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BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 2ea2:A (2.5) BS01 MN 3.4.11.18 GO:0006508 ... P50579 17350258
    2402 2ea2:A (2.5) BS02 MN 3.4.11.18 GO:0006508 ... P50579 17350258
    2403 2ea4:A (2.35) BS01 MN 3.4.11.18 GO:0006508 ... P50579 17350258
    2404 2ea4:A (2.35) BS02 MN 3.4.11.18 GO:0006508 ... P50579 17350258
    2405 2eb0:A (2.2) BS01 MN 3.6.1.1 GO:0004427 ... Q58025 N/A
    2406 2eb0:A (2.2) BS02 MN 3.6.1.1 GO:0004427 ... Q58025 N/A
    2407 2eb0:B (2.2) BS01 MN 3.6.1.1 GO:0004427 ... Q58025 N/A
    2408 2eb0:B (2.2) BS02 MN 3.6.1.1 GO:0004427 ... Q58025 N/A
    2409 2ef5:A (2.0) BS01 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2410 2ef5:A (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2411 2ef5:B (2.0) BS01 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2412 2ef5:B (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2413 2ef5:D (2.0) BS01 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2414 2ef5:D (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2415 2ef5:E (2.0) BS01 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2416 2ef5:E (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2417 2ef5:F (2.0) BS01 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2418 2ef5:F (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2419 2ef5:G (2.0) BS01 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2420 2ef5:G (2.0) BS02 MN 3.5.3.1 GO:0004053 ... Q5SI78 N/A
    2421 2ef6:A (2.1) BS04 MN ? GO:0030246 ... P14894 17881248
    2422 2ef6:B (2.1) BS04 MN ? GO:0030246 ... P14894 17881248
    2423 2ef6:C (2.1) BS04 MN ? GO:0030246 ... P14894 17881248
    2424 2ef6:D (2.1) BS04 MN ? GO:0030246 ... P14894 17881248
    2425 2eig:A (2.0) BS01 MN ? GO:0030246 ... D0VWW1 18068379
    2426 2eig:B (2.0) BS01 MN ? GO:0030246 ... D0VWW1 18068379
    2427 2eig:C (2.0) BS01 MN ? GO:0030246 ... D0VWW1 18068379
    2428 2eig:D (2.0) BS01 MN ? GO:0030246 ... D0VWW1 18068379
    2429 2enx:A (2.8) BS01 MN 3.6.1.1 GO:0004427 ... Q3K0B5 17505113
    2430 2enx:A (2.8) BS02 MN 3.6.1.1 GO:0004427 ... Q3K0B5 17505113
    2431 2enx:B (2.8) BS01 MN 3.6.1.1 GO:0004427 ... Q3K0B5 17505113
    2432 2enx:B (2.8) BS02 MN 3.6.1.1 GO:0004427 ... Q3K0B5 17505113
    2433 2et1:A (1.6) BS01 MN 1.2.3.4 GO:0004784 ... P45850 16291738
    2434 2et7:A (1.7) BS01 MN 1.2.3.4 GO:0004784 ... P45850 16291738
    2435 2ete:A (1.75) BS01 MN 1.2.3.4 GO:0004784 ... P45850 16291738
    2436 2ete:B (1.75) BS01 MN 1.2.3.4 GO:0004784 ... P45850 16291738
    2437 2evc:A (1.6) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16552144
    2438 2evc:A (1.6) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16552144
    2439 2evm:A (1.7) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 16552144
    2440 2evm:A (1.7) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 16552144
    2441 2f1d:A (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2442 2f1d:A (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2443 2f1d:B (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2444 2f1d:B (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2445 2f1d:C (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2446 2f1d:C (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2447 2f1d:D (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2448 2f1d:D (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2449 2f1d:E (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2450 2f1d:E (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2451 2f1d:F (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2452 2f1d:G (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2453 2f1d:G (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2454 2f1d:H (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2455 2f1d:I (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2456 2f1d:I (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2457 2f1d:J (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2458 2f1d:J (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2459 2f1d:K (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2460 2f1d:K (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2461 2f1d:L (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2462 2f1d:L (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2463 2f1d:M (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2464 2f1d:M (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2465 2f1d:N (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2466 2f1d:O (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2467 2f1d:O (3.0) BS02 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2468 2f1d:P (3.0) BS01 MN 4.2.1.19 GO:0000105 ... P34047 16338409
