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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 2glj:I (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2602 2glj:J (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2603 2glj:J (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2604 2glj:K (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2605 2glj:K (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2606 2glj:L (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2607 2glj:L (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2608 2glj:M (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2609 2glj:M (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2610 2glj:N (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2611 2glj:N (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2612 2glj:O (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2613 2glj:O (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2614 2glj:P (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2615 2glj:P (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2616 2glj:Q (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2617 2glj:Q (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2618 2glj:R (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2619 2glj:R (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2620 2glj:S (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2621 2glj:S (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2622 2glj:T (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2623 2glj:T (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2624 2glj:U (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2625 2glj:U (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2626 2glj:V (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2627 2glj:V (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2628 2glj:W (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2629 2glj:W (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2630 2glj:X (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2631 2glj:X (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2632 2glk:A (0.94) BS01 MN 5.3.1.5 GO:0000287 ... P24300 16707576
    2633 2glk:A (0.94) BS02 MN 5.3.1.5 GO:0000287 ... P24300 16707576
    2634 2gls:A (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2635 2gls:A (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2636 2gls:B (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2637 2gls:B (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2638 2gls:C (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2639 2gls:C (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2640 2gls:D (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2641 2gls:D (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2642 2gls:E (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2643 2gls:E (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2644 2gls:F (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2645 2gls:F (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2646 2gls:G (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2647 2gls:G (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2648 2gls:H (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2649 2gls:H (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2650 2gls:I (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2651 2gls:I (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2652 2gls:J (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2653 2gls:J (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2654 2gls:K (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2655 2gls:K (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2656 2gls:L (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2657 2gls:L (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 2572586
