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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 4awh:A (2.05) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5002 4awh:B (2.05) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5003 4awh:B (2.05) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5004 4awh:C (2.05) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5005 4awh:C (2.05) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5006 4awh:D (2.05) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5007 4awh:D (2.05) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5008 4awk:A (1.9) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5009 4awk:A (1.9) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5010 4awm:A (2.6) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5011 4awm:A (2.6) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5012 4b02:A (3.3) BS01 MN 2.7.7.48 GO:0000166 ... P11124 22770923
    5013 4b02:B (3.3) BS01 MN 2.7.7.48 GO:0000166 ... P11124 22770923
    5014 4b02:C (3.3) BS01 MN 2.7.7.48 GO:0000166 ... P11124 22770923
    5015 4b5h:A (3.05) BS03 MN 3.1.11.2 GO:0003824 ... Q7DD47 23035246
    5016 4b5i:A (2.555) BS04 MN 3.1.11.2 GO:0003677 ... Q7DD47 23035246
    5017 4bif:A (2.46) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 23981508
    5018 4bif:B (2.46) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 23981508
    5019 4bif:C (2.46) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 23981508
    5020 4bif:D (2.46) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 23981508
    5021 4bif:E (2.46) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 23981508
    5022 4bif:F (2.46) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 23981508
    5023 4bif:G (2.46) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 23981508
    5024 4bif:H (2.46) BS01 MN 4.1.2.10 GO:0016829 ... E8WYN5 23981508
    5025 4bmu:A (1.9) BS01 MN 1.17.4.1 GO:0004748 ... Q81G55 24295378
    5026 4bmu:A (1.9) BS02 MN 1.17.4.1 GO:0004748 ... Q81G55 24295378
    5027 4bmu:B (1.9) BS01 MN 1.17.4.1 GO:0004748 ... Q81G55 24295378
    5028 4bmu:B (1.9) BS02 MN 1.17.4.1 GO:0004748 ... Q81G55 24295378
    5029 4bqw:A (1.79) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 23683440
    5030 4bqx:A (1.79) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 23683440
    5031 4bul:A (2.6) BS05 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    23968823
    5032 4bul:A (2.6) BS06 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    23968823
    5033 4bul:C (2.6) BS05 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    23968823
    5034 4bxf:A (2.05) BS02 MN 1.14.11.79 GO:0003714 ... Q8IUF8 24814345
    5035 4bxf:B (2.05) BS02 MN 1.14.11.79 GO:0003714 ... Q8IUF8 24814345
    5036 4bzc:A (2.88) BS02 MN 3.1.5.- N/A Q9Y3Z3 24141705
    5037 4bzc:B (2.88) BS02 MN 3.1.5.- N/A Q9Y3Z3 24141705
    5038 4bzc:C (2.88) BS05 MN 3.1.5.- N/A Q9Y3Z3 24141705
    5039 4bzc:D (2.88) BS05 MN 3.1.5.- N/A Q9Y3Z3 24141705
    5040 4c1l:A (1.8) BS01 MN 2.5.1.54 GO:0003849 ... Q8U0A9 24239948
    5041 4c1l:B (1.8) BS01 MN 2.5.1.54 GO:0003849 ... Q8U0A9 24239948
    5042 4c20:A (2.41) BS01 MN 5.3.1.25 GO:0005737 ... Q97N97 24333485
    5043 4c20:B (2.41) BS01 MN 5.3.1.25 GO:0005737 ... Q97N97 24333485
    5044 4c21:A (2.55) BS01 MN 5.3.1.25 GO:0005737 ... Q97N97 24333485
    5045 4c21:B (2.55) BS01 MN 5.3.1.25 GO:0005737 ... Q97N97 24333485
    5046 4c22:A (2.7) BS01 MN 5.3.1.25 GO:0005737 ... Q97N97 24333485
    5047 4c22:B (2.7) BS01 MN 5.3.1.25 GO:0005737 ... Q97N97 24333485
    5048 4c2s:A (2.48) BS03 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 N/A
