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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4801 3vyl:B (2.7) BS01 MN 5.3.1.- GO:0046872 ... N0DP12 24311575
    4802 3vyl:C (2.7) BS01 MN 5.3.1.- GO:0046872 ... N0DP12 24311575
    4803 3vyl:D (2.7) BS01 MN 5.3.1.- GO:0046872 ... N0DP12 24311575
    4804 3vyl:E (2.7) BS01 MN 5.3.1.- GO:0046872 ... N0DP12 24311575
    4805 3vyl:F (2.7) BS01 MN 5.3.1.- GO:0046872 ... N0DP12 24311575
    4806 3vyl:G (2.7) BS01 MN 5.3.1.- GO:0046872 ... N0DP12 24311575
    4807 3vyl:H (2.7) BS01 MN 5.3.1.- GO:0046872 ... N0DP12 24311575
    4808 3w42:A (1.06) BS01 MN 3.1.3.3 GO:0004721 ... P17906 26057679
    4809 3w42:B (1.06) BS01 MN 3.1.3.3 GO:0004721 ... P17906 26057679
    4810 3w43:A (1.22) BS01 MN 3.1.3.3 GO:0004721 ... P17906 26057679
    4811 3w43:A (1.22) BS02 MN 3.1.3.3 GO:0004721 ... P17906 26057679
    4812 3w44:A (2.3) BS01 MN 3.1.3.3 GO:0004721 ... P17906 26057679
    4813 3w44:A (2.3) BS02 MN 3.1.3.3 GO:0004721 ... P17906 26057679
    4814 3w44:B (2.3) BS01 MN 3.1.3.3 GO:0004721 ... P17906 26057679
    4815 3w44:B (2.3) BS02 MN 3.1.3.3 GO:0004721 ... P17906 26057679
    4816 3w5w:A (2.95) BS02 MN ? GO:0046872 ... Q64PD9 23851074
    4817 3w5w:A (2.95) BS03 MN ? GO:0046872 ... Q64PD9 23851074
    4818 3wak:A (3.413) BS01 MN 2.4.99.21 GO:0004576 ... O29867 24127570
    4819 3wcs:A (1.75) BS02 MN ? GO:0005537 ... P05088 24436051
    4820 3wcs:B (1.75) BS02 MN ? GO:0005537 ... P05088 24436051
    4821 3wei:A (1.79) BS01 MN 2.5.1.21 GO:0004310 ... P37268 24531458
    4822 3wei:A (1.79) BS02 MN 2.5.1.21 GO:0004310 ... P37268 24531458
    4823 3wei:A (1.79) BS03 MN 2.5.1.21 GO:0004310 ... P37268 24531458
    4824 3wog:A (2.0) BS02 MN ? GO:0005537 ... P05088 24436051
    4825 3wog:B (2.0) BS02 MN ? GO:0005537 ... P05088 24436051
    4826 3wqo:A (2.64) BS01 MN ? GO:0003677 ... Q58707 25005083
    4827 3wqo:A (2.64) BS02 MN ? GO:0003677 ... Q58707 25005083
    4828 3wqo:B (2.64) BS01 MN ? GO:0003677 ... Q58707 25005083
    4829 3wqo:B (2.64) BS02 MN ? GO:0003677 ... Q58707 25005083
    4830 3wro:A (1.48) BS01 MN 3.1.21.-
    3.6.4.12
    N/A P03134 25528417
    4831 3wvh:A (2.54) BS03 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4832 3wvh:B (2.54) BS03 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4833 3wvh:C (2.54) BS03 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4834 3wvh:D (2.54) BS03 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4835 3wvi:A (2.55) BS03 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4836 3wvi:B (2.55) BS03 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4837 3wvi:C (2.55) BS03 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4838 3wvi:D (2.55) BS03 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4839 3wvk:A (2.0) BS05 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4840 3wvk:A (2.0) BS06 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4841 3wvk:B (2.0) BS05 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4842 3wvk:B (2.0) BS06 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4843 3wvk:C (2.0) BS05 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4844 3wvk:C (2.0) BS06 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4845 3wvk:D (2.0) BS06 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4846 3wvk:D (2.0) BS07 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4847 3wvp:A (2.3) BS07 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4848 3wvp:B (2.3) BS07 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4849 3wvp:C (2.3) BS07 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4850 3wvp:D (2.3) BS07 MN 3.1.21.4 GO:0004519 ... P43870 25664735
