04 MN 3.4.13.18 GO:0004180 ... Q96KP4 N/A
    6448 4ry5:A (2.71) BS01 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 25428878
    6449 4ry5:A (2.71) BS02 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 25428878
    6450 4ry5:B (2.71) BS01 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 25428878
    6451 4ry5:B (2.71) BS02 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 25428878
    6452 4tus:A (2.42) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25237188
    6453 4tus:A (2.42) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25237188
    6454 4u2a:A (1.74) BS02 MN ? GO:0030246 ... P81371 25499445
    6455 4u36:A (1.4) BS01 MN ? GO:0030246 ... P81371 25499445
    6456 4u87:A (3.8) BS01 MN ? GO:0003677 ... P13921 26875695
    6457 4u87:B (3.8) BS01 MN ? GO:0003677 ... P13921 26875695
    6458 4u87:C (3.8) BS01 MN ? GO:0003677 ... P13921 26875695
    6459 4u9n:B (2.2) BS01 MN ? GO:0006812 ... Q5SMG8 25367295
    6460 4ub5:A (2.15) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25409153
    6461 4ub5:A (2.15) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 25409153
    6462 4uc5:A (2.19) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26794122
    6463 4uc5:B (2.19) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26794122
    6464 4uc5:C (2.19) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26794122
    6465 4uc5:D (2.19) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26794122
    6466 4ucg:A (2.0) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    6467 4ucg:B (2.0) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    6468 4ucg:C (2.0) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    6469 4ucg:D (2.0) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    6470 4udo:A (2.22) BS01 MN ? GO:0007155 ... C6XF58 25641618
    6471 4uma:A (1.76) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6472 4uma:B (1.76) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6473 4uma:C (1.76) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6474 4uma:D (1.76) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6475 4umb:A (2.17) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6476 4umb:B (2.17) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6477 4umb:C (2.17) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6478 4umb:D (2.17) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6479 4umc:A (2.34) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6480 4umc:B (2.34) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6481 4umc:C (2.34) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6482 4umc:D (2.34) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 25245459
    6483 4un8:A (2.6) BS04 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6484 4un8:A (2.6) BS05 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6485 4un8:D (2.6) BS04 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6486 4un8:D (2.6) BS05 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6487 4un8:G (2.6) BS04 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6488 4un8:G (2.6) BS05 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6489 4un9:A (2.734) BS04 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6490 4un9:A (2.734) BS05 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6491 4un9:A (2.734) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6492 4un9:D (2.734) BS04 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6493 4un9:D (2.734) BS05 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6494 4un9:D (2.734) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6495 4un9:G (2.734) BS04 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6496 4un9:G (2.734) BS05 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6497 4un9:G (2.734) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6498 4una:A (2.3) BS05 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6499 4una:A (2.3) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6500 4una:A (2.3) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6501 4una:D (2.3) BS05 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6502 4una:D (2.3) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6503 4una:D (2.3) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6504 4una:G (2.3) BS05 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6505 4una:G (2.3) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6506 4una:G (2.3) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6507 4unb:A (2.55) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6508 4unb:A (2.55) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6509 4unb:A (2.55) BS08 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6510 4unb:D (2.55) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6511 4unb:D (2.55) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6512 4unb:D (2.55) BS08 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6513 4unb:G (2.55) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6514 4unb:G (2.55) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6515 4unb:G (2.55) BS08 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6516 4unc:A (2.3) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6517 4unc:A (2.3) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6518 4unc:A (2.3) BS08 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6519 4unc:D (2.3) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6520 4unc:D (2.3) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6521 4unc:D (2.3) BS08 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6522 4unc:G (2.3) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6523 4unc:G (2.3) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6524 4unc:G (2.3) BS08 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6525 4urr:A (1.95) BS03 MN 3.2.1.- N/A Q9XJP3 27045683
