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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1ce8:E (2.1) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    202 1ce8:G (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    203 1ce8:G (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    204 1ce8:G (2.1) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    205 1cev:A (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    206 1cev:A (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    207 1cev:B (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    208 1cev:B (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    209 1cev:C (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    210 1cev:C (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    211 1cev:D (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    212 1cev:D (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    213 1cev:E (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    214 1cev:E (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    215 1cev:F (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    216 1cev:F (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    217 1ciw:A (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    218 1ciw:B (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    219 1ciw:C (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    220 1ciw:D (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    221 1cjk:A (3.0) BS02 MN 4.6.1.1 GO:0009190 ... P30803 10427002
    222 1cjp:A (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    223 1cjp:B (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    224 1cjp:C (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    225 1cjp:D (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    226 1cjt:A (2.8) BS02 MN 4.6.1.1 GO:0009190 ... P30803 10427002
    227 1cnz:A (1.76) BS01 MN 1.1.1.85 GO:0000287 ... P37412 9086278
    228 1cnz:B (1.76) BS01 MN 1.1.1.85 GO:0000287 ... P37412 9086278
    229 1cpo:A (1.9) BS08 MN 1.11.1.10 GO:0004601 ... P04963 8747463
    230 1cq9:A (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    231 1cq9:B (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    232 1cq9:C (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    233 1cq9:D (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    234 1cr7:A (2.6) BS04 MN ? GO:0030246 ... P02872 11288176
    235 1cr7:B (2.6) BS04 MN ? GO:0030246 ... P02872 11288176
    236 1cr7:C (2.6) BS02 MN ? GO:0030246 ... P02872 11288176
    237 1cr7:D (2.6) BS02 MN ? GO:0030246 ... P02872 11288176
    238 1cr7:E (2.6) BS04 MN ? GO:0030246 ... P02872 11288176
    239 1cr7:F (2.6) BS02 MN ? GO:0030246 ... P02872 11288176
    240 1cr7:G (2.6) BS02 MN ? GO:0030246 ... P02872 11288176
    241 1cr7:H (2.6) BS02 MN ? GO:0030246 ... P02872 11288176
    242 1cs0:A (2.0) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    243 1cs0:A (2.0) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    244 1cs0:A (2.0) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    245 1cs0:C (2.0) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    246 1cs0:C (2.0) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    247 1cs0:C (2.0) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    248 1cs0:E (2.0) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    249 1cs0:E (2.0) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    250 1cs0:E (2.0) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    251 1cs0:G (2.0) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    252 1cs0:G (2.0) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    253 1cs0:G (2.0) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10587438
    254 1cvn:A (2.3) BS03 MN ? GO:0030246 ... P02866 8557713
    255 1cvn:B (2.3) BS04 MN ? GO:0030246 ... P02866 8557713
    256 1cvn:C (2.3) BS04 MN ? GO:0030246 ... P02866 8557713
    257 1cvn:D (2.3) BS03 MN ? GO:0030246 ... P02866 8557713
    258 1cw4:A (2.1) BS01 MN 1.1.1.42 GO:0000287 ... P08200 10623532
    259 1d3v:A (1.7) BS01 MN 3.5.3.1 GO:0000050 ... P07824 10542097
    260 1d3v:A (1.7) BS02 MN 3.5.3.1 GO:0000050 ... P07824 10542097
    261 1d3v:B (1.7) BS01 MN 3.5.3.1 GO:0000050 ... P07824 10542097
    262 1d3v:B (1.7) BS02 MN 3.5.3.1 GO:0000050 ... P07824 10542097
    263 1d5n:A (1.55) BS01 MN 1.15.1.1 GO:0003677 ... P00448 10686094
    264 1d5n:B (1.55) BS01 MN 1.15.1.1 GO:0003677 ... P00448 10686094
    265 1d5n:C (1.55) BS01 MN 1.15.1.1 GO:0003677 ... P00448 10686094
    266 1d5n:D (1.55) BS01 MN 1.15.1.1 GO:0003677 ... P00448 10686094
    267 1d8h:A (2.0) BS01 MN 3.6.1.74 GO:0004651 ... O13297 10589681
    268 1d8h:B (2.0) BS01 MN 3.6.1.74 GO:0004651 ... O13297 10589681
    269 1d8h:C (2.0) BS01 MN 3.6.1.74 GO:0004651 ... O13297 10589681
    270 1dah:A (1.64) BS01 MN 6.3.3.3 GO:0000287 ... P13000 7669756
    271 1dbn:A (2.75) BS05 MN ? GO:0030246 ... P93248 10747930
    272 1dbn:B (2.75) BS05 MN ? GO:0030246 ... P93248 10747930
    273 1dck:A (2.0) BS01 MN ? GO:0000160 ... P10958 10647182
    274 1dck:B (2.0) BS01 MN ? GO:0000160 ... P10958 10647182
    275 1de6:A (2.1) BS03 MN 5.3.1.14 GO:0005737 ... P32170 10891278
    276 1de6:B (2.1) BS03 MN 5.3.1.14 GO:0005737 ... P32170 10891278
    277 1de6:C (2.1) BS03 MN 5.3.1.14 GO:0005737 ... P32170 10891278
    278 1de6:D (2.1) BS03 MN 5.3.1.14 GO:0005737 ... P32170 10891278
    279 1de9:A (3.0) BS04 MN 3.1.11.2
    3.1.21.-    		 GO:0003677 ... P27695 10667800
    280 1dgl:A (2.4) BS04 MN ? GO:0005537 ... P08902 9830028
    281 1dgl:B (2.4) BS05 MN ? GO:0005537 ... P08902 9830028
    282 1did:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2304904
    283 1did:A (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2304904
    284 1did:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2304904
    285 1did:B (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2304904
    286 1do8:A (2.2) BS02 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    287 1do8:B (2.2) BS02 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    288 1do8:C (2.2) BS02 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    289 1do8:D (2.2) BS03 MN 1.1.1.38 GO:0004470 ... P23368 10700286
    290 1dq4:A (2.9) BS01 MN ? GO:0005537 ... P55915 10748006
    291 1dq4:A (2.9) BS02 MN ? GO:0005537 ... P55915 10748006
    292 1dq4:B (2.9) BS01 MN ? GO:0005537 ... P55915 10748006
    293 1dq4:B (2.9) BS02 MN ? GO:0005537 ... P55915 10748006
    294 1dq5:A (2.0) BS01 MN ? GO:0005537 ... P55915 10748006
    295 1dq5:A (2.0) BS02 MN ? GO:0005537 ... P55915 10748006
    296 1dq6:A (1.9) BS01 MN ? GO:0030246 ... P02866 10748006
    297 1dq6:A (1.9) BS02 MN ? GO:0030246 ... P02866 10748006
    298 1dzq:A (2.85) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    299 1dzq:B (2.85) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    300 1dzq:C (2.85) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    301 1dzq:D (2.85) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    302 1e24:A (2.35) BS03 MN 6.1.1.6 GO:0000049 ... P0A8N5 10913247