    2469 2f4f:A (1.8) BS01 MN ? GO:0003677 ... Q97Y68 16340015
    2470 2f4f:B (1.8) BS01 MN ? GO:0003677 ... Q97Y68 16340015
    2471 2f5c:A (2.4) BS01 MN ? GO:0003677 ... P54512 16533030
    2472 2f5c:A (2.4) BS02 MN ? GO:0003677 ... P54512 16533030
    2473 2f5d:A (1.9) BS01 MN ? GO:0003677 ... P54512 16533030
    2474 2f5d:A (1.9) BS02 MN ? GO:0003677 ... P54512 16533030
    2475 2f5d:B (1.9) BS01 MN ? GO:0003677 ... P54512 16533030
    2476 2f5d:B (1.9) BS02 MN ? GO:0003677 ... P54512 16533030
    2477 2f5e:A (2.2) BS01 MN ? GO:0003677 ... P54512 16533030
    2478 2f5e:A (2.2) BS02 MN ? GO:0003677 ... P54512 16533030
    2479 2f5e:B (2.2) BS01 MN ? GO:0003677 ... P54512 16533030
    2480 2f5e:B (2.2) BS02 MN ? GO:0003677 ... P54512 16533030
    2481 2f5f:A (2.4) BS01 MN ? GO:0003677 ... P54512 16533030
    2482 2f5f:A (2.4) BS02 MN ? GO:0003677 ... P54512 16533030
    2483 2f5f:B (2.4) BS01 MN ? GO:0003677 ... P54512 16533030
    2484 2f5f:B (2.4) BS02 MN ? GO:0003677 ... P54512 16533030
    2485 2f6k:A (2.5) BS01 MN 4.1.1.52 GO:0005737 ... F9US96 N/A
    2486 2f6k:B (2.5) BS01 MN 4.1.1.52 GO:0005737 ... F9US96 N/A
    2487 2f89:F (2.6) BS02 MN 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 16892359
    2488 2f89:F (2.6) BS03 MN 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 16892359
    2489 2faf:A (1.7) BS03 MN 4.1.1.32 GO:0004611 ... P21642 16819824
    2490 2faf:B (1.7) BS02 MN 4.1.1.32 GO:0004611 ... P21642 16819824
    2491 2fah:A (2.09) BS02 MN 4.1.1.32 GO:0004611 ... P21642 16819824
    2492 2fah:A (2.09) BS03 MN 4.1.1.32 GO:0004611 ... P21642 16819824
    2493 2fah:B (2.09) BS02 MN 4.1.1.32 GO:0004611 ... P21642 16819824
    2494 2fah:B (2.09) BS03 MN 4.1.1.32 GO:0004611 ... P21642 16819824
    2495 2fah:C (2.09) BS03 MN 4.1.1.32 GO:0004611 ... P21642 16819824
    2496 2fah:C (2.09) BS04 MN 4.1.1.32 GO:0004611 ... P21642 16819824
    2497 2fah:D (2.09) BS04 MN 4.1.1.32 GO:0004611 ... P21642 16819824
    2498 2fah:D (2.09) BS05 MN 4.1.1.32 GO:0004611 ... P21642 16819824
    2499 2faq:A (1.9) BS01 MN 6.5.1.1 N/A Q9I1X7 16446439
    2500 2faq:A (1.9) BS02 MN 6.5.1.1 N/A Q9I1X7 16446439
    2501 2faq:B (1.9) BS01 MN 6.5.1.1 N/A Q9I1X7 16446439
    2502 2faq:B (1.9) BS02 MN 6.5.1.1 N/A Q9I1X7 16446439
    2503 2far:A (1.9) BS01 MN 6.5.1.1 N/A Q9I1X7 16446439
    2504 2far:A (1.9) BS02 MN 6.5.1.1 N/A Q9I1X7 16446439
    2505 2far:B (1.9) BS01 MN 6.5.1.1 N/A Q9I1X7 16446439
    2506 2far:B (1.9) BS02 MN 6.5.1.1 N/A Q9I1X7 16446439
    2507 2fbv:A (2.4) BS01 MN 3.1.-.-
    5.6.2.4
    GO:0003676 ... Q14191 16622405
    2508 2fc0:A (2.0) BS01 MN 3.1.-.-
    5.6.2.4
    GO:0003676 ... Q14191 16622405
    2509 2fdh:A (2.1) BS02 MN 1.14.11.33 GO:0005515 ... P05050 16482161
    2510 2ffl:A (3.33) BS01 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2511 2ffl:A (3.33) BS02 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2512 2ffl:A (3.33) BS03 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2513 2ffl:A (3.33) BS04 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2514 2ffl:A (3.33) BS05 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2515 2ffl:A (3.33) BS06 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2516 2ffl:A (3.33) BS07 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2517 2ffl:A (3.33) BS08 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2518 2ffl:B (3.33) BS01 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2519 2ffl:B (3.33) BS02 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2520 2ffl:B (3.33) BS03 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2521 2ffl:B (3.33) BS04 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2522 2ffl:B (3.33) BS05 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2523 2ffl:B (3.33) BS06 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2524 2ffl:B (3.33) BS07 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2525 2ffl:C (3.33) BS01 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2526 2ffl:C (3.33) BS02 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2527 2ffl:C (3.33) BS03 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2528 2ffl:C (3.33) BS04 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2529 2ffl:C (3.33) BS05 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2530 2ffl:C (3.33) BS06 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2531 2ffl:C (3.33) BS07 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2532 2ffl:C (3.33) BS08 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2533 2ffl:D (3.33) BS01 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2534 2ffl:D (3.33) BS02 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2535 2ffl:D (3.33) BS03 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2536 2ffl:D (3.33) BS04 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2537 2ffl:D (3.33) BS05 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2538 2ffl:D (3.33) BS06 MN 3.1.26.- GO:0000166 ... A8BQJ3 16410517