    4851 3ww1:A (1.95) BS01 MN ? GO:0016853 ... L0N3Y0 25661811
    4852 3ww1:B (1.95) BS01 MN ? GO:0016853 ... L0N3Y0 25661811
    4853 3ww2:A (2.0) BS01 MN ? GO:0016853 ... L0N3Y0 25661811
    4854 3ww2:B (2.0) BS01 MN ? GO:0016853 ... L0N3Y0 25661811
    4855 3ww3:A (1.9) BS01 MN ? GO:0016853 ... L0N3Y0 25661811
    4856 3ww3:B (1.9) BS01 MN ? GO:0016853 ... L0N3Y0 25661811
    4857 3ww4:A (1.95) BS01 MN ? GO:0016853 ... L0N3Y0 25661811
    4858 3ww4:B (1.95) BS01 MN ? GO:0016853 ... L0N3Y0 25661811
    4859 3wzh:B (3.31) BS01 MN ? N/A O28415 26106927
    4860 3x0m:A (1.15) BS02 MN 3.6.1.13 GO:0005829 ... Q5SKW5 26979298
    4861 3x0n:A (1.12) BS02 MN 3.6.1.13 GO:0005829 ... Q5SKW5 26979298
    4862 3x0o:A (1.09) BS02 MN 3.6.1.13 GO:0005829 ... Q5SKW5 26979298
    4863 3x0o:A (1.09) BS03 MN 3.6.1.13 GO:0005829 ... Q5SKW5 26979298
    4864 3x0p:A (1.22) BS02 MN 3.6.1.13 GO:0005829 ... Q5SKW5 26979298
    4865 3x0p:A (1.22) BS03 MN 3.6.1.13 GO:0005829 ... Q5SKW5 26979298
    4866 3x0q:A (1.14) BS02 MN 3.6.1.13 GO:0005829 ... Q5SKW5 26979298
    4867 3x0q:A (1.14) BS03 MN 3.6.1.13 GO:0005829 ... Q5SKW5 26979298
    4868 3x0q:A (1.14) BS04 MN 3.6.1.13 GO:0005829 ... Q5SKW5 26979298
    4869 3x0r:A (1.15) BS01 MN 3.6.1.13 GO:0005829 ... Q5SKW5 26979298
    4870 3x1s:G (2.805) BS03 MN ? GO:0000786 ... P04908 26188507
    4871 3x1t:D (2.808) BS03 MN ? GO:0000786 ... P70696 26188507
    4872 3x1t:G (2.808) BS03 MN ? GO:0000786 ... Q8CGP4 26188507
    4873 3x1u:G (3.25) BS03 MN ? GO:0000786 ... Q8CGP4 26188507
    4874 3x1u:H (3.25) BS03 MN ? GO:0000781 ... P33778 26188507
    4875 3x1v:G (2.921) BS03 MN ? GO:0000786 ... P04908 26188507
    4876 3x2x:A (3.42) BS01 MN ? GO:0016787 ... Q9X0P5 N/A
    4877 3x2x:B (3.42) BS01 MN ? GO:0016787 ... Q9X0P5 N/A
    4878 3x30:A (1.921) BS01 MN ? GO:0016787 ... Q9X0P5 N/A
    4879 3zdx:B (2.45) BS01 MN ? N/A P05106 23798730
    4880 3zdx:B (2.45) BS02 MN ? N/A P05106 23798730
    4881 3zdx:B (2.45) BS03 MN ? N/A P05106 23798730
    4882 3zdx:D (2.45) BS01 MN ? N/A P05106 23798730
    4883 3zdx:D (2.45) BS02 MN ? N/A P05106 23798730
    4884 3zdx:D (2.45) BS03 MN ? N/A P05106 23798730
    4885 3zdz:B (2.75) BS02 MN ? N/A P05106 23798730
    4886 3zdz:B (2.75) BS03 MN ? N/A P05106 23798730
    4887 3zdz:B (2.75) BS04 MN ? N/A P05106 23798730
    4888 3zdz:D (2.75) BS02 MN ? N/A P05106 23798730
    4889 3zdz:D (2.75) BS03 MN ? N/A P05106 23798730
    4890 3zdz:D (2.75) BS04 MN ? N/A P05106 23798730
    4891 3ze0:B (2.95) BS02 MN ? N/A P05106 23798730
    4892 3ze0:B (2.95) BS03 MN ? N/A P05106 23798730
    4893 3ze0:B (2.95) BS04 MN ? N/A P05106 23798730
    4894 3ze0:D (2.95) BS02 MN ? N/A P05106 23798730
    4895 3ze0:D (2.95) BS03 MN ? N/A P05106 23798730
    4896 3ze0:D (2.95) BS04 MN ? N/A P05106 23798730
    4897 3ze1:B (3.0) BS02 MN ? N/A P05106 23798730
    4898 3ze1:B (3.0) BS03 MN ? N/A P05106 23798730
    4899 3ze1:B (3.0) BS04 MN ? N/A P05106 23798730
    4900 3ze1:D (3.0) BS02 MN ? N/A P05106 23798730
    4901 3ze1:D (3.0) BS03 MN ? N/A P05106 23798730
    4902 3ze1:D (3.0) BS04 MN ? N/A P05106 23798730
    4903 3ze2:B (2.35) BS02 MN ? N/A P05106 23798730
