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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1f52:J (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    402 1f52:J (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    403 1f52:K (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    404 1f52:K (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    405 1f52:L (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    406 1f52:L (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    407 1f5a:A (2.5) BS01 MN 2.7.7.19 GO:0003723 ... P25500 10944102
    408 1f5a:A (2.5) BS02 MN 2.7.7.19 GO:0003723 ... P25500 10944102
    409 1f66:C (2.6) BS03 MN ? GO:0000786 ... P0C0S5 11101893
    410 1f66:G (2.6) BS03 MN ? GO:0000786 ... P0C0S5 11101893
    411 1f9c:A (2.5) BS01 MN 5.5.1.1 GO:0003824 ... Q51958 11080642
    412 1f9c:B (2.5) BS01 MN 5.5.1.1 GO:0003824 ... Q51958 11080642
    413 1f9k:A (3.0) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    414 1f9k:B (3.0) BS01 MN ? GO:0030246 ... Q9SM56 11183779
    415 1fa0:A (2.6) BS01 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    416 1fa0:A (2.6) BS02 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    417 1fa0:B (2.6) BS01 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    418 1fa0:B (2.6) BS02 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    419 1fat:A (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    420 1fat:B (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    421 1fat:C (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    422 1fat:D (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    423 1fay:A (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    424 1fay:B (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    425 1fay:C (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    426 1fay:D (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    427 1fay:E (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    428 1fay:F (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    429 1fay:G (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    430 1fay:H (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    431 1fbd:A (2.9) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    432 1fbd:A (2.9) BS02 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    433 1fbd:B (2.9) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    434 1fbd:B (2.9) BS02 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    435 1fbg:A (3.0) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    436 1fbg:B (3.0) BS01 MN 3.1.3.11 GO:0005737 ... P00636 8382525
    437 1ffg:A (2.1) BS01 MN ? GO:0000156 ... P0AE67 11134926
    438 1ffg:C (2.1) BS01 MN ? GO:0000156 ... P0AE67 11134926
    439 1ffs:A (2.4) BS01 MN 2.7.3.- GO:0000156 ... P0AE67 11134926
    440 1ffs:C (2.4) BS01 MN 2.7.3.- GO:0000156 ... P0AE67 11134926
    441 1ffw:A (2.7) BS01 MN ? GO:0000156 ... P0AE67 11134926
    442 1ffw:C (2.7) BS01 MN ? GO:0000156 ... P0AE67 11134926
    443 1fgg:A (2.3) BS03 MN 2.4.1.135 GO:0015018 ... O94766 10946001
    444 1fgg:B (2.3) BS01 MN 2.4.1.135 GO:0015018 ... O94766 10946001
    445 1fi2:A (1.6) BS01 MN 1.2.3.4 GO:0004784 ... P45850 11062559
    446 1fjm:A (2.1) BS02 MN 3.1.3.16 GO:0000164 ... P62139 7651533
    447 1fjm:A (2.1) BS03 MN 3.1.3.16 GO:0000164 ... P62139 7651533
    448 1fjm:B (2.1) BS02 MN 3.1.3.16 GO:0000164 ... P62139 7651533
    449 1fjm:B (2.1) BS03 MN 3.1.3.16 GO:0000164 ... P62139 7651533
    450 1fpd:A (2.1) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    451 1fpd:A (2.1) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    452 1fpd:B (2.1) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    453 1fpd:B (2.1) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    454 1fpe:A (2.2) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    455 1fpe:A (2.2) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    456 1fpe:B (2.2) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    457 1fpe:B (2.2) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    458 1fpf:A (2.1) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    459 1fpf:A (2.1) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    460 1fpf:B (2.1) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    461 1fpf:B (2.1) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    462 1fpg:A (2.3) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    463 1fpg:A (2.3) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    464 1fpg:B (2.3) BS01 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    465 1fpg:B (2.3) BS02 MN 3.1.3.11 GO:0005737 ... P00636 7703244
    466 1fpy:A (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    467 1fpy:A (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    468 1fpy:B (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    469 1fpy:B (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    470 1fpy:C (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    471 1fpy:C (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    472 1fpy:D (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    473 1fpy:D (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    474 1fpy:E (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    475 1fpy:E (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    476 1fpy:F (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    477 1fpy:F (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    478 1fpy:G (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    479 1fpy:G (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    480 1fpy:H (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    481 1fpy:H (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    482 1fpy:I (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    483 1fpy:I (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    484 1fpy:J (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    485 1fpy:J (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    486 1fpy:K (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    487 1fpy:K (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    488 1fpy:L (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    489 1fpy:L (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    490 1fqw:A (2.37) BS01 MN ? GO:0000156 ... P0AE67 11279165
    491 1fqw:B (2.37) BS01 MN ? GO:0000156 ... P0AE67 11279165
    492 1frw:A (1.75) BS01 MN 2.7.7.77 GO:0000287 ... P32173 10978347
    493 1fsa:A (2.3) BS02 MN 3.1.3.11 GO:0005737 ... P00636 8931152
    494 1fsa:B (2.3) BS02 MN 3.1.3.11 GO:0005737 ... P00636 8931152
    495 1fui:A (2.5) BS01 MN 5.3.1.25
    5.3.1.3
    GO:0005737 ... P69922 9367760
    496 1fui:B (2.5) BS01 MN 5.3.1.25
    5.3.1.3
    GO:0005737 ... P69922 9367760
    497 1fui:C (2.5) BS01 MN 5.3.1.25
    5.3.1.3
    GO:0005737 ... P69922 9367760
    498 1fui:D (2.5) BS01 MN 5.3.1.25
    5.3.1.3
    GO:0005737 ... P69922 9367760
    499 1fui:E (2.5) BS01 MN 5.3.1.25
    5.3.1.3
    GO:0005737 ... P69922 9367760
    500 1fx5:A (2.2) BS01 MN ? GO:0030246 ... P22972 11090284
    501 1fx5:B (2.2) BS01 MN ? GO:0030246 ... P22972 11090284
