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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3601 3dy8:A (2.15) BS01 MN 3.1.4.35 GO:0004114 ... O76083 18757755
    3602 3dy8:B (2.15) BS01 MN 3.1.4.35 GO:0004114 ... O76083 18757755
    3603 3dyl:A (2.7) BS01 MN 3.1.4.35 GO:0004114 ... O76083 18757755
    3604 3dyl:B (2.7) BS01 MN 3.1.4.35 GO:0004114 ... O76083 18757755
    3605 3dys:A (2.3) BS01 MN 3.1.4.35 GO:0004114 ... O76083 18757755
    3606 3dys:A (2.3) BS02 MN 3.1.4.35 GO:0004114 ... O76083 18757755
    3607 3dys:B (2.3) BS01 MN 3.1.4.35 GO:0004114 ... O76083 18757755
    3608 3dys:B (2.3) BS02 MN 3.1.4.35 GO:0004114 ... O76083 18757755
    3609 3e44:A (2.52) BS05 MN 3.1.21.4 GO:0003677 ... P17743 18762194
    3610 3e44:A (2.52) BS06 MN 3.1.21.4 GO:0003677 ... P17743 18762194
    3611 3e44:B (2.52) BS05 MN 3.1.21.4 GO:0003677 ... P17743 18762194
    3612 3e44:B (2.52) BS06 MN 3.1.21.4 GO:0003677 ... P17743 18762194
    3613 3e6k:A (2.1) BS01 MN 3.5.3.1 GO:0000050 ... P05089 19093830
    3614 3e6k:A (2.1) BS02 MN 3.5.3.1 GO:0000050 ... P05089 19093830
    3615 3e6k:B (2.1) BS01 MN 3.5.3.1 GO:0000050 ... P05089 19093830
    3616 3e6k:B (2.1) BS02 MN 3.5.3.1 GO:0000050 ... P05089 19093830
    3617 3e6v:A (1.72) BS01 MN 3.5.3.1 GO:0000050 ... P05089 19093830
    3618 3e6v:A (1.72) BS02 MN 3.5.3.1 GO:0000050 ... P05089 19093830
    3619 3e6v:B (1.72) BS01 MN 3.5.3.1 GO:0000050 ... P05089 19093830
    3620 3e6v:B (1.72) BS02 MN 3.5.3.1 GO:0000050 ... P05089 19093830
    3621 3e7a:A (1.63) BS02 MN 3.1.3.16 GO:0016787 ... P62136 18992256
    3622 3e7a:A (1.63) BS03 MN 3.1.3.16 GO:0016787 ... P62136 18992256
    3623 3e7a:B (1.63) BS02 MN 3.1.3.16 GO:0016787 ... P62136 18992256
    3624 3e7a:B (1.63) BS03 MN 3.1.3.16 GO:0016787 ... P62136 18992256
    3625 3e7b:A (1.7) BS01 MN 3.1.3.16 GO:0016787 ... P62136 18992256
    3626 3e7b:A (1.7) BS02 MN 3.1.3.16 GO:0016787 ... P62136 18992256
    3627 3e7b:B (1.7) BS01 MN 3.1.3.16 GO:0016787 ... P62136 18992256
    3628 3e7b:B (1.7) BS02 MN 3.1.3.16 GO:0016787 ... P62136 18992256
    3629 3e8q:A (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3630 3e8q:A (2.9) BS02 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3631 3e8q:B (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3632 3e8q:B (2.9) BS02 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3633 3e8q:C (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3634 3e8q:C (2.9) BS02 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3635 3e8z:A (2.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3636 3e8z:A (2.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3637 3e8z:B (2.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3638 3e8z:B (2.