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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 4lom:A (2.1) BS03 MN N/A GO:0000105 ... N/A N/A
    5802 4lpf:A (2.3) BS02 MN N/A GO:0000105 ... N/A N/A
    5803 4lpf:A (2.3) BS03 MN N/A GO:0000105 ... N/A N/A
    5804 4lr7:A (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5805 4lr7:A (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5806 4lr7:A (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5807 4lr7:B (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5808 4lr7:B (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5809 4lr7:B (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5810 4lr7:C (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5811 4lr7:C (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5812 4lr7:C (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5813 4lr8:A (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5814 4lr8:A (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5815 4lr8:A (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5816 4lr8:B (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5817 4lr8:B (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5818 4lr8:C (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5819 4lr8:C (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5820 4lr8:C (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5821 4lr9:A (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5822 4lr9:A (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5823 4lr9:A (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5824 4lr9:B (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5825 4lr9:B (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5826 4lr9:C (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5827 4lr9:C (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5828 4lr9:C (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5829 4lra:A (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5830 4lra:A (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5831 4lra:A (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5832 4lra:B (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5833 4lra:B (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5834 4lra:B (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5835 4lra:C (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5836 4lra:C (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5837 4lra:C (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5838 4lrb:A (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5839 4lrb:A (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5840 4lrb:A (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5841 4lrb:B (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5842 4lrb:B (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5843 4lrb:C (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5844 4lrb:C (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5845 4lrb:C (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5846 4lrc:A (1.89) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5847 4lrc:A (1.89) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5848 4lrc:A (1.89) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5849 4lrc:B (1.89) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5850 4lrc:B (1.89) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5851 