    5049 4c2s:B (2.48) BS03 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 N/A
    5050 4c7u:A (1.951) BS01 MN 1.15.1.1 GO:0004784 ... O81235 N/A
    5051 4c7u:B (1.951) BS01 MN 1.15.1.1 GO:0004784 ... O81235 N/A
    5052 4c7u:C (1.951) BS01 MN 1.15.1.1 GO:0004784 ... O81235 N/A
    5053 4c7u:D (1.951) BS01 MN 1.15.1.1 GO:0004784 ... O81235 N/A
    5054 4c7u:E (1.951) BS01 MN 1.15.1.1 GO:0004784 ... O81235 N/A
    5055 4c7u:F (1.951) BS01 MN 1.15.1.1 GO:0004784 ... O81235 N/A
    5056 4c7u:G (1.951) BS01 MN 1.15.1.1 GO:0004784 ... O81235 N/A
    5057 4c7u:H (1.951) BS01 MN 1.15.1.1 GO:0004784 ... O81235 N/A
    5058 4c8d:A (2.18) BS01 MN 1.14.11.65 GO:0032454 ... Q7LBC6 N/A
    5059 4cck:A (2.15) BS01 MN 1.14.11.27
    1.14.11.79
    N/A Q9H6W3 24814345
    5060 4cck:B (2.15) BS01 MN 1.14.11.27
    1.14.11.79
    N/A Q9H6W3 24814345
    5061 4cck:C (2.15) BS01 MN 1.14.11.27
    1.14.11.79
    N/A Q9H6W3 24814345
    5062 4cck:D (2.15) BS01 MN 1.14.11.27
    1.14.11.79
    N/A Q9H6W3 24814345
    5063 4ccl:A (2.596) BS01 MN 1.14.11.47 GO:0005515 ... P27431 24814345
    5064 4ccl:B (2.596) BS01 MN 1.14.11.47 GO:0005515 ... P27431 24814345
    5065 4ccm:A (2.51) BS02 MN 1.14.11.27
    1.14.11.79
    N/A Q9H6W3 24814345
    5066 4ccm:B (2.51) BS02 MN 1.14.11.27
    1.14.11.79
    N/A Q9H6W3 24814345
    5067 4ccn:A (2.23) BS02 MN 1.14.11.27
    1.14.11.79
    N/A Q9H6W3 24814345
    5068 4ccn:B (2.23) BS02 MN 1.14.11.27
    1.14.11.79
    N/A Q9H6W3 24814345
    5069 4cco:A (2.3) BS02 MN 1.14.11.27
    1.14.11.79
    N/A Q9H6W3 24814345
    5070 4cco:B (2.3) BS02 MN 1.14.11.27
    1.14.11.79
    N/A Q9H6W3 24814345
    5071 4cev:A (2.7) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5072 4cev:A (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5073 4cev:B (2.7) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5074 4cev:B (2.7) BS04 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5075 4cev:C (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5076 4cev:C (2.7) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5077 4cev:D (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5078 4cev:D (2.7) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5079 4cev:E (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5080 4cev:E (2.7) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5081 4cev:F (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5082 4cev:F (2.7) BS03 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5083 4chg:A (2.1) BS03 MN 3.1.-.- GO:0000287 ... P9WF97 25450593
    5084 4chg:B (2.1) BS03 MN 3.1.-.- GO:0000287 ... P9WF97 25450593
    5085 4chg:D (2.1) BS01 MN 3.1.-.- GO:0000287 ... P9WF97 25450593
    5086 4chg:F (2.1) BS01 MN 3.1.-.- GO:0000287 ... P9WF97 25450593
    5087 4cl2:A (1.63) BS01 MN ? GO:0007155 ... C6XF58 25641618
    5088 4cmq:A (3.09) BS01 MN 3.1.-.- GO:0003676 ... Q99ZW2 24505130
    5089 4cmq:A (3.09) BS02 MN 3.1.-.- GO:0003676 ... Q99ZW2 24505130
    5090 4cmq:A (3.09) BS03 MN 3.1.-.- GO:0003676 ... Q99ZW2 24505130
    5091 4cmq:A (3.09) BS04 MN 3.1.-.- GO:0003676 ... Q99ZW2 24505130
    5092 4cmq:B (3.09) BS01 MN 3.1.-.- GO:0003676 ... Q99ZW2 24505130
    5093 4cmq:B (3.09) BS02 MN 3.1.-.- GO:0003676 ... Q99ZW2 24505130
    5094 4cmq:B (3.09) BS03 MN 3.1.-.- GO:0003676 ... Q99ZW2 24505130
    5095 4cmq:B (3.09) BS04 MN 3.1.-.- GO:0003676 ... Q99ZW2 24505130
    5096 4csw:B (2.821) BS01 MN ? GO:0016706 ... D0MK34 24814345
    5097 4cug:A (2.96) BS02 MN ? GO:0016706 ... D0MK34 24814345
    5098 4cug:B (2.96) BS02 MN ? GO:0016706 ... D0MK34 24814345
    5099 4czo:A (1.199) BS03 MN N/A GO:0004601 ... N/A 25478843