    303 1e6a:A (1.9) BS01 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    304 1e6a:A (1.9) BS02 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    305 1e6a:B (1.9) BS01 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    306 1e6a:B (1.9) BS02 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    307 1e9g:A (1.15) BS01 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    308 1e9g:A (1.15) BS02 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    309 1e9g:B (1.15) BS01 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    310 1e9g:B (1.15) BS02 MN 3.6.1.1 GO:0000287 ... P00817 11248042
    311 1ecc:B (2.4) BS01 MN 2.4.2.14 GO:0000287 ... P0AG16 9333323
    312 1ef2:A (2.5) BS01 MN 3.5.1.5 GO:0005515 ... P18314 10555581
    313 1ef2:A (2.5) BS02 MN 3.5.1.5 GO:0005515 ... P18314 10555581
    314 1ejj:A (1.9) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 10747010
    315 1ejj:A (1.9) BS02 MN 5.4.2.12 GO:0003824 ... Q9X519 10747010
    316 1els:A (2.4) BS01 MN 4.2.1.11 GO:0000015 ... P00924 8193144
    317 1els:A (2.4) BS02 MN 4.2.1.11 GO:0000015 ... P00924 8193144
    318 1em1:A (2.13) BS01 MN 1.15.1.1 GO:0004784 ... P04179 10852710
    319 1em1:B (2.13) BS01 MN 1.15.1.1 GO:0004784 ... P04179 10852710
    320 1en4:A (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    321 1en4:B (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    322 1en4:C (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    323 1en4:D (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    324 1en5:A (2.3) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    325 1en5:B (2.3) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    326 1en5:C (2.3) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    327 1en5:D (2.3) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    328 1en6:A (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    329 1en6:B (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    330 1en6:C (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    331 1en6:D (2.0) BS01 MN 1.15.1.1 GO:0003677 ... P00448 11141052
    332 1eo4:A (1.9) BS03 MN 3.1.21.4 GO:0003677 ... P04390 N/A
    333 1eo4:A (1.9) BS04 MN 3.1.21.4 GO:0003677 ... P04390 N/A
    334 1eo4:A (1.9) BS05 MN 3.1.21.4 GO:0003677 ... P04390 N/A
    335 1eqj:A (1.7) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 10764795
    336 1eqj:A (1.7) BS02 MN 5.4.2.12 GO:0003824 ... Q9X519 10764795
    337 1f1h:A (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    338 1f1h:A (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    339 1f1h:B (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    340 1f1h:B (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    341 1f1h:C (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    342 1f1h:C (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    343 1f1h:D (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    344 1f1h:D (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    345 1f1h:E (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    346 1f1h:E (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    347 1f1h:F (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    348 1f1h:F (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    349 1f1h:G (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    350 1f1h:G (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    351 1f1h:H (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    352 1f1h:H (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    353 1f1h:I (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    354 1f1h:I (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    355 1f1h:J (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    356 1f1h:J (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    357 1f1h:K (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    358 1f1h:K (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    359 1f1h:L (2.67) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    360 1f1h:L (2.67) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    361 1f1r:A (1.8) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    362 1f1r:B (1.8) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    363 1f1u:A (1.5) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    364 1f1u:B (1.5) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    365 1f1v:A (1.9) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    366 1f1v:B (1.9) BS01 MN 1.13.11.15 GO:0003824 ... Q44048 15028678
    367 1f3w:A (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    368 1f3w:B (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    369 1f3w:C (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    370 1f3w:D (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    371 1f3w:E (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    372 1f3w:F (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    373 1f3w:G (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    374 1f3w:H (3.0) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    375 1f3x:A (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    376 1f3x:B (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    377 1f3x:C (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    378 1f3x:D (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    379 1f3x:E (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    380 1f3x:F (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    381 1f3x:G (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    382 1f3x:H (2.8) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 11563914
    383 1f52:A (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    384 1f52:A (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    385 1f52:B (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    386 1f52:B (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    387 1f52:C (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    388 1f52:C (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    389 1f52:D (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    390 1f52:D (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    391 1f52:E (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    392 1f52:E (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    393 1f52:F (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    394 1f52:F (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    395 1f52:G (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    396 1f52:G (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    397 1f52:H (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    398 1f52:H (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    399 1f52:I (2.49) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    400 1f52:I (2.49) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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