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3639 3e8z:C (2.0) BS01 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3640 3e8z:C (2.0) BS02 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3641 3e9b:A (2.15) BS01 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3642 3e9b:A (2.15) BS02 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3643 3e9b:B (2.15) BS01 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3644 3e9b:B (2.15) BS02 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3645 3e9b:C (2.15) BS01 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3646 3e9b:C (2.15) BS02 MN 3.5.3.1 GO:0000050 ... P07824 19093830
    3647 3ea3:A (1.78) BS01 MN 4.6.1.13 GO:0004436 ... P08954 19369255
    3648 3ea3:A (1.78) BS02 MN 4.6.1.13 GO:0004436 ... P08954 19369255
    3649 3ea3:B (1.78) BS01 MN 4.6.1.13 GO:0004436 ... P08954 19369255
    3650 3ea3:B (1.78) BS02 MN 4.6.1.13 GO:0004436 ... P08954 19369255
    3651 3ee5:A (2.2) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P15291 19106107
    3652 3ee5:B (2.2) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P15291 19106107
    3653 3ee5:C (2.2) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P15291 19106107
    3654 3egg:A (1.85) BS01 MN 3.1.3.16 GO:0000164 ... P62136 20305656
    3655 3egg:A (1.85) BS02 MN 3.1.3.16 GO:0000164 ... P62136 20305656
    3656 3egg:B (1.85) BS01 MN 3.1.3.16 GO:0000164 ... P62136 20305656
    3657 3egg:B (1.85) BS02 MN 3.1.3.16 GO:0000164 ... P62136 20305656
    3658 3egh:A (2.0) BS02 MN 3.1.3.16 GO:0000164 ... P62136 20305656
    3659 3egh:A (2.0) BS03 MN 3.1.3.16 GO:0000164 ... P62136 20305656
    3660 3egh:B (2.0) BS02 MN 3.1.3.16 GO:0000164 ... P62136 20305656
    3661 3egh:B (2.0) BS03 MN 3.1.3.16 GO:0000164 ... P62136 20305656
    3662 3evk:A (1.85) BS01 MN 1.15.1.1 GO:0004784 ... O93724 N/A
    3663 3evk:B (1.85) BS01 MN 1.15.1.1 GO:0004784 ... O93724 N/A
    3664 3evk:C (1.85) BS01 MN 1.15.1.1 GO:0004784 ... O93724 N/A
    3665 3evk:D (1.85) BS01 MN 1.15.1.1 GO:0004784 ... O93724 N/A
    3666 3exe:A (1.979) BS01 MN 1.2.4.1 GO:0004738 ... P08559 19081061
    3667 3exe:C (1.979) BS01 MN 1.2.4.1 GO:0004738 ... P08559 19081061
    3668 3exe:E (1.979) BS01 MN 1.2.4.1 GO:0004738 ... P08559 19081061
    3669 3exe:G (1.979) BS01 MN 1.2.4.1 GO:0004738 ... P08559 19081061
    3670 3exh:A (2.444) BS01 MN 1.2.4.1 GO:0004738 ... P08559 19081061
    3671 3exh:C (2.444) BS01 MN 1.2.4.1 GO:0004738 ... P08559 19081061
    3672 3exh:E (2.444) BS01 MN 1.2.4.1 GO:0004738 ... P08559 19081061
    3673 3exh:G (2.444) BS01 MN 1.2.4.1 GO:0004738 ... P08559 19081061
    3674 3f05:A (1.4) BS01 MN ? GO:0016020 ... P21579 N/A
    3675 3f2c:A (2.5) BS03 MN 2.7.7.7 GO:0003676 ... Q5L0J3 19106298
    3676 3f2c:A (2.5) BS04 MN 2.7.7.7 GO:0003676 ... Q5L0J3 19106298
    3677 3f2c:A (2.5) BS05 MN 2.7.7.7 GO:0003676 ... Q5L0J3 19106298
    3678 3f2d:A (2.51) BS03 MN 2.7.7.7 GO:0003676 ... Q5L0J3 19106298