    5100 4czp:A (1.898) BS03 MN N/A GO:0004601 ... N/A 25478843
    5101 4czs:A (1.73) BS03 MN ? GO:0005515 ... P81461 25860443
    5102 4czs:B (1.73) BS03 MN ? GO:0005515 ... P81461 25860443
    5103 4czs:C (1.73) BS03 MN ? GO:0005515 ... P81461 25860443
    5104 4czs:D (1.73) BS03 MN ? GO:0005515 ... P81461 25860443
    5105 4d0t:A (2.45) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5106 4d0t:B (2.45) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5107 4d0t:C (2.45) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5108 4d0t:D (2.45) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5109 4d0t:E (2.45) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5110 4d0t:F (2.45) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5111 4d0z:A (2.2) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5112 4d0z:B (2.2) BS03 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5113 4d0z:C (2.2) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5114 4d0z:D (2.2) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5115 4d0z:E (2.2) BS05 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5116 4d0z:F (2.2) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5117 4d11:A (2.85) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5118 4d11:B (2.85) BS03 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5119 4d11:C (2.85) BS02 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5120 4d11:D (2.85) BS03 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5121 4d11:E (2.85) BS03 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5122 4d11:F (2.85) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 24954443
    5123 4d69:A (2.7) BS01 MN ? GO:0030246 ... P05046 25457745
    5124 4d69:A (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5125 4d69:B (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5126 4d69:B (2.7) BS03 MN ? GO:0030246 ... P05046 25457745
    5127 4d69:C (2.7) BS01 MN ? GO:0030246 ... P05046 25457745
    5128 4d69:C (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5129 4d69:D (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5130 4d69:D (2.7) BS03 MN ? GO:0030246 ... P05046 25457745
    5131 4d69:E (2.7) BS01 MN ? GO:0030246 ... P05046 25457745
    5132 4d69:E (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5133 4d69:F (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5134 4d69:F (2.7) BS03 MN ? GO:0030246 ... P05046 25457745
    5135 4d69:G (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5136 4d69:G (2.7) BS03 MN ? GO:0030246 ... P05046 25457745
    5137 4d69:H (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5138 4d69:H (2.7) BS03 MN ? GO:0030246 ... P05046 25457745
    5139 4d69:I (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5140 4d69:I (2.7) BS03 MN ? GO:0030246 ... P05046 25457745
    5141 4d69:J (2.7) BS01 MN ? GO:0030246 ... P05046 25457745
    5142 4d69:J (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5143 4d69:K (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5144 4d69:K (2.7) BS03 MN ? GO:0030246 ... P05046 25457745
    5145 4d69:L (2.7) BS01 MN ? GO:0030246 ... P05046 25457745
    5146 4d69:L (2.7) BS02 MN ? GO:0030246 ... P05046 25457745
    5147 4d8f:A (2.2) BS02 MN 1.17.4.1 GO:0004748 ... O84835 22242660
    5148 4d8f:B (2.2) BS01 MN 1.17.4.1 GO:0004748 ... O84835 22242660
    5149 4d8f:C (2.2) BS02 MN 1.17.4.1 GO:0004748 ... O84835 22242660
    5150 4d8f:D (2.2) BS02 MN 1.17.4.1 GO:0004748 ... O84835 22242660
    5151 4d8g:A (1.75) BS01 MN 1.17.4.1 GO:0004748 ... O84835 22242660
    5152 4d8g:B (1.75) BS01 MN 1.17.4.1 GO:0004748 ... O84835 22242660
