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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 3tht:A (3.01) BS02 MN 2.1.1.229 GO:0003676 ... Q96BT7 22065580
    4602 3tht:B (3.01) BS02 MN 2.1.1.229 GO:0003676 ... Q96BT7 22065580
    4603 3tht:C (3.01) BS02 MN 2.1.1.229 GO:0003676 ... Q96BT7 22065580
    4604 3tht:D (3.01) BS02 MN 2.1.1.229 GO:0003676 ... Q96BT7 22065580
    4605 3tmy:A (2.2) BS01 MN ? GO:0000160 ... Q56312 9521117
    4606 3tmy:B (2.2) BS01 MN ? GO:0000160 ... Q56312 9521117
    4607 3tqk:A (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q5NG89 23704901
    4608 3tr4:A (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    4609 3tr4:B (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    4610 3tr4:C (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    4611 3tr4:D (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    4612 3tr4:E (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    4613 3tr4:F (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    4614 3tr8:A (2.503) BS01 MN 3.1.15.- GO:0000175 ... Q83C93 26033498
    4615 3tr8:B (2.503) BS01 MN 3.1.15.- GO:0000175 ... Q83C93 26033498
    4616 3twz:A (1.75) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4617 3twz:A (1.75) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4618 3tx0:A (2.26) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4619 3tx0:A (2.26) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4620 3u0y:A (1.6) BS03 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 N/A
    4621 3u0y:B (1.6) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 N/A
    4622 3u2t:A (2.05) BS01 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    4623 3u2u:A (1.45) BS05 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    4624 3u2u:B (1.45) BS04 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    4625 3u2v:A (1.5) BS06 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    4626 3u2v:B (1.5) BS05 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    4627 3u2w:A (1.68) BS01 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    4628 3u2w:B (1.68) BS01 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    4629 3u2x:A (1.77) BS01 MN 2.4.1.186 GO:0016757 ... P46976 N/A
    4630 3u2x:B (1.77) BS01 MN 2.4.1.186 GO:0016757 ... P46976 N/A
    4631 3u4x:A (2.16) BS02 MN ? GO:0005509 ... J9PBR3 22554687
    4632 3u6w:A (2.21) BS01 MN 2.3.3.13 GO:0003824 ... P9WQB3 22352945
    4633 3u6w:B (2.21) BS01 MN 2.3.3.13 GO:0003824 ... P9WQB3 22352945
    4634 3u95:A (1.998) BS01 MN ? GO:0003824 ... B9KAM3 22093829
    4635 3u95:B (1.998) BS01 MN ? GO:0003824 ... B9KAM3 22093829
    4636 3u95:C (1.998) BS01 MN ? GO:0003824 ... B9KAM3 22093829
    4637 3u95:D (1.998) BS01 MN ? GO:0003824 ... B9KAM3 22093829
    4638 3u95:E (1.998) BS01 MN ? GO:0003824 ... B9KAM3 22093829
    4639 3u95:F (1.998) BS01 MN ? GO:0003824 ... B9KAM3 22093829
    4640 3uct:A (1.9) BS01 MN ? GO:0005509 ... P0DP23 22803592
    4641 3uct:A (1.9) BS02 MN ? GO:0005509 ... P0DP23 22803592
    4642 3uct:A (1.9) BS03 MN ? GO:0005509 ... P0DP23 22803592
    4643 3uct:A (1.9) BS04 MN ? GO:0005509 ... P0DP23 22803592
    4644 3uct:B (1.9) BS01 MN ? GO:0005509 ... P0DP23 22803592
    4645 3uct:B (1.9) BS02 MN ? GO:0005509 ... P0DP23 22803592
    4646 3ufx:B (2.35) BS02 MN 6.2.1.4 GO:0000287 ... P25126 22751660
    4647 3ufx:E (2.35) BS02 MN 6.2.1.4 GO:0000287 ... P25126 22751660
    4648 3ufx:G (2.35) BS02 MN 6.2.1.4 GO:0000287 ... P25126 22751660
    4649 3ufx:I (2.35) BS02 MN 6.2.1.4 GO:0000287 ... P25126 22751660
    4650 3ujo:A (2.0) BS03 MN ? GO:0030246 ... B3EWQ9 23794513
    4651 3ujo:B (2.0) BS03 MN ? GO:0030246 ... B3EWQ9 23794513
    4652 3ujo:C (2.0) BS03 MN ? GO:0030246 ... B3EWQ9 23794513
    4653 3ujo:D (2.0) BS04 MN ? GO:0030246 ... B3EWQ9 23794513
    4654 3ujp:A (2.7) BS01 MN ? GO:0007155 ... Q79EF9 23519795
    4655 3ujp:B (2.7) BS01 MN ? GO:0007155 ... Q79EF9 23519795
    4656 3ujp:C (2.7) BS01 MN ? GO:0007155 ... Q79EF9 23519795
    4657 3ujq:A (2.06) BS03 MN ? GO:0030246 ... B3EWQ9 23794513
    4658 3ujq:B (2.06) BS03 MN ? GO:0030246 ... B3EWQ9 23794513
    4659 3ujq:C (2.06) BS03 MN ? GO:0030246 ... B3EWQ9 23794513
    4660 3ujq:D (2.06) BS03 MN ? GO:0030246 ... B3EWQ9 23794513
    4661 3uk9:A (3.11) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4662 3uk9:B (3.11) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4663 3uk9:C (3.11) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4664 3uk9:D (3.11) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4665 3uk9:E (3.11) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4666 3uk9:F (3.11) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4667 3uk9:G (3.11) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4668 3uk9:H (3.11) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4669 3ul2:A (2.5) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4670 3ul2:B (2.5) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4671 3ul2:C (2.5) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4672 3ul2:D (2.5) BS02 MN ? GO:0030246 ... B3EWQ9 23794513
    4673 3ulq:A (2.3) BS01 MN 3.1.-.- GO:0005515 ... P71002 22215984
    4674 3un2:A (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4675 3un2:A (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4676 3un2:A (1.8) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4677 3un2:B (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4678 3un2:B (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4679 3un2:C (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4680 3un2:C (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4681 3un2:C (1.8) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4682 3un3:A (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4683 3un3:A (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4684 3un3:A (1.8) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4685 3un3:B (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4686 3un3:B (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4687 3un3:C (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4688 3un3:C (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4689 3un3:C (1.8) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4690 3un5:A (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4691 3un5:A (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4692 3un5:A (1.8) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4693 3un5:A (1.8) BS04 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4694 3un5:B (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4695 3un5:B (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4696 3un5:B (1.8) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4697 3un5:C (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4698 3un5:C (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4699 3un5:D (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4700 3un5:D (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4701 3un5:E (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4702 3un5:E (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4703 