    502 1fyu:A (2.6) BS02 MN ? GO:0030246 ... P16404 11274466
    503 1fyu:B (2.6) BS02 MN ? GO:0030246 ... P16404 11274466
    504 1g0i:A (2.4) BS01 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    505 1g0i:A (2.4) BS02 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    506 1g0i:A (2.4) BS03 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    507 1g0i:B (2.4) BS01 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    508 1g0i:B (2.4) BS02 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    509 1g0i:B (2.4) BS03 MN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    510 1g15:A (1.9) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 11083878
    511 1g15:A (1.9) BS02 MN 3.1.26.4 GO:0000287 ... P0A7Y4 11083878
    512 1g5b:A (2.15) BS01 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    513 1g5b:A (2.15) BS02 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    514 1g5b:B (2.15) BS01 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    515 1g5b:B (2.15) BS02 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    516 1g5b:C (2.15) BS01 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    517 1g5b:C (2.15) BS02 MN 3.1.3.16 GO:0004721 ... P03772 11112522
    518 1g7y:A (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    519 1g7y:B (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    520 1g7y:C (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    521 1g7y:D (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    522 1g7y:E (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    523 1g7y:F (2.5) BS02 MN ? GO:0005537 ... P19588 11491289
    524 1g8o:A (2.3) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11179209
    525 1g8w:A (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    526 1g8w:B (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    527 1g8w:C (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    528 1g8w:D (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    529 1g93:A (2.5) BS02 MN 2.4.1.87 GO:0005975 ... P14769 11179209
    530 1g9f:A (2.5) BS02 MN ? GO:0030246 ... P05046 11491289
    531 1g9r:A (2.0) BS01 MN 2.4.1.- GO:0016740 ... Q93EK7 11175908
    532 1ga8:A (2.0) BS02 MN 2.4.1.44 GO:0016740 ... Q93EK7 11175908
    533 1gg1:A (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    534 1gg1:B (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    535 1gg1:C (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    536 1gg1:D (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    537 1gic:A (2.0) BS02 MN ? GO:0030246 ... P02866 15299735
    538 1gic:B (2.0) BS02 MN ? GO:0030246 ... P02866 15299735
    539 1gkb:A (1.56) BS01 MN ? GO:0030246 ... P02866 11976483
    540 1gkb:B (1.56) BS01 MN ? GO:0030246 ... P02866 11976483
    541 1gld:G (2.93) BS01 MN 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    542 1gn4:A (2.5) BS01 MN 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    543 1gn4:B (2.5) BS01 MN 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    544 1gn4:C (2.5) BS01 MN 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    545 1gn4:D (2.5) BS01 MN 1.15.1.1 GO:0004784 ... P9WGE7 9490054
    546 1gq2:A (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    547 1gq2:B (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    548 1gq2:C (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    549 1gq2:D (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    550 1gq2:E (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    551 1gq2:F (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    552 1gq2:G (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    553 1gq2:H (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    554 1gq2:I (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    555 1gq2:J (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    556 1gq2:K (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    557 1gq2:L (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    558 1gq2:M (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    559 1gq2:N (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    560 1gq2:O (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    561 1gq2:P (2.5) BS03 MN 1.1.1.40 GO:0004470 ... P40927 11790843
    562 1gq6:A (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    563 1gq6:A (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    564 1gq6:B (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    565 1gq6:B (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    566 1gq6:C (1.75) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    567 1gq6:C (1.75) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    568 1gq7:A (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    569 1gq7:A (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    570 1gq7:B (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    571 1gq7:B (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    572 1gq7:C (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    573 1gq7:C (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    574 1gq7:D (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    575 1gq7:D (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    576 1gq7:E (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    577 1gq7:E (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    578 1gq7:F (2.45) BS01 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    579 1gq7:F (2.45) BS02 MN 3.5.3.22 GO:0008783 ... P0DJQ3 12020346
    580 1gsl:A (2.0) BS05 MN ? GO:0030246 ... P24146 8478943
    581 1gv3:A (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q8Z0M1 12162960
    582 1gv3:B (2.0) BS01 MN 1.15.1.1 GO:0004784 ... Q8Z0M1 12162960
    583 1gwv:A (2.5) BS04 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    584 1gwv:B (2.5) BS04 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    585 1gww:A (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    586 1gww:B (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    587 1gx0:A (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    588 1gx0:B (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    589 1gx4:A (1.46) BS03 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    590 1gx4:B (1.46) BS03 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    591 1gx5:A (1.7) BS03 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    592 1gx5:A (1.7) BS04 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    593 1gx6:A (1.85) BS04 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    594 1gx6:A (1.85) BS05 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    595 1gz3:A (2.3) BS03 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    596 1gz3:B (2.3) BS03 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    597 1gz3:C (2.3) BS03 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    598 1gz3:D (2.3) BS03 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    599 1gz4:A (2.2) BS04 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    600 1gz4:B (2.2) BS05 MN 1.1.1.38 GO:0004470 ... P23368 12121650

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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