4lrc:C (1.89) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5852 4lrc:C (1.89) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5853 4lrc:C (1.89) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5854 4lrd:A (1.78) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5855 4lrd:A (1.78) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5856 4lrd:A (1.78) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5857 4lre:A (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5858 4lre:A (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5859 4lre:A (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5860 4lre:B (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5861 4lre:B (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5862 4lre:C (2.1) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5863 4lre:C (2.1) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5864 4lre:C (2.1) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5865 4lrf:A (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5866 4lrf:A (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5867 4lrf:A (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5868 4lrf:B (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5869 4lrf:B (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5870 4lrf:B (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5871 4lrf:C (2.0) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5872 4lrf:C (2.0) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5873 4lrf:C (2.0) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 24657930
    5874 4ls9:A (2.2) BS01 MN ? GO:0003676 ... A0QVM9 24878921
    5875 4ls9:B (2.2) BS01 MN ? GO:0003676 ... A0QVM9 24878921
    5876 4lt5:A (2.893) BS03 MN 1.14.11.80 GO:0003677 ... D2W6T1 24390346
    5877 4lta:A (2.04) BS01 MN 5.3.1.9 GO:0004347 ... P83194 N/A
    5878 4lta:B (2.04) BS01 MN 5.3.1.9 GO:0004347 ... P83194 N/A
    5879 4luk:A (1.41) BS01 MN 5.3.1.9 GO:0004347 ... P83194 N/A
    5880 4lul:A (1.89) BS01 MN 5.3.1.9 GO:0004347 ... P83194 N/A
    5881 4lul:B (1.89) BS01 MN 5.3.1.9 GO:0004347 ... P83194 N/A
    5882 4lum:A (1.79) BS01 MN 5.3.1.9 GO:0004347 ... P83194 N/A
    5883 4lum:B (1.79) BS01 MN 5.3.1.9 GO:0004347 ... P83194 N/A
    5884 4lvi:A (1.9) BS03 MN ? GO:0003677 ... P13925 28739894
    5885 4lvj:A (2.17) BS03 MN ? GO:0003677 ... P13925 28739894
    5886 4lvk:A (2.37) BS03 MN ? GO:0003677 ... P13925 28739894
    5887 4lvl:A (2.2) BS03 MN ? GO:0003677 ... P13925 28739894
    5888 4lvm:A (3.1) BS03 MN ? GO:0003677 ... P13925 28739894
    5889 4lvm:C (3.1) BS05 MN ? GO:0003677 ... P13925 28739894
    5890 4lvs:A (2.002) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    5891 4lvs:A (2.002) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 23827680
    5892 4lw3:A (2.0) BS01 MN 2.4.1.133 GO:0005975 ... Q9VBZ9 24052259
    5893 4lw6:A (2.4) BS02 MN 2.4.1.133 GO:0005975 ... Q9VBZ9 24052259
    5894 4m0a:A (1.85) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 24487959
    5895 4m0v:A (1.83) BS01 MN N/A GO:0004519 ... N/A 24531464
    5896 4m0v:A (1.83) BS02 MN N/A GO:0004519 ... N/A 24531464
    5897 4m0v:B (1.83) BS01 MN N/A GO:0004519 ... N/A 24531464
    5898 4m0v:B (1.83) BS02 MN N/A GO:0004519 ... N/A 24531464
    5899 4m0v:C (1.83) BS01 MN N/A GO:0004519 ... N/A 24531464
    5900 4m0v:C (1.83) BS02 MN N/A GO:0004519 ... N/A 24531464