    6526 4urr:B (1.95) BS04 MN 3.2.1.- N/A Q9XJP3 27045683
    6527 4urr:C (1.95) BS04 MN 3.2.1.- N/A Q9XJP3 27045683
    6528 4urr:D (1.95) BS05 MN 3.2.1.- N/A Q9XJP3 27045683
    6529 4urr:E (1.95) BS04 MN 3.2.1.- N/A Q9XJP3 27045683
    6530 4urr:F (1.95) BS03 MN 3.2.1.- N/A Q9XJP3 27045683
    6531 4ut0:A (2.4) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6532 4ut0:A (2.4) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6533 4ut0:F (2.4) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6534 4ut0:F (2.4) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6535 4ut0:K (2.4) BS06 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6536 4ut0:K (2.4) BS07 MN 3.1.-.- GO:0004519 ... P21505 25486305
    6537 4ut2:A (1.96) BS01 MN 3.1.3.16 GO:0000070 ... P36873 26742780
    6538 4ut2:A (1.96) BS02 MN 3.1.3.16 GO:0000070 ... P36873 26742780
    6539 4ut2:B (1.96) BS01 MN 3.1.3.16 GO:0000070 ... P36873 26742780
    6540 4ut2:B (1.96) BS02 MN 3.1.3.16 GO:0000070 ... P36873 26742780
    6541 4ut3:A (2.19) BS01 MN 3.1.3.16 GO:0000070 ... P36873 26742780
    6542 4ut3:A (2.19) BS02 MN 3.1.3.16 GO:0000070 ... P36873 26742780
    6543 4ut3:B (2.19) BS01 MN 3.1.3.16 GO:0000070 ... P36873 26742780
    6544 4ut3:B (2.19) BS02 MN 3.1.3.16 GO:0000070 ... P36873 26742780
    6545 4uwd:A (1.721) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 25120187
    6546 4uwq:A (3.28) BS01 MN ? GO:0000166 ... Q72IT0 26655737
    6547 4uwq:A (3.28) BS02 MN ? GO:0000166 ... Q72IT0 26655737
    6548 4uwq:D (3.28) BS01 MN ? GO:0000166 ... Q72IT0 26655737
    6549 4uwq:D (3.28) BS02 MN ? GO:0000166 ... Q72IT0 26655737
    6550 4uwq:G (3.28) BS01 MN ? GO:0000166 ... Q72IT0 26655737
    6551 4uwq:G (3.28) BS02 MN ? GO:0000166 ... Q72IT0 26655737
    6552 4uwq:J (3.28) BS01 MN ? GO:0000166 ... Q72IT0 26655737
    6553 4uwq:J (3.28) BS02 MN ? GO:0000166 ... Q72IT0 26655737
    6554 4uxa:A (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6555 4uxa:B (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6556 4uxa:C (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6557 4uxa:D (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6558 4uxa:E (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6559 4uxa:F (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6560 4uxa:G (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6561 4uxa:H (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6562 4uxa:I (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6563 4uxa:J (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6564 4uxa:K (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6565 4uxa:L (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6566 4uxa:M (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6567 4uxa:N (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6568 4uxa:O (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6569 4uxa:P (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6570 4uxa:Q (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6571 4uxa:R (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6572 4uxa:S (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6573 4uxa:T (2.1) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    6574 4v0u:D (7.88) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6575 4v0u:D (7.88) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6576 4v0u:F (7.88) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6577 4v0u:F (7.88) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6578 4v0u:H (7.88) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6579 4v0u:H (7.88) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6580 4v0u:J (7.88) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6581 4v0u:J (7.88) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6582 4v0u:N (7.88) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6583 4v0u:N (7.88) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6584 4v0v:A (1.61) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6585 4v0v:C (1.61) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6586 4v0w:A (1.55) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6587 4v0w:A (1.55) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6588 4v0w:C (1.55) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6589 4v0w:C (1.55) BS03 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6590 4v0x:A (1.85) BS02 MN 3.1.3.16 GO:0000775 ... P63087 25774600
    6591 4v15:A (1.5) BS03 MN 4.1.2.42 GO:0008721 ... A0A0J9X243 25884707
    6592 4v15:B (1.5) BS03 MN 4.1.2.42 GO:0008721 ... A0A0J9X243 25884707
    6593 4w8y:A (3.0) BS02 MN ? GO:0000166 ... Q8U1S6 25280103
    6594 4w8y:A (3.0) BS03 MN ? GO:0000166 ... Q8U1S6 25280103
    6595 4w8y:A (3.0) BS04 MN ? GO:0000166 ... Q8U1S6 25280103
    6596 4w8y:A (3.0) BS05 MN ? GO:0000166 ... Q8U1S6 25280103
    6597 4w8y:B (3.0) BS02 MN ? GO:0000166 ... Q8U1S6 25280103
    6598 4w8y:B (3.0) BS03 MN ? GO:0000166 ... Q8U1S6 25280103
    6599 4w8y:B (3.0) BS04 MN ? GO:0000166 ... Q8U1S6 25280103
    6600 4w8y:B (3.0) BS05 MN ? GO:0000166 ... Q8U1S6 25280103

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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