    3679 3f2d:A (2.51) BS04 MN 2.7.7.7 GO:0003676 ... Q5L0J3 19106298
    3680 3f2d:A (2.51) BS05 MN 2.7.7.7 GO:0003676 ... Q5L0J3 19106298
    3681 3f7n:A (2.0) BS01 MN ? GO:0000156 ... P0AE67 19646451
    3682 3f7n:B (2.0) BS01 MN ? GO:0000156 ... P0AE67 19646451
    3683 3f80:A (1.6) BS01 MN 3.5.3.1 GO:0000050 ... P05089 19032027
    3684 3f80:A (1.6) BS02 MN 3.5.3.1 GO:0000050 ... P05089 19032027
    3685 3f80:B (1.6) BS02 MN 3.5.3.1 GO:0000050 ... P05089 19032027
    3686 3f80:B (1.6) BS03 MN 3.5.3.1 GO:0000050 ... P05089 19032027
    3687 3f8n:A (3.15) BS01 MN ? GO:0000976 ... P71086 19508285
    3688 3f8n:B (3.15) BS01 MN ? GO:0000976 ... P71086 19508285
    3689 3fa3:J (2.6) BS01 MN 4.1.3.30 GO:0003824 ... Q2L887 19133276
    3690 3fa3:L (2.6) BS01 MN 4.1.3.30 GO:0003824 ... Q2L887 19133276
    3691 3fa3:M (2.6) BS01 MN 4.1.3.30 GO:0003824 ... Q2L887 19133276
    3692 3fa3:N (2.6) BS01 MN 4.1.3.30 GO:0003824 ... Q2L887 19133276
    3693 3fa3:O (2.6) BS01 MN 4.1.3.30 GO:0003824 ... Q2L887 19133276
    3694 3fcm:A (2.2) BS01 MN ? GO:0016787 ... A0A0H2YP99 N/A
    3695 3fcm:B (2.2) BS01 MN ? GO:0016787 ... A0A0H2YP99 N/A
    3696 3fft:A (2.21) BS01 MN ? GO:0000156 ... P0AE67 19646451
    3697 3fft:B (2.21) BS01 MN ? GO:0000156 ... P0AE67 19646451
    3698 3ffw:A (2.0) BS01 MN ? GO:0000156 ... P0AE67 19646451
    3699 3ffw:B (2.0) BS01 MN ? GO:0000156 ... P0AE67 19646451
    3700 3ffx:A (2.01) BS01 MN ? GO:0000156 ... P0AE67 19646451
    3701 3ffx:B (2.01) BS01 MN ? GO:0000156 ... P0AE67 19646451
    3702 3fga:C (2.7) BS02 MN 3.1.3.16 GO:0000159 ... P67775 19716788
    3703 3fga:C (2.7) BS03 MN 3.1.3.16 GO:0000159 ... P67775 19716788
    3704 3fgz:A (2.0) BS01 MN ? GO:0000156 ... P0AE67 19646451
    3705 3fgz:B (2.0) BS01 MN ? GO:0000156 ... P0AE67 19646451
    3706 3fhi:A (2.0) BS02 MN 2.7.11.11 GO:0000122 ... P05132 15692043
    3707 3fij:A (2.3) BS01 MN ? GO:0005829 ... Q92AL3 N/A
    3708 3fij:B (2.3) BS01 MN ? GO:0005829 ... Q92AL3 N/A
    3709 3fij:C (2.3) BS01 MN ? GO:0005829 ... Q92AL3 N/A
    3710 3fij:D (2.3) BS01 MN ? GO:0005829 ... Q92AL3 N/A
    3711 3fij:E (2.3) BS01 MN ? GO:0005829 ... Q92AL3 N/A
    3712 3fij:F (2.3) BS01 MN ? GO:0005829 ... Q92AL3 N/A
    3713 3fij:G (2.3) BS01 MN ? GO:0005829 ... Q92AL3 N/A
    3714 3fij:H (2.3) BS01 MN ? GO:0005829 ... Q92AL3 N/A
    3715 3fjq:E (1.6) BS02 MN 2.7.11.11 GO:0000122 ... P05132 19610074
    3716 3fjw:A (2.8) BS06 MN 1.11.1.16 GO:0000302 ... O94753 N/A
    3717 3fjw:B (2.8) BS07 MN 1.11.1.16 GO:0000302 ... O94753 N/A
    3718 3fvm:A (2.9) BS01 MN 4.2.1.8 GO:0006064 ... A4VVI4 19617363
    3719 3fxj:A (2.5) BS01 MN 3.1.3.16 GO:0000122 ... P35813 N/A
    3720 3fxj:A (2.5) BS02 MN 3.1.3.16 GO:0000122 ... P35813 N/A
    3721 3fxk:A (2.1) BS01 MN 3.1.3.16 GO:0000122 ... P35813 N/A
    3722 3fxk:A (2.1) BS02 MN 3.1.3.16 GO:0000122 ... P35813 N/A