    2658 2gmv:A (2.3) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 17532214
    2659 2gmv:B (2.3) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 17532214
    2660 2gnd:A (2.25) BS03 MN ? GO:0030246 ... Q8GSD2 16824540
    2661 2gnd:B (2.25) BS03 MN ? GO:0030246 ... Q8GSD2 16824540
    2662 2gnm:B (1.95) BS02 MN ? GO:0030246 ... Q8GSD2 16824540
    2663 2gtx:A (2.0) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2664 2gtx:B (2.0) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2665 2gu4:A (1.8) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2666 2gu4:A (1.8) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2667 2gu4:B (1.8) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2668 2gu4:B (1.8) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2669 2gu5:A (1.6) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2670 2gu5:A (1.6) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2671 2gu5:B (1.6) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2672 2gu5:B (1.6) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2673 2gu6:A (1.7) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2674 2gu6:A (1.7) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2675 2gu6:B (1.7) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2676 2gu6:B (1.7) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2677 2gu7:A (2.0) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2678 2gu7:A (2.0) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2679 2gu7:B (2.0) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2680 2gu7:B (2.0) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16769889
    2681 2gui:A (1.6) BS01 MN 2.7.7.7 GO:0003676 ... P03007 N/A
    2682 2gvd:A (2.9) BS01 MN 4.6.1.1 GO:0009190 ... P30803 16766715
    2683 2gvd:A (2.9) BS02 MN 4.6.1.1 GO:0009190 ... P30803 16766715
    2684 2gvd:C (2.9) BS01 MN ? GO:0003924 ... P04896 16766715
    2685 2gvz:A (3.27) BS01 MN 4.6.1.1 GO:0009190 ... P30803 16766715
    2686 2gvz:C (3.27) BS01 MN ? GO:0003924 ... P04896 16766715
    2687 2hbk:A (2.25) BS01 MN 3.1.13.- GO:0000166 ... Q12149 16882719
    2688 2hbk:A (2.25) BS02 MN 3.1.13.- GO:0000166 ... Q12149 16882719
    2689 2hbl:A (2.3) BS02 MN 3.1.13.- GO:0000166 ... Q12149 16882719
    2690 2hhw:A (1.88) BS05 MN 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    2691 2hhw:D (1.88) BS05 MN 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    2692 2hk1:A (2.3) BS02 MN 5.1.3.30 GO:0016853 ... A9CH28 16876192
    2693 2hk1:B (2.3) BS02 MN 5.1.3.30 GO:0016853 ... A9CH28 16876192
    2694 2hk1:C (2.3) BS02 MN 5.1.3.30 GO:0016853 ... A9CH28 16876192
    2695 2hk1:D (2.3) BS02 MN 5.1.3.30 GO:0016853 ... A9CH28 16876192
    2696 2hvh:A (2.492) BS06 MN 2.7.7.7 GO:0003676 ... Q45458 17179038
    2697 2hvh:D (2.492) BS05 MN 2.7.7.7 GO:0003676 ... Q45458 17179038
    2698 2hxg:A (2.8) BS01 MN 5.3.1.4 GO:0005737 ... P08202 N/A
    2699 2hxg:B (2.8) BS01 MN 5.3.1.4 GO:0005737 ... P08202 N/A
    2700 2hxg:C (2.8) BS01 MN 5.3.1.4 GO:0005737 ... P08202 N/A
    2701 2hy1:A (1.932) BS02 MN 3.1.4.16
    3.1.4.17
    GO:0004112 ... P9WP65 17059828
    2702 2hyo:A (2.25) BS02 MN 3.1.4.16
    3.1.4.17
    GO:0004112 ... P9WP65 17059828
    2703 2hyp:A (2.05) BS02 MN 3.1.4.16
