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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3401 2zxp:A (2.3) BS01 MN 3.1.-.- GO:0003676 ... Q5SJ47 20129927
    3402 2zxp:A (2.3) BS02 MN 3.1.-.- GO:0003676 ... Q5SJ47 20129927
    3403 2zxq:A (2.0) BS01 MN 3.2.1.97 GO:0030246 ... Q3T552 19502354
    3404 2zxq:A (2.0) BS02 MN 3.2.1.97 GO:0030246 ... Q3T552 19502354
    3405 2zxq:A (2.0) BS03 MN 3.2.1.97 GO:0030246 ... Q3T552 19502354
    3406 2zxq:A (2.0) BS04 MN 3.2.1.97 GO:0030246 ... Q3T552 19502354
    3407 3a0k:A (1.8) BS01 MN ? GO:0030246 ... D5MNX4 21277932
    3408 3a0k:C (1.8) BS01 MN ? GO:0030246 ... D5MNX4 21277932
    3409 3a0k:E (1.8) BS01 MN ? GO:0030246 ... D5MNX4 21277932
    3410 3a0k:G (1.8) BS02 MN ? GO:0030246 ... D5MNX4 21277932
    3411 3a4k:A (2.17) BS07 MN 3.1.21.4 GO:0004519 ... P43870 19966419
    3412 3a4k:B (2.17) BS05 MN 3.1.21.4 GO:0004519 ... P43870 19966419
    3413 3a4k:C (2.17) BS05 MN 3.1.21.4 GO:0004519 ... P43870 19966419
    3414 3a4k:D (2.17) BS05 MN 3.1.21.4 GO:0004519 ... P43870 19966419
    3415 3a62:A (2.35) BS02 MN 2.7.11.1 GO:0004672 ... P23443 19864428
    3416 3a6d:A (1.9) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3417 3a6d:B (1.9) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3418 3a6d:C (1.9) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3419 3a6d:D (1.9) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3420 3a6d:E (1.9) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3421 3a6d:F (1.9) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3422 3a6e:A (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3423 3a6e:B (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3424 3a6e:C (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3425 3a6e:D (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3426 3a6e:E (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3427 3a6e:F (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3428 3a6f:A (1.78) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3429 3a6f:B (1.78) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3430 3a6f:C (1.78) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3431 3a6f:D (1.78) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3432 3a6f:E (1.78) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3433 3a6f:F (1.78) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3434 3a6g:A (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3435 3a6g:B (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3436 3a6g:C (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3437 3a6g:D (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3438 3a6g:E (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3439 3a6g:F (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3440 3a6h:A (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3441 3a6h:B (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3442 3a6h:C (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3443 3a6h:D (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3444 3a6h:E (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3445 3a6h:F (2.0) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3446 3a6k:A (2.2) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3447 3a6k:B (2.2) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3448 3a6k:C (2.2) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3449 3a6k:D (2.2) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3450 3a6k:E (2.2) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3451 3a6k:F (2.2) BS01 MN 3.5.2.10 GO:0006601 ... P83772 20043918
    3452 3a6u:A (2.56) BS01 MN 3.6.1.55 GO:0000287 ... P08337 19864691