    2539 2ffu:A (1.64) BS02 MN 2.4.1.41 N/A Q10471 16434399
    2540 2ffv:A (2.75) BS01 MN 2.4.1.41 N/A Q10471 16434399
    2541 2ffv:B (2.75) BS01 MN 2.4.1.41 N/A Q10471 16434399
    2542 2fmd:A (1.9) BS04 MN ? GO:0005575 ... P42088 16567368
    2543 2fv2:A (2.2) BS01 MN ? GO:0000289 ... Q92600 17189474
    2544 2fv2:C (2.2) BS01 MN ? GO:0000289 ... Q92600 17189474
    2545 2fya:A (1.9) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P15291 16497331
    2546 2fyb:A (1.9) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P15291 16497331
    2547 2fyd:B (2.0) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 16497331
    2548 2fyd:D (2.0) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 16497331
    2549 2g38:B (2.2) BS01 MN ? GO:0005515 ... Q79FE1 16690741
    2550 2g38:D (2.2) BS01 MN ? GO:0005515 ... Q79FE1 16690741
    2551 2g4i:A (2.4) BS01 MN ? GO:0005515 ... P81461 17327674
    2552 2g50:A (1.65) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 16634623
    2553 2g50:B (1.65) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 16634623
    2554 2g50:C (1.65) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 16634623
    2555 2g50:D (1.65) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 16634623
    2556 2g50:E (1.65) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 16634623
    2557 2g50:F (1.65) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 16634623
    2558 2g50:G (1.65) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 16634623
    2559 2g50:H (1.65) BS01 MN 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 16634623
    2560 2g73:A (1.97) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 16617181
    2561 2g73:B (1.97) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 16617181
    2562 2g74:A (1.96) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 16617181
    2563 2g74:B (1.96) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 16617181
    2564 2g8i:A (1.65) BS03 MN 3.1.26.4 GO:0003676 ... Q9KEI9 16601679
    2565 2g8i:A (1.65) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 16601679
    2566 2g8i:A (1.65) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 16601679
    2567 2g8i:A (1.65) BS06 MN 3.1.26.4 GO:0003676 ... Q9KEI9 16601679
    2568 2ga2:A (1.95) BS01 MN 3.4.11.18 GO:0006508 ... P50579 16632353
    2569 2ga2:A (1.95) BS02 MN 3.4.11.18 GO:0006508 ... P50579 16632353
    2570 2gdf:B (2.4) BS01 MN ? GO:0005537 ... P08902 N/A
    2571 2gdf:D (2.4) BS01 MN ? GO:0005537 ... P08902 N/A
    2572 2gds:A (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 10488113
    2573 2gds:B (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 10488113
    2574 2gds:C (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 10488113
    2575 2gds:D (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 10488113
    2576 2glf:A (2.8) BS01 MN 3.4.11.- GO:0004177 ... Q9WYJ9 N/A
    2577 2glf:A (2.8) BS02 MN 3.4.11.- GO:0004177 ... Q9WYJ9 N/A
    2578 2glf:B (2.8) BS01 MN 3.4.11.- GO:0004177 ... Q9WYJ9 N/A
    2579 2glf:B (2.8) BS02 MN 3.4.11.- GO:0004177 ... Q9WYJ9 N/A
    2580 2glf:C (2.8) BS01 MN 3.4.11.- GO:0004177 ... Q9WYJ9 N/A
    2581 2glf:C (2.8) BS02 MN 3.4.11.- GO:0004177 ... Q9WYJ9 N/A
    2582 2glf:D (2.8) BS01 MN 3.4.11.- GO:0004177 ... Q9WYJ9 N/A
    2583 2glf:D (2.8) BS02 MN 3.4.11.- GO:0004177 ... Q9WYJ9 N/A
    2584 2glj:A (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2585 2glj:A (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2586 2glj:B (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2587 2glj:B (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2588 2glj:C (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2589 2glj:C (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2590 2glj:D (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2591 2glj:D (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2592 2glj:E (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2593 2glj:E (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2594 2glj:F (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2595 2glj:F (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2596 2glj:G (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2597 2glj:G (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2598 2glj:H (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2599 2glj:H (3.2) BS02 MN 3.4.11.- GO:0004177 ... Q97K30 N/A
    2600 2glj:I (3.2) BS01 MN 3.4.11.- GO:0004177 ... Q97K30 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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