    3.1.4.17
    GO:0004112 ... P9WP65 17059828
    2704 2hzy:A (1.35) BS01 MN 3.7.1.2 GO:0003824 ... P35505 17064256
    2705 2hzy:B (1.35) BS02 MN 3.7.1.2 GO:0003824 ... P35505 17064256
    2706 2i0k:A (1.6) BS01 MN 1.1.3.6 GO:0000166 ... Q7SID9 16856877
    2707 2i0k:A (1.6) BS02 MN 1.1.3.6 GO:0000166 ... Q7SID9 16856877
    2708 2i6k:A (2.0) BS01 MN 5.3.3.2 GO:0004452 ... Q13907 17137593
    2709 2i6k:B (2.0) BS01 MN 5.3.3.2 GO:0004452 ... Q13907 17137593
    2710 2i6q:A (2.1) BS01 MN 3.4.21.43 GO:0004252 ... P06681 17027507
    2711 2iae:C (3.5) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17086192
    2712 2iae:C (3.5) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17086192
    2713 2iae:F (3.5) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17086192
    2714 2iae:F (3.5) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17086192
    2715 2iaj:A (2.5) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 17056061
    2716 2iaj:A (2.5) BS02 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 17056061
    2717 2iaj:A (2.5) BS03 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 17056061
    2718 2ic3:A (3.0) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 17056061
    2719 2ick:A (1.93) BS01 MN 5.3.3.2 GO:0004452 ... Q13907 17250851
    2720 2id0:A (2.35) BS01 MN 3.1.13.1 GO:0003676 ... P30850 16996291
    2721 2id0:B (2.35) BS01 MN 3.1.13.1 GO:0003676 ... P30850 16996291
    2722 2id0:C (2.35) BS01 MN 3.1.13.1 GO:0003676 ... P30850 16996291
    2723 2id0:D (2.35) BS01 MN 3.1.13.1 GO:0003676 ... P30850 16996291
    2724 2ido:A (2.1) BS01 MN 2.7.7.7 GO:0003676 ... P03007 16973612
    2725 2ido:C (2.1) BS01 MN 2.7.7.7 GO:0003676 ... P03007 16973612
    2726 2ie3:C (2.8) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17055435
    2727 2ie3:C (2.8) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17055435
    2728 2ie4:C (2.6) BS01 MN 3.1.3.16 GO:0000159 ... P67775 17055435
    2729 2ie4:C (2.6) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17055435
    2730 2if8:A (2.4) BS01 MN 2.7.1.127
    2.7.1.151
    GO:0000122 ... P07250 17050532
    2731 2ify:A (2.38) BS01 MN 5.4.2.12 GO:0003824 ... Q81X77 17085493
    2732 2ify:A (2.38) BS02 MN 5.4.2.12 GO:0003824 ... Q81X77 17085493
    2733 2iie:A (2.41) BS04 MN ? GO:0000976 ... P0A6X7
    P0A6Y1
    17276457
    2734 2iif:A (2.72) BS04 MN ? GO:0000976 ... P0A6X7
    P0A6Y1
    17276457
    2735 2ilz:A (2.5) BS01 MN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... P03300 17223130
    2736 2im1:A (2.5) BS01 MN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... P03300 17223130
    2737 2im3:A (2.6) BS01 MN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... P03300 17223130
    2738 2ind:A (2.2) BS01 MN ? GO:0004497 ... O87798 17117860
    2739 2ind:A (2.2) BS02 MN ? GO:0004497 ... O87798 17117860
    2740 2ioc:A (2.1) BS01 MN 3.1.11.2 GO:0003676 ... Q91XB0 17293595
    2741 2ioc:B (2.1) BS01 MN 3.1.11.2 GO:0003676 ... Q91XB0 17293595
    2742 2irx:A (1.8) BS01 MN 6.5.1.1 N/A P9WNV3 17174332
    2743 2iry:A (1.78) BS01 MN 6.5.1.1 N/A P9WNV3 17174332
    2744 2iry:B (1.78) BS01 MN 6.5.1.1 N/A P9WNV3 17174332
    2745 2iw4:A (2.15) BS04 MN 3.6.1.1 GO:0004427 ... P37487 17095506
    2746 2iw4:A (2.15) BS05 MN 3.6.1.1 GO:0004427 ... P37487 17095506
    2747 2iw4:B (2.15) BS04 MN 3.6.1.1 GO:0004427 ... P37487 17095506
    2748 2j0b:A (2.1) BS01 MN 2.4.1.222 GO:0016020 ... O09008 16964258
    2749 2j18:A (1.75) BS01 MN 1.11.1.10 GO:0004601 ... P04963 17211068
    2750 2j19:A (1.75) BS01 MN 1.11.1.10 GO:0004601 ... P04963 17211068