3un5:E (1.8) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4704 3un5:F (1.8) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4705 3un5:F (1.8) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4706 3uny:A (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4707 3uny:A (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4708 3uny:A (1.95) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4709 3uny:B (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4710 3uny:B (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4711 3uny:B (1.95) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4712 3uny:C (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4713 3uny:C (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4714 3uny:D (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4715 3uny:D (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4716 3uny:E (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4717 3uny:E (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4718 3uny:E (1.95) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4719 3uny:F (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4720 3uny:F (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4721 3uo0:A (2.3) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4722 3uo0:A (2.3) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4723 3uo0:A (2.3) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4724 3uo0:B (2.3) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4725 3uo0:B (2.3) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4726 3uo0:C (2.3) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4727 3uo0:C (2.3) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4728 3uo0:C (2.3) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    4729 3upq:A (1.95) BS05 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 22584622
    4730 3upq:A (1.95) BS06 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 22584622
    4731 3upq:A (1.95) BS07 MN 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 22584622
    4732 3usu:A (2.46) BS02 MN ? GO:0030246 ... H2L2M6 N/A
    4733 3usu:B (2.46) BS02 MN ? GO:0030246 ... H2L2M6 N/A
    4734 3usu:C (2.46) BS02 MN ? GO:0030246 ... H2L2M6 N/A
    4735 3usu:D (2.46) BS02 MN ? GO:0030246 ... H2L2M6 N/A
    4736 3usu:E (2.46) BS02 MN ? GO:0030246 ... H2L2M6 N/A
    4737 3usu:F (2.46) BS02 MN ? GO:0030246 ... H2L2M6 N/A
    4738 3usu:G (2.46) BS02 MN ? GO:0030246 ... H2L2M6 N/A
    4739 3usu:H (2.46) BS04 MN ? GO:0030246 ... H2L2M6 N/A
    4740 3uu0:A (2.7) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4741 3uu0:A (2.7) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4742 3uu0:B (2.7) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4743 3uu0:B (2.7) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4744 3uu0:C (2.7) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4745 3uu0:C (2.7) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4746 3uu0:D (2.7) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4747 3uu0:D (2.7) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4748 3uva:A (2.69) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4749 3uva:A (2.69) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4750 3uva:B (2.69) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4751 3uva:B (2.69) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4752 3uva:C (2.69) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4753 3uva:C (2.69) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4754 3uva:D (2.69) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4755 3uva:D (2.69) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4756 3uxi:A (2.73) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    4757 3v0l:A (1.75) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4758 3v0m:A (1.68) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4759 3v0m:B (1.68) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4760 3v0n:A (1.75) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4761 3v0n:B (1.75) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4762 3v0o:A (1.65) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4763 3v0o:B (1.65) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4764 3v0p:A (1.9) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4765 3v0p:B (1.9) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4766 3v0q:A (1.8) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4767 3v0q:B (1.8) BS01 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 23836908
    4768 3v1r:A (2.8) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... Q2F7J3 22366278
    4769 3v1r:A (2.8) BS02 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... Q2F7J3 22366278
    4770 3v4y:A (2.098) BS01 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    4771 3v4y:A (2.098) BS02 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    4772 3v4y:C (2.098) BS01 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    4773 3v4y:C (2.098) BS02 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    4774 3v4y:E (2.098) BS01 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    4775 3v4y:E (2.098) BS02 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    4776 3v4y:G (2.098) BS01 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    4777 3v4y:G (2.098) BS02 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    4778 3v8z:A (2.2) BS01 MN 2.4.1.186 GO:0016757 ... P13280 22226635
    4779 3v91:A (2.0) BS01 MN 2.4.1.186 GO:0016757 ... P13280 22226635
    4780 3vni:A (1.98) BS01 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4781 3vni:B (1.98) BS01 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4782 3vni:C (1.98) BS01 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4783 3vni:D (1.98) BS01 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4784 3vnj:A (2.08) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4785 3vnj:B (2.08) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4786 3vnj:C (2.08) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4787 3vnj:D (2.08) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4788 3vnk:A (2.02) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4789 3vnk:B (2.02) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4790 3vnk:C (2.02) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4791 3vnk:D (2.02) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4792 3vnl:A (2.15) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4793 3vnl:B (2.15) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4794 3vnl:C (2.15) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4795 3vnl:D (2.15) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4796 3vnm:A (2.12) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4797 3vnm:B (2.12) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4798 3vnm:C (2.12) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4799 3vnm:D (2.12) BS02 MN 5.1.3.30 GO:0016853 ... B8I944 22426981
    4800 3vyl:A (2.7) BS01 MN 5.3.1.- GO:0046872 ... N0DP12 24311575

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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