    4904 3ze2:B (2.35) BS03 MN ? N/A P05106 23798730
    4905 3ze2:B (2.35) BS04 MN ? N/A P05106 23798730
    4906 3ze2:D (2.35) BS02 MN ? N/A P05106 23798730
    4907 3ze2:D (2.35) BS03 MN ? N/A P05106 23798730
    4908 3ze2:D (2.35) BS04 MN ? N/A P05106 23798730
    4909 3zf8:A (1.98) BS02 MN ? N/A P39107 24026536
    4910 3zgf:A (1.701) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 25084373
    4911 3zgf:B (1.701) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 25084373
    4912 3zgg:A (1.9) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 25084373
    4913 3zhx:A (2.0) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 23819803
    4914 3zhx:B (2.0) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 23819803
    4915 3zhy:A (2.3) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 23819803
    4916 3zhy:B (2.3) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 23819803
    4917 3zi0:B (1.9) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 23819803
    4918 3zk4:A (1.65) BS02 MN 3.1.3.2 GO:0003993 ... Q8VX11 25075326
    4919 3zk4:B (1.65) BS02 MN 3.1.3.2 GO:0003993 ... Q8VX11 25075326
    4920 3zk4:C (1.65) BS02 MN 3.1.3.2 GO:0003993 ... Q8VX11 25075326
    4921 3zka:A (1.55) BS01 MN ? GO:0005886 ... P0A4G2 24212134
    4922 3zka:B (1.55) BS01 MN ? GO:0005886 ... P0A4G2 24212134
    4923 3zt9:A (1.75) BS01 MN 3.1.3.16 GO:0046872 ... Q2RIF7 22325782
    4924 3zt9:A (1.75) BS02 MN 3.1.3.16 GO:0046872 ... Q2RIF7 22325782
    4925 3zt9:A (1.75) BS03 MN 3.1.3.16 GO:0046872 ... Q2RIF7 22325782
    4926 3ztt:A (2.7) BS01 MN ? GO:0007155 ... P0A4G2 22072971
    4927 3ztt:B (2.7) BS01 MN ? GO:0007155 ... P0A4G2 22072971
    4928 3ztt:C (2.7) BS01 MN ? GO:0007155 ... P0A4G2 22072971
    4929 3ztt:D (2.7) BS01 MN ? GO:0007155 ... P0A4G2 22072971
    4930 3zvu:B (2.1) BS01 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 21847091
    4931 3zvu:B (2.1) BS02 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 21847091
    4932 3zvx:A (2.1) BS03 MN ? GO:0030246 ... G1EUI6 22692206
    4933 3zvx:B (2.1) BS01 MN ? GO:0030246 ... G1EUI6 22692206
    4934 3zyr:A (1.65) BS03 MN ? GO:0030246 ... G1EUI6 22692206
    4935 3zyr:B (1.65) BS03 MN ? GO:0030246 ... G1EUI6 22692206
    4936 4a03:A (1.65) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 22281742
    4937 4a03:B (1.65) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 22281742
    4938 4a25:A (2.0) BS01 MN ? GO:0008199 ... A6WG04 23396000
    4939 4a25:A (2.0) BS02 MN ? GO:0008199 ... A6WG04 23396000
    4940 4a25:A (2.0) BS03 MN ? GO:0008199 ... A6WG04 23396000
    4941 4a25:A (2.0) BS04 MN ? GO:0008199 ... A6WG04 23396000
    4942 4a25:B (2.0) BS01 MN ? GO:0008199 ... A6WG04 23396000
    4943 4a25:B (2.0) BS02 MN ? GO:0008199 ... A6WG04 23396000
    4944 4a25:C (2.0) BS01 MN ? GO:0008199 ... A6WG04 23396000
    4945 4a25:C (2.0) BS02 MN ? GO:0008199 ... A6WG04 23396000
    4946 4a25:D (2.0) BS01 MN ? GO:0008199 ... A6WG04 23396000
    4947 4a6v:A (1.46) BS01 MN N/A GO:0006508 ... N/A 22489069
    4948 4a6v:A (1.46) BS04 MN N/A GO:0006508 ... N/A 22489069
    4949 4a6v:B (1.46) BS02 MN N/A GO:0006508 ... N/A 22489069
    4950 4a6v:B (1.46) BS03 MN N/A GO:0006508 ... N/A 22489069
    4951 4a6w:A (1.46) BS01 MN N/A GO:0006508 ... N/A 22489069
    4952 4a6w:A (1.46) BS03 MN N/A GO:0006508 ... N/A 22489069
    4953 4a8o:A (2.67) BS01 MN 2.7.7.48 GO:0000166 ... P11124 22205747