    3453 3a6v:A (2.0) BS01 MN 3.6.1.55 GO:0000287 ... P08337 19864691
    3454 3a6v:B (2.0) BS01 MN 3.6.1.55 GO:0000287 ... P08337 19864691
    3455 3a7j:A (1.5) BS02 MN 2.7.11.1 GO:0004672 ... Q9Y6E0 20124694
    3456 3a9r:A (1.77) BS01 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    3457 3a9r:B (1.77) BS01 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    3458 3a9r:C (1.77) BS01 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    3459 3a9s:A (1.6) BS02 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    3460 3a9s:B (1.6) BS03 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    3461 3a9s:C (1.6) BS01 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    3462 3a9t:A (2.61) BS02 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    3463 3a9t:B (2.61) BS03 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    3464 3a9t:C (2.61) BS03 MN 5.3.1.25 GO:0005737 ... C0SSE7 20123133
    3465 3aam:A (1.58) BS01 MN 3.1.21.2 GO:0003677 ... Q5SK18 21358045
    3466 3ac9:B (2.1) BS03 MN 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0016787 ... Q9UKK9 21768126
    3467 3ac9:B (2.1) BS04 MN 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0016787 ... Q9UKK9 21768126
    3468 3aca:A (2.05) BS01 MN 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0016787 ... Q9UKK9 21768126
    3469 3aca:A (2.05) BS02 MN 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0016787 ... Q9UKK9 21768126
    3470 3aca:B (2.05) BS02 MN 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0016787 ... Q9UKK9 21768126
    3471 3aca:B (2.05) BS03 MN 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0016787 ... Q9UKK9 21768126
    3472 3ak2:A (1.35) BS01 MN 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    3473 3ak2:B (1.35) BS01 MN 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    3474 3ak2:C (1.35) BS01 MN 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    3475 3ak2:D (1.35) BS01 MN 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    3476 3au8:A (1.86) BS02 MN 1.1.1.267 GO:0008299 ... O96693 22355528
    3477 3au8:B (1.86) BS02 MN 1.1.1.267 GO:0008299 ... O96693 22355528
    3478 3auz:A (3.206) BS01 MN 3.1.-.- GO:0006302 ... Q58719 N/A
    3479 3auz:A (3.206) BS02 MN 3.1.-.- GO:0006302 ... Q58719 N/A
    3480 3ax4:A (2.613) BS01 MN ? GO:0005537 ... I1SB09 23353644
    3481 3b59:A (2.53) BS01 MN ? GO:0046872 ... Q2GAG3 N/A
    3482 3b59:B (2.53) BS01 MN ? GO:0046872 ... Q2GAG3 N/A
    3483 3b59:C (2.53) BS01 MN ? GO:0046872 ... Q2GAG3 N/A
    3484 3b59:D (2.53) BS01 MN ? GO:0046872 ... Q2GAG3 N/A
    3485 3b59:E (2.53) BS01 MN ? GO:0046872 ... Q2GAG3 N/A
    3486 3b59:F (2.53) BS01 MN ? GO:0046872 ... Q2GAG3 N/A
    3487 3b6f:E (3.45) BS03 MN ? GO:0000786 ... P84233 18157123
    3488 3b6g:E (3.45) BS03 MN ? GO:0000786 ... P84233 18157123
    3489 3bam:A (1.8) BS04 MN 3.1.21.4 GO:0000287 ... P23940 9783752
    3490 3bdk:A (2.5) BS02 MN 4.2.1.8 GO:0006064 ... A4VVI4 N/A
    3491 3bg3:A (2.8) BS01 MN 6.4.1.1 GO:0003824 ... P11498 18297087
    3492 3bg3:B (2.8) BS02 MN 6.4.1.1 GO:0003824 ... P11498 18297087
    3493 3bg3:C (2.8) BS01 MN 6.4.1.1 GO:0003824 ... P11498 18297087
    3494 3bg3:D (2.8) BS01 MN 6.4.1.1 GO:0003824 ... P11498 18297087
    3495 3bg5:A (2.8) BS01 MN 6.4.1.1 GO:0003824 ... A0A0H3JRU9 18297087
    3496 3bg5:B (2.8) BS02 MN 6.4.1.1 GO:0003824 ... A0A0H3JRU9 18297087
    3497 3bg5:C (2.8) BS01 MN 6.4.1.1 GO:0003824 ... A0A0H3JRU9 18297087
    3498 3bg5:D (2.8) BS02 MN 6.4.1.1 GO:0003824 ... A0A0H3JRU9 18297087
    3499 3bg9:A (3.0) BS01 MN 6.4.1.1 GO:0003824 ... P11498 18297087
    3500 3bg9:B (3.0) BS01 MN 6.4.1.1 GO:0003824 ... P11498 18297087