    5901 4m0v:D (1.83) BS01 MN N/A GO:0004519 ... N/A 24531464
    5902 4m0v:D (1.83) BS02 MN N/A GO:0004519 ... N/A 24531464
    5903 4m0x:A (2.7) BS01 MN ? GO:0003824 ... Q8G9L1 24768773
    5904 4m0x:B (2.7) BS01 MN ? GO:0003824 ... Q8G9L1 24768773
    5905 4m1i:A (1.8) BS01 MN 1.17.4.1 GO:0004748 ... O84835 23924396
    5906 4m1i:B (1.8) BS02 MN 1.17.4.1 GO:0004748 ... O84835 23924396
    5907 4m1i:C (1.8) BS02 MN 1.17.4.1 GO:0004748 ... O84835 23924396
    5908 4m1i:D (1.8) BS02 MN 1.17.4.1 GO:0004748 ... O84835 23924396
    5909 4m3c:A (2.5) BS02 MN ? GO:0030246 ... H2L2M6 N/A
    5910 4m3c:B (2.5) BS02 MN ? GO:0030246 ... H2L2M7 N/A
    5911 4m3c:C (2.5) BS02 MN ? GO:0030246 ... H2L2M6 N/A
    5912 4m3c:D (2.5) BS03 MN ? GO:0030246 ... H2L2M7 N/A
    5913 4m3c:E (2.5) BS02 MN ? GO:0005509 ... P86352 N/A
    5914 4m3c:F (2.5) BS02 MN ? GO:0005509 ... P86353 N/A
    5915 4m3c:G (2.5) BS02 MN ? GO:0005509 ... P86352 N/A
    5916 4m3c:H (2.5) BS02 MN ? GO:0005509 ... P86353 N/A
    5917 4m4k:A (2.2) BS02 MN 2.4.1.133 GO:0005975 ... Q9VBZ9 24052259
    5918 4m4q:A (2.502) BS01 MN N/A GO:0003723 ... N/A 23978130
    5919 4m4q:A (2.502) BS02 MN N/A GO:0003723 ... N/A 23978130
    5920 4m5o:A (2.0) BS01 MN N/A GO:0003723 ... N/A 23978130
    5921 4m5o:A (2.0) BS02 MN N/A GO:0003723 ... N/A 23978130
    5922 4m5q:A (1.534) BS01 MN N/A GO:0003723 ... N/A 23978130
    5923 4m5q:A (1.534) BS02 MN N/A GO:0003723 ... N/A 23978130
    5924 4m5r:A (1.4) BS01 MN N/A GO:0003723 ... N/A 23978130
    5925 4m5u:A (2.2) BS01 MN N/A GO:0003723 ... N/A 24055080
    5926 4m5u:A (2.2) BS02 MN N/A GO:0003723 ... N/A 24055080
    5927 4m8d:A (1.9) BS01 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5928 4m8d:B (1.9) BS02 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5929 4m8d:C (1.9) BS01 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5930 4m8d:D (1.9) BS02 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5931 4m8d:E (1.9) BS01 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5932 4m8d:F (1.9) BS02 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5933 4m8d:G (1.9) BS01 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5934 4m8d:H (1.9) BS02 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5935 4m8d:I (1.9) BS01 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5936 4m8d:J (1.9) BS02 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5937 4m8d:K (1.9) BS01 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5938 4m8d:L (1.9) BS02 MN 3.5.2.20 GO:0004061 ... A0NLY7 24917679
    5939 4mda:A (1.7) BS01 MN 3.1.-.- GO:0003676 ... Q7JQ07 24397848
    5940 4mda:A (1.7) BS02 MN 3.1.-.- GO:0003676 ... Q7JQ07 24397848
    5941 4mk1:A (1.85) BS01 MN 3.1.-.- GO:0003723 ... M9V5A4 23978130
    5942 4mk1:A (1.85) BS02 MN 3.1.-.- GO:0003723 ... M9V5A4 23978130
    5943 4mk2:A (1.85) BS01 MN 3.1.-.- GO:0003723 ... M9V5A4 23978130
    5944 4mk2:A (1.85) BS02 MN 3.1.-.- GO:0003723 ... M9V5A4 23978130
    5945 4mk2:A (1.85) BS03 MN 3.1.-.- GO:0003723 ... M9V5A4 23978130
    5946 4mk5:A (1.9) BS01 MN 3.1.-.- GO:0003723 ... M9V5A4 23978130
    5947 4mk5:A (1.9) BS02 MN 3.1.-.- GO:0003723 ... M9V5A4 23978130
    5948 4mmx:A (3.32) BS02 MN ? GO:0001525 ... P06756 24658351
    5949 4mmx:A (3.32) BS03 MN ? GO:0001525 ... P06756 24658351
    5950 4mmx:A (3.32) BS04 MN ? GO:0001525 ... P06756 24658351