    4954 4a8o:B (2.67) BS01 MN 2.7.7.48 GO:0000166 ... P11124 22205747
    4955 4a8o:C (2.67) BS01 MN 2.7.7.48 GO:0000166 ... P11124 22205747
    4956 4ac8:A (2.75) BS02 MN 1.-.-.- GO:0005506 ... P9WH69 22976985
    4957 4ac8:B (2.75) BS02 MN 1.-.-.- GO:0005506 ... P9WH69 22976985
    4958 4ac8:C (2.75) BS02 MN 1.-.-.- GO:0005506 ... P9WH69 22976985
    4959 4ac8:D (2.75) BS02 MN 1.-.-.- GO:0005506 ... P9WH69 22976985
    4960 4aic:A (2.05) BS03 MN 1.1.1.267 GO:0000287 ... P9WNS1 17491006
    4961 4aic:B (2.05) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 17491006
    4962 4amq:A (2.17) BS01 MN ? GO:0044423 ... Q5UQA5 N/A
    4963 4amq:A (2.17) BS02 MN ? GO:0044423 ... Q5UQA5 N/A
    4964 4avg:A (2.2) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4965 4avg:A (2.2) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4966 4avg:B (2.2) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4967 4avg:B (2.2) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4968 4avg:C (2.2) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4969 4avg:C (2.2) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4970 4avg:D (2.2) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4971 4avg:D (2.2) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4972 4avl:A (1.87) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4973 4avl:A (1.87) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4974 4avl:B (1.87) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4975 4avl:B (1.87) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4976 4avl:C (1.87) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4977 4avl:C (1.87) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4978 4avl:D (1.87) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4979 4avl:D (1.87) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4980 4avq:A (2.1) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4981 4avq:B (2.1) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4982 4avq:C (2.1) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4983 4avq:D (2.1) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4984 4awf:A (2.3) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4985 4awf:A (2.3) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4986 4awf:B (2.3) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4987 4awf:B (2.3) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4988 4awf:C (2.3) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4989 4awf:C (2.3) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4990 4awf:D (2.3) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4991 4awf:D (2.3) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4992 4awg:A (2.6) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4993 4awg:A (2.6) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4994 4awg:B (2.6) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4995 4awg:B (2.6) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4996 4awg:C (2.6) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4997 4awg:C (2.6) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4998 4awg:D (2.6) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    4999 4awg:D (2.6) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177
    5000 4awh:A (2.05) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 22876177

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218