    3501 3bg9:C (3.0) BS01 MN 6.4.1.1 GO:0003824 ... P11498 18297087
    3502 3bg9:D (3.0) BS01 MN 6.4.1.1 GO:0003824 ... P11498 18297087
    3503 3bi3:A (1.9) BS03 MN 1.14.11.33 GO:0005515 ... P05050 18432238
    3504 3bie:A (1.68) BS03 MN 1.14.11.33 GO:0005515 ... P05050 18432238
    3505 3bkz:A (1.65) BS03 MN 1.14.11.33 GO:0005515 ... P05050 18432238
    3506 3bsn:A (1.8) BS03 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    3507 3bsn:A (1.8) BS04 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    3508 3bsn:A (1.8) BS05 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    3509 3bso:A (1.74) BS03 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    3510 3bso:A (1.74) BS04 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    3511 3bso:A (1.74) BS05 MN 3.4.22.66 GO:0003723 ... Q70ET3 18184655
    3512 3bu0:A (2.5) BS04 MN 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    3513 3buc:A (2.59) BS03 MN 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    3514 3bza:A (1.7) BS01 MN 1.13.11.15 GO:0046872 ... Q45135 18492808
    3515 3bza:B (1.7) BS01 MN 1.13.11.15 GO:0046872 ... Q45135 18492808
    3516 3bza:C (1.7) BS01 MN 1.13.11.15 GO:0046872 ... Q45135 18492808
    3517 3bza:D (1.7) BS01 MN 1.13.11.15 GO:0046872 ... Q45135 18492808
    3518 3bzj:A (2.3) BS01 MN ? GO:0004519 ... Q746K1 19241382
    3519 3c0q:A (2.74) BS01 MN ? GO:0004519 ... Q746K1 19241382
    3520 3c0s:A (1.8) BS01 MN ? GO:0004519 ... Q746K1 19241382
    3521 3c0s:A (1.8) BS02 MN ? GO:0004519 ... Q746K1 19241382
    3522 3c0s:A (1.8) BS03 MN ? GO:0004519 ... Q746K1 19241382
    3523 3c2k:A (2.4) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 18471977
    3524 3c2k:A (2.4) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 18471977
    3525 3c2k:A (2.4) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 18471977
    3526 3c2k:A (2.4) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 18471977
    3527 3c2l:A (2.6) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 18471977
    3528 3c2l:A (2.6) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 18471977
    3529 3c2m:A (2.15) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 18471977
    3530 3c2m:A (2.15) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 18471977
    3531 3c2m:A (2.15) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 18471977
    3532 3c3s:A (2.5) BS01 MN 1.15.1.1 GO:0004784 ... P04179 18373354
    3533 3c3s:B (2.5) BS01 MN 1.15.1.1 GO:0004784 ... P04179 18373354
    3534 3c3t:A (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 18373354
    3535 3c3t:B (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 18373354
    3536 3c5m:A (2.6) BS01 MN ? GO:0016829 ... Q87K10 N/A
    3537 3c5m:B (2.6) BS01 MN ? GO:0016829 ... Q87K10 N/A
    3538 3c5m:C (2.6) BS01 MN ? GO:0016829 ... Q87K10 N/A
    3539 3cev:A (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    3540 3cev:B (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    3541 3cev:C (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    3542 3cev:D (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    3543 3cev:E (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    3544 3cev:F (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    3545 3ck2:A (2.3) BS01 MN 3.1.4.- GO:0005515 ... A0A0H2URP5 N/A
    3546 3ck2:A (2.3) BS02 MN 3.1.4.- GO:0005515 ... A0A0H2URP5 N/A
    3547 3ckn:A (2.2) BS01 MN 2.4.1.266 GO:0016757 ... Q73WU1 18667419
    3548 3ckq:A (3.0) BS01 MN 2.4.1.266 GO:0016757 ... Q73WU1 18667419
    3549 3cm5:A (2.81) BS02 MN 3.1.-.- GO:0000175 ... Q10905 18981218
    3550 3cm5:B (2.81) BS02 MN 3.1.-.- GO:0000175 ... Q10905 18981218