    2751 2j3m:A (2.3) BS03 MN 6.1.1.15 GO:0000166 ... Q831W7 17027500
    2752 2j3m:B (2.3) BS03 MN 6.1.1.15 GO:0000166 ... Q831W7 17027500
    2753 2j5m:A (1.75) BS01 MN 1.11.1.10 GO:0004601 ... P04963 17190816
    2754 2j6v:A (1.55) BS01 MN ? GO:0004519 ... Q746K1 17937920
    2755 2j6v:A (1.55) BS02 MN ? GO:0004519 ... Q746K1 17937920
    2756 2j6v:A (1.55) BS03 MN ? GO:0004519 ... Q746K1 17937920
    2757 2j6v:B (1.55) BS01 MN ? GO:0004519 ... Q746K1 17937920
    2758 2j6v:B (1.55) BS02 MN ? GO:0004519 ... Q746K1 17937920
    2759 2j6v:B (1.55) BS03 MN ? GO:0004519 ... Q746K1 17937920
    2760 2j9f:A (1.88) BS01 MN 1.2.4.4 GO:0003863 ... P12694 17329260
    2761 2j9f:C (1.88) BS01 MN 1.2.4.4 GO:0003863 ... P12694 17329260
    2762 2jcd:A (2.11) BS01 MN 1.14.99.68 GO:0016491 ... Q70KH9 17765264
    2763 2jcd:A (2.11) BS02 MN 1.14.99.68 GO:0016491 ... Q70KH9 17765264
    2764 2jcd:B (2.11) BS01 MN 1.14.99.68 GO:0016491 ... Q70KH9 17765264
    2765 2jcd:B (2.11) BS02 MN 1.14.99.68 GO:0016491 ... Q70KH9 17765264
    2766 2jcj:A (2.02) BS02 MN 2.4.1.87 GO:0005975 ... P14769 17493636
    2767 2jck:A (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 17493636
    2768 2jck:A (1.8) BS03 MN 2.4.1.87 GO:0005975 ... P14769 17493636
    2769 2jd1:A (2.0) BS02 MN 1.1.1.267 GO:0000287 ... P9WNS1 17491006
    2770 2jd1:B (2.0) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 17491006
    2771 2jd2:A (2.15) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 17491006
    2772 2jd2:B (2.15) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 17491006
    2773 2jdz:A (2.1) BS01 MN ? GO:0005537 ... P81637 17937659
    2774 2jdz:A (2.1) BS03 MN ? GO:0005537 ... P81637 17937659
    2775 2je7:A (1.65) BS01 MN ? GO:0005537 ... P81637 17937659
    2776 2je9:A (2.1) BS02 MN ? GO:0005537 ... P08902 17937659
    2777 2je9:B (2.1) BS02 MN ? GO:0005537 ... P08902 17937659
    2778 2je9:C (2.1) BS02 MN ? GO:0005537 ... P08902 17937659
    2779 2je9:D (2.1) BS02 MN ? GO:0005537 ... P08902 17937659
    2780 2jec:A (2.0) BS02 MN ? GO:0005537 ... P08902 17937659
    2781 2jec:B (2.0) BS02 MN ? GO:0005537 ... P08902 17937659
    2782 2jec:C (2.0) BS02 MN ? GO:0005537 ... P08902 17937659
    2783 2jec:C (2.0) BS04 MN ? GO:0005537 ... P08902 17937659
    2784 2jec:D (2.0) BS02 MN ? GO:0005537 ... P08902 17937659
    2785 2jfr:A (0.83) BS02 MN 3.1.3.16 GO:0004722 ... A0QTQ6 17637345
    2786 2jfs:A (1.45) BS01 MN 3.1.3.16 GO:0004722 ... A0QTQ6 17637345
    2787 2jfs:A (1.45) BS02 MN 3.1.3.16 GO:0004722 ... A0QTQ6 17637345
    2788 2jfs:A (1.45) BS03 MN 3.1.3.16 GO:0004722 ... A0QTQ6 17637345
    2789 2jft:A (1.08) BS02 MN 3.1.3.16 GO:0004722 ... A0QTQ6 17637345
    2790 2jgu:A (2.6) BS01 MN 2.7.7.7 GO:0000166 ... P61875 18355915
    2791 2jgu:A (2.6) BS02 MN 2.7.7.7 GO:0000166 ... P61875 18355915
    2792 2jla:A (2.81) BS02 MN 2.2.1.9 GO:0000287 ... P17109 18983854
    2793 2jla:B (2.81) BS03 MN 2.2.1.9 GO:0000287 ... P17109 18983854
    2794 2jla:C (2.81) BS02 MN 2.2.1.9 GO:0000287 ... P17109 18983854
    2795 2jla:C (2.81) BS03 MN 2.2.1.9 GO:0000287 ... P17109 18983854
    2796 2jla:D (2.81) BS03 MN 2.2.1.9 GO:0000287 ... P17109 18983854
    2797 2jlb:A (2.5) BS02 MN ? GO:0016757 ... Q8PC69 18818698
    2798 2jlb:B (2.5) BS02 MN ? GO:0016757 ... Q8PC69 18818698
    2799 2jlc:A (2.5) BS02 MN 2.2.1.9 GO:0000287 ... P17109 18983854
    2800 2jlc:B (2.5) BS03 MN 2.2.1.9 GO:0000287 ... P17109 18983854

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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