    3723 3fxl:A (2.3) BS01 MN 3.1.3.16 GO:0000122 ... P35813 N/A
    3724 3fxl:A (2.3) BS02 MN 3.1.3.16 GO:0000122 ... P35813 N/A
    3725 3fxm:A (2.5) BS01 MN 3.1.3.16 GO:0000122 ... P35813 N/A
    3726 3fxm:A (2.5) BS02 MN 3.1.3.16 GO:0000122 ... P35813 N/A
    3727 3fxo:A (2.5) BS01 MN 3.1.3.16 GO:0000122 ... P35813 N/A
    3728 3fxo:A (2.5) BS02 MN 3.1.3.16 GO:0000122 ... P35813 N/A
    3729 3fyo:D (1.9) BS02 MN 2.5.1.55 GO:0005737 ... Q9JZ55 19447118
    3730 3fyp:D (1.85) BS02 MN 2.5.1.55 GO:0005737 ... Q9JZ55 19447118
    3731 3g0a:A (2.6) BS01 MN 3.1.11.2
    4.2.99.18
    GO:0003677 ... O26314 20434457
    3732 3g0a:A (2.6) BS02 MN 3.1.11.2
    4.2.99.18
    GO:0003677 ... O26314 20434457
    3733 3g1p:A (1.4) BS02 MN 3.1.4.55 GO:0008081 ... P16692 N/A
    3734 3g1p:A (1.4) BS03 MN 3.1.4.55 GO:0008081 ... P16692 N/A
    3735 3g1p:B (1.4) BS02 MN 3.1.4.55 GO:0008081 ... P16692 N/A
    3736 3g1p:B (1.4) BS03 MN 3.1.4.55 GO:0008081 ... P16692 N/A
    3737 3g82:A (3.11) BS01 MN 4.6.1.1 GO:0009190 ... P30803 N/A
    3738 3g82:A (3.11) BS02 MN 4.6.1.1 GO:0009190 ... P30803 N/A
    3739 3gbr:A (2.25) BS02 MN 2.4.2.18 GO:0000162 ... P50384 19385665
    3740 3gbr:A (2.25) BS03 MN 2.4.2.18 GO:0000162 ... P50384 19385665
    3741 3gbr:B (2.25) BS02 MN 2.4.2.18 GO:0000162 ... P50384 19385665
    3742 3gbr:B (2.25) BS03 MN 2.4.2.18 GO:0000162 ... P50384 19385665
    3743 3gfz:A (2.05) BS02 MN ? GO:0000166 ... A6T8V8 19536266
    3744 3gfz:A (2.05) BS03 MN ? GO:0000166 ... A6T8V8 19536266
    3745 3gfz:B (2.05) BS02 MN ? GO:0000166 ... A6T8V8 19536266
    3746 3gfz:B (2.05) BS03 MN ? GO:0000166 ... A6T8V8 19536266
    3747 3gg0:A (2.55) BS02 MN ? GO:0000166 ... A6T8V8 19536266
    3748 3gg0:A (2.55) BS03 MN ? GO:0000166 ... A6T8V8 19536266
    3749 3gg0:B (2.55) BS02 MN ? GO:0000166 ... A6T8V8 19536266
    3750 3gg0:B (2.55) BS03 MN ? GO:0000166 ... A6T8V8 19536266
    3751 3gg7:A (1.5) BS01 MN ? GO:0016788 ... Q9RZH8 N/A
    3752 3gme:A (2.4) BS02 MN 2.7.7.8 GO:0003723 ... A7ZS61 19327365
    3753 3gme:A (2.4) BS03 MN 2.7.7.8 GO:0003723 ... A7ZS61 19327365
    3754 3gmz:A (1.43) BS01 MN 3.5.3.1 GO:0000050 ... P05089 21728378
    3755 3gmz:A (1.43) BS02 MN 3.5.3.1 GO:0000050 ... P05089 21728378
    3756 3gmz:B (1.43) BS01 MN 3.5.3.1 GO:0000050 ... P05089 21728378
    3757 3gmz:B (1.43) BS02 MN 3.5.3.1 GO:0000050 ... P05089 21728378
    3758 3gn0:A (1.7) BS01 MN 3.5.3.1 GO:0000050 ... P05089 21728378
    3759 3gn0:A (1.7) BS02 MN 3.5.3.1 GO:0000050 ... P05089 21728378
    3760 3gn0:B (1.7) BS01 MN 3.5.3.1 GO:0000050 ... P05089 21728378
    3761 3gn0:B (1.7) BS02 MN 3.5.3.1 GO:0000050 ... P05089 21728378
    3762 3gnx:A (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 N/A
    3763 3gnx:A (2.0) BS03 MN 5.3.1.5 GO:0000287 ... P24300 N/A