    5951 4mmx:A (3.32) BS05 MN ? GO:0001525 ... P06756 24658351
    5952 4mmx:A (3.32) BS06 MN ? GO:0001525 ... P06756 24658351
    5953 4mmx:B (3.32) BS01 MN ? GO:0001618 ... P05106 24658351
    5954 4mmx:B (3.32) BS02 MN ? GO:0001618 ... P05106 24658351
    5955 4mmx:B (3.32) BS03 MN ? GO:0001618 ... P05106 24658351
    5956 4mmy:A (3.183) BS03 MN ? GO:0001525 ... P06756 24658351
    5957 4mmy:A (3.183) BS04 MN ? GO:0001525 ... P06756 24658351
    5958 4mmy:A (3.183) BS05 MN ? GO:0001525 ... P06756 24658351
    5959 4mmy:A (3.183) BS06 MN ? GO:0001525 ... P06756 24658351
    5960 4mmy:A (3.183) BS07 MN ? GO:0001525 ... P06756 24658351
    5961 4mmy:B (3.183) BS02 MN ? GO:0001618 ... P05106 24658351
    5962 4mmy:B (3.183) BS03 MN ? GO:0001618 ... P05106 24658351
    5963 4mmy:B (3.183) BS04 MN ? GO:0001618 ... P05106 24658351
    5964 4mmz:A (3.1) BS01 MN ? GO:0001525 ... P06756 24658351
    5965 4mmz:A (3.1) BS02 MN ? GO:0001525 ... P06756 24658351
    5966 4mmz:A (3.1) BS03 MN ? GO:0001525 ... P06756 24658351
    5967 4mmz:A (3.1) BS04 MN ? GO:0001525 ... P06756 24658351
    5968 4mmz:A (3.1) BS05 MN ? GO:0001525 ... P06756 24658351
    5969 4mmz:B (3.1) BS01 MN ? GO:0001618 ... P05106 24658351
    5970 4mmz:B (3.1) BS02 MN ? GO:0001618 ... P05106 24658351
    5971 4mmz:B (3.1) BS03 MN ? GO:0001618 ... P05106 24658351
    5972 4mov:A (1.4503) BS01 MN 3.1.3.16 GO:0016787 ... P62136 24591642
    5973 4mov:A (1.4503) BS02 MN 3.1.3.16 GO:0016787 ... P62136 24591642
    5974 4mov:B (1.4503) BS01 MN 3.1.3.16 GO:0016787 ... P62136 24591642
    5975 4mov:B (1.4503) BS02 MN 3.1.3.16 GO:0016787 ... P62136 24591642
    5976 4moy:A (2.1953) BS01 MN 3.1.3.16 GO:0016787 ... P62136 24591642
    5977 4moy:A (2.1953) BS02 MN 3.1.3.16 GO:0016787 ... P62136 24591642
    5978 4mp0:A (2.1003) BS01 MN 3.1.3.16 GO:0016787 ... P62136 24591642
    5979 4mp0:A (2.1003) BS02 MN 3.1.3.16 GO:0016787 ... P62136 24591642
    5980 4mp0:C (2.1003) BS02 MN 3.1.3.16 GO:0016787 ... P62136 24591642
    5981 4mp0:C (2.1003) BS03 MN 3.1.3.16 GO:0016787 ... P62136 24591642
    5982 4mr0:A (1.95) BS02 MN ? N/A Q8CYC9 24321492
    5983 4mr0:A (1.95) BS03 MN ? N/A Q8CYC9 24321492
    5984 4mr0:A (1.95) BS04 MN ? N/A Q8CYC9 24321492
    5985 4mr0:B (1.95) BS02 MN ? N/A Q8CYC9 24321492
    5986 4mr0:B (1.95) BS03 MN ? N/A Q8CYC9 24321492
    5987 4mr0:B (1.95) BS04 MN ? N/A Q8CYC9 24321492
    5988 4mu0:A (1.3) BS01 MN 4.2.1.19 GO:0000105 ... O23346 26095028
    5989 4mu1:A (1.5) BS01 MN 4.2.1.19 GO:0000105 ... O23346 26095028
    5990 4mu3:A (1.12) BS01 MN 4.2.1.19 GO:0000105 ... O23346 26095028
    5991 4mu4:A (1.41) BS01 MN 4.2.1.19 GO:0000105 ... O23346 26095028
    5992 4mxr:A (1.849) BS01 MN 3.5.3.8 GO:0008783 ... Q4DSA0 24261485
    5993 4mxr:A (1.849) BS02 MN 3.5.3.8 GO:0008783 ... Q4DSA0 24261485
    5994 4mxr:B (1.849) BS01 MN 3.5.3.8 GO:0008783 ... Q4DSA0 24261485
    5995 4mxr:B (1.849) BS02 MN 3.5.3.8 GO:0008783 ... Q4DSA0 24261485
    5996 4my4:A (2.0) BS01 MN 5.4.2.12 GO:0003824 ... Q2G029 25611430
    5997 4my4:A (2.0) BS02 MN 5.4.2.12 GO:0003824 ... Q2G029 25611430
    5998 4mye:A (1.65) BS01 MN ? GO:0005537 ... P86184 N/A
    5999 4myf:A (1.799) BS01 MN 3.5.3.8 GO:0008783 ... Q4DSA0 24261485
    6000 4myf:A (1.799) BS02 MN 3.5.3.8 GO:0008783 ... Q4DSA0 24261485
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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