    3551 3cna:A (2.4) BS01 MN ? GO:0030246 ... P02866 4638345
    3552 3cqw:A (2.0) BS02 MN 2.7.11.1 GO:0004672 ... P31749 18456494
    3553 3csb:A (1.999) BS01 MN ? GO:0005515 ... P0AEX9 18602117
    3554 3ctz:A (1.6) BS01 MN 3.4.11.9 GO:0004177 ... Q9NQW7 18515364
    3555 3ctz:A (1.6) BS02 MN 3.4.11.9 GO:0004177 ... Q9NQW7 18515364
    3556 3d27:A (2.2) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 18785729
    3557 3d27:A (2.2) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 18785729
    3558 3d2o:A (2.04) BS01 MN 3.5.4.16 GO:0003933 ... Q5F9K6 19767425
    3559 3d2o:B (2.04) BS01 MN 3.5.4.16 GO:0003933 ... Q5F9K6 19767425
    3560 3d4k:A (1.8) BS04 MN ? GO:0030246 ... P02866 19053475
    3561 3d4k:B (1.8) BS04 MN ? GO:0030246 ... P02866 19053475
    3562 3d4k:C (1.8) BS04 MN ? GO:0030246 ... P02866 19053475
    3563 3d4k:D (1.8) BS04 MN ? GO:0030246 ... P02866 19053475
    3564 3dbn:A (2.9) BS01 MN 4.2.1.8 GO:0006064 ... A4VVI4 19617363
    3565 3dbn:B (2.9) BS01 MN 4.2.1.8 GO:0006064 ... A4VVI4 19617363
    3566 3dc5:A (1.7) BS01 MN 1.15.1.1 GO:0004784 ... P41977 19052361
    3567 3dc5:C (1.7) BS01 MN 1.15.1.1 GO:0004784 ... P41977 19052361
    3568 3dc6:A (1.8) BS01 MN 1.15.1.1 GO:0004784 ... P31161 19052361
    3569 3dc6:C (1.8) BS01 MN 1.15.1.1 GO:0004784 ... P31161 19052361
    3570 3dj8:A (1.51) BS01 MN 3.5.3.1 GO:0000050 ... P05089 18802628
    3571 3dj8:A (1.51) BS02 MN 3.5.3.1 GO:0000050 ... P05089 18802628
    3572 3dj8:B (1.51) BS01 MN 3.5.3.1 GO:0000050 ... P05089 18802628
    3573 3dj8:B (1.51) BS02 MN 3.5.3.1 GO:0000050 ... P05089 18802628
    3574 3dkx:A (2.7) BS01 MN ? GO:0003677 ... P13921 19440202
    3575 3dkx:B (2.7) BS01 MN ? GO:0003677 ... P13921 19440202
    3576 3dkx:C (2.7) BS01 MN ? GO:0003677 ... P13921 19440202
    3577 3dky:A (3.6) BS01 MN ? GO:0003677 ... P13921 19440202
    3578 3dky:B (3.6) BS01 MN ? GO:0003677 ... P13921 19440202
    3579 3dky:C (3.6) BS01 MN ? GO:0003677 ... P13921 19440202
    3580 3dky:F (3.6) BS01 MN ? GO:0003677 ... P13921 19440202
    3581 3dsd:A (2.2) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 18854158
    3582 3dsd:A (2.2) BS03 MN 3.1.-.- GO:0000729 ... Q8U1N9 18854158
    3583 3dsd:B (2.2) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 18854158
    3584 3dsd:B (2.2) BS03 MN 3.1.-.- GO:0000729 ... Q8U1N9 18854158
    3585 3dt2:A (1.5) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 18772387
    3586 3dt4:A (1.45) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 18772387
    3587 3dt4:C (1.45) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 18772387
    3588 3dt7:A (1.5) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 18772387
    3589 3dt7:B (1.5) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 18772387
    3590 3dtb:A (1.3) BS02 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 18772387
    3591 3dtb:B (1.3) BS02 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 18772387
    3592 3dw8:C (2.85) BS02 MN 3.1.3.16 GO:0000159 ... P67775 18922469
    3593 3dw8:C (2.85) BS03 MN 3.1.3.16 GO:0000159 ... P67775 18922469
    3594 3dw8:F (2.85) BS02 MN 3.1.3.16 GO:0000159 ... P67775 18922469
    3595 3dw8:F (2.85) BS03 MN 3.1.3.16 GO:0000159 ... P67775 18922469
    3596 3dw9:A (2.2) BS03 MN 3.1.21.4 GO:0042802 ... Q9F6L0 18701646
    3597 3dw9:A (2.2) BS04 MN 3.1.21.4 GO:0042802 ... Q9F6L0 18701646
    3598 3dw9:B (2.2) BS03 MN 3.1.21.4 GO:0042802 ... Q9F6L0 18701646
    3599 3dw9:B (2.2) BS04 MN 3.1.21.4 GO:0042802 ... Q9F6L0 18701646
    3600 3dx5:A (2.12) BS01 MN 4.2.1.118 GO:0003674 ... Q81RQ4 18955706

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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