    3764 3gnx:E (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 N/A
    3765 3gnx:E (2.0) BS03 MN 5.3.1.5 GO:0000287 ... P24300 N/A
    3766 3god:A (2.17) BS01 MN 3.1.-.- GO:0003676 ... Q02ML7 19523907
    3767 3god:B (2.17) BS01 MN 3.1.-.- GO:0003676 ... Q02ML7 19523907
    3768 3gve:A (1.25) BS01 MN 3.1.3.5
    3.1.3.6
    3.1.4.16
    GO:0000166 ... O34313 N/A
    3769 3gve:B (1.25) BS01 MN 3.1.3.5
    3.1.3.6
    3.1.4.16
    GO:0000166 ... O34313 N/A
    3770 3h0r:B (3.0) BS03 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3771 3h0r:B (3.0) BS04 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3772 3h0r:E (3.0) BS03 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3773 3h0r:E (3.0) BS04 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3774 3h0r:H (3.0) BS03 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3775 3h0r:H (3.0) BS04 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3776 3h0r:K (3.0) BS03 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3777 3h0r:K (3.0) BS04 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3778 3h0r:N (3.0) BS03 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3779 3h0r:N (3.0) BS04 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3780 3h0r:Q (3.0) BS02 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3781 3h0r:Q (3.0) BS04 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3782 3h0r:T (3.0) BS02 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3783 3h0r:W (3.0) BS02 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3784 3h0r:W (3.0) BS03 MN 6.3.5.- GO:0003824 ... O66766 19520089
    3785 3h5x:A (1.77) BS03 MN 3.4.22.66 GO:0003723 ... Q70ET3 19426741
    3786 3h5x:A (1.77) BS04 MN 3.4.22.66 GO:0003723 ... Q70ET3 19426741
    3787 3h5x:A (1.77) BS05 MN 3.4.22.66 GO:0003723 ... Q70ET3 19426741
    3788 3h5y:A (1.77) BS03 MN 3.4.22.66 GO:0003723 ... Q70ET3 19426741
    3789 3h5y:A (1.77) BS04 MN 3.4.22.66 GO:0003723 ... Q70ET3 19426741
    3790 3h5y:A (1.77) BS05 MN 3.4.22.66 GO:0003723 ... Q70ET3 19426741
    3791 3h5y:A (1.77) BS06 MN 3.4.22.66 GO:0003723 ... Q70ET3 19426741
    3792 3h60:A (2.0) BS01 MN 3.1.3.16 GO:0016787 ... P53041 19601647
    3793 3h60:A (2.0) BS02 MN 3.1.3.16 GO:0016787 ... P53041 19601647
    3794 3h60:B (2.0) BS01 MN 3.1.3.16 GO:0016787 ... P53041 19601647
    3795 3h60:B (2.0) BS02 MN 3.1.3.16 GO:0016787 ... P53041 19601647
    3796 3h61:A (1.45) BS01 MN 3.1.3.16 GO:0016787 ... P53041 19601647
    3797 3h61:A (1.45) BS02 MN 3.1.3.16 GO:0016787 ... P53041 19601647
    3798 3h61:D (1.45) BS01 MN 3.1.3.16 GO:0016787 ... P53041 19601647
    3799 3h61:D (1.45) BS02 MN 3.1.3.16 GO:0016787 ... P53041 19601647
    3800 3h62:B (1.4) BS01 MN 3.1.3.16 GO:0016787 ... P53041 19601647

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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