    5153 4d8g:C (1.75) BS01 MN 1.17.4.1 GO:0004748 ... O84835 22242660
    5154 4d8g:D (1.75) BS01 MN 1.17.4.1 GO:0004748 ... O84835 22242660
    5155 4db1:A (2.6) BS02 MN ? GO:0003774 ... P12883 N/A
    5156 4db1:B (2.6) BS02 MN ? GO:0003774 ... P12883 N/A
    5157 4dec:A (1.98) BS02 MN 2.4.1.266 GO:0000287 ... P9WMW9 22637481
    5158 4dky:B (2.478) BS01 MN 1.16.3.1 GO:0003677 ... A5U6Z7 24916461
    5159 4dle:A (2.44) BS05 MN 2.7.7.7 GO:0001882 ... P19821 N/A
    5160 4dm0:A (2.5) BS03 MN 3.1.-.- GO:0003677 ... Q46731 11896402
    5161 4dm0:A (2.5) BS04 MN 3.1.-.- GO:0003677 ... Q46731 11896402
    5162 4dm0:A (2.5) BS05 MN 3.1.-.- GO:0003677 ... Q46731 11896402
    5163 4dmw:A (2.5) BS01 MN 2.4.1.-
    3.4.22.-
    GO:0016757 ... P16154 22747490
    5164 4dpn:A (2.55) BS02 MN ? GO:0005515 ... P81460 N/A
    5165 4dpn:D (2.55) BS02 MN ? GO:0005515 ... P81460 N/A
    5166 4dr0:A (1.9) BS01 MN 1.17.4.1 GO:0004748 ... P50621 22443445
    5167 4dr0:A (1.9) BS02 MN 1.17.4.1 GO:0004748 ... P50621 22443445
    5168 4dr0:B (1.9) BS01 MN 1.17.4.1 GO:0004748 ... P50621 22443445
    5169 4dr0:B (1.9) BS02 MN 1.17.4.1 GO:0004748 ... P50621 22443445
    5170 4ds8:B (2.21) BS01 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 22579247
    5171 4dtl:A (2.39) BS02 MN 6.3.2.- GO:0007015 ... A0A0H3AIG7 N/A
    5172 4dtl:A (2.39) BS03 MN 6.3.2.- GO:0007015 ... A0A0H3AIG7 N/A
    5173 4dwq:A (2.25) BS02 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 22949672
    5174 4dwq:B (2.25) BS02 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 22949672
    5175 4dwr:A (1.48) BS03 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 22949672
    5176 4dwr:A (1.48) BS04 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 22949672
    5177 4dwr:B (1.48) BS03 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 22949672
    5178 4dwr:B (1.48) BS04 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 22949672
    5179 4dwr:C (1.48) BS03 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 22949672
    5180 4dwr:C (1.48) BS04 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 22949672
    5181 4dz4:A (1.7) BS01 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5182 4dz4:A (1.7) BS02 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5183 4dz4:B (1.7) BS01 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5184 4dz4:B (1.7) BS02 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5185 4dz4:C (1.7) BS01 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5186 4dz4:C (1.7) BS02 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5187 4dz4:D (1.7) BS01 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5188 4dz4:D (1.7) BS02 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5189 4dz4:E (1.7) BS01 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5190 4dz4:E (1.7) BS02 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5191 4dz4:F (1.7) BS01 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5192 4dz4:F (1.7) BS02 MN 3.5.3.11 GO:0008783 ... Q2T3W4 23382856
    5193 4e19:A (1.41) BS01 MN 3.1.26.4 GO:0003676 ... Q9HSF6 N/A
    5194 4e19:A (1.41) BS02 MN 3.1.26.4 GO:0003676 ... Q9HSF6 N/A
    5195 4e19:B (1.41) BS01 MN 3.1.26.4 GO:0003676 ... Q9HSF6 N/A
    5196 4e19:B (1.41) BS02 MN 3.1.26.4 GO:0003676 ... Q9HSF6 N/A
    5197 4e1d:A (2.49) BS02 MN 6.3.2.- GO:0007015 ... A0A0H3AIG7 N/A
    5198 4e1d:A (2.49) BS03 MN 6.3.2.- GO:0007015 ... A0A0H3AIG7 N/A
    5199 4e2q:A (2.5) BS01 MN 3.5.3.26 GO:0000256 ... Q8GXV5 22493446
    5200 4e2q:B (2.5) BS01 MN 3.5.3.26 GO:0000256 ... Q8GXV5 22493446

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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