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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 2cj1:A (1.7) BS01 MN 1.11.1.10 GO:0004601 ... P04963 16790441
    2202 2cj2:A (1.6) BS01 MN 1.11.1.10 GO:0004601 ... P04963 16790441
    2203 2cm1:A (2.0) BS01 MN 3.1.3.16 GO:0004722 ... P9WHW5 17961594
    2204 2cm1:A (2.0) BS02 MN 3.1.3.16 GO:0004722 ... P9WHW5 17961594
    2205 2cna:A (2.0) BS01 MN ? GO:0030246 ... P02866 1112816
    2206 2cpo:A (2.1) BS07 MN 1.11.1.10 GO:0004601 ... P04963 8747463
    2207 2ctv:A (1.95) BS01 MN ? GO:0030246 ... P02866 N/A
    2208 2cwm:A (1.95) BS02 MN ? GO:0030246 ... P81364 16337811
    2209 2cwm:D (1.95) BS02 MN ? GO:0030246 ... P81364 16337811
    2210 2cy6:A (2.0) BS03 MN ? GO:0005515 ... P81460 16677825
    2211 2cy6:D (2.0) BS03 MN ? GO:0005515 ... P81460 16677825
    2212 2cyf:A (1.8) BS04 MN ? GO:0005537 ... P55915 16677825
    2213 2cyf:C (1.8) BS03 MN ? GO:0005537 ... P55915 16677825
    2214 2d0c:A (2.6) BS01 MN 3.1.26.4 GO:0000287 ... Q6L6Q4 16343535
    2215 2d3a:A (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2216 2d3a:A (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2217 2d3a:A (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2218 2d3a:B (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2219 2d3a:B (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2220 2d3a:B (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2221 2d3a:C (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2222 2d3a:C (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2223 2d3a:C (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2224 2d3a:D (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2225 2d3a:D (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2226 2d3a:D (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2227 2d3a:E (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2228 2d3a:E (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2229 2d3a:E (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2230 2d3a:F (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2231 2d3a:F (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2232 2d3a:F (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2233 2d3a:G (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2234 2d3a:G (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2235 2d3a:G (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2236 2d3a:H (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2237 2d3a:H (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2238 2d3a:H (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2239 2d3a:I (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2240 2d3a:I (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2241 2d3a:I (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2242 2d3a:J (2.63) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2243 2d3a:J (2.63) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2244 2d3a:J (2.63) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2245 2d3b:A (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2246 2d3b:A (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2247 2d3b:A (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2248 2d3b:B (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2249 2d3b:B (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2250 2d3b:B (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2251 2d3b:C (3.5) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2252 2d3b:C (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2253 2d3b:C (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2254 2d3b:D (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2255 2d3b:D (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2256 2d3b:D (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2257 2d3b:E (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2258 2d3b:E (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2259 2d3b:E (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2260 2d3b:F (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2261 2d3b:F (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2262 2d3b:F (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2263 2d3b:G (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2264 2d3b:G (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2265 2d3b:G (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2266 2d3b:H (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2267 2d3b:H (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2268 2d3b:H (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2269 2d3b:I (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2270 2d3b:I (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2271 2d3b:I (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2272 2d3b:J (3.5) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2273 2d3b:J (3.5) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2274 2d3b:J (3.5) BS04 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2275 2d3c:A (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2276 2d3c:A (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2277 2d3c:A (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2278 2d3c:B (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2279 2d3c:B (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2280 2d3c:B (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2281 2d3c:C (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2282 2d3c:C (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2283 2d3c:C (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2284 2d3c:D (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2285 2d3c:D (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2286 2d3c:D (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2287 2d3c:E (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2288 2d3c:E (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2289 2d3c:E (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2290 2d3c:F (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2291 2d3c:F (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2292 2d3c:F (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2293 2d3c:G (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2294 2d3c:G (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2295 2d3c:G (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2296 2d3c:H (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2297 2d3c:H (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2298 2d3c:H (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2299 2d3c:I (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2300 2d3c:I (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2301 2d3c:I (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2302 2d3c:J (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2303 2d3c:J (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2304 2d3c:J (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2305 2d3p:A (2.8) BS02 MN ? GO:0005537 ... P81517 17251039
    2306 2d3p:B (2.8) BS02 MN ? GO:0005537 ... P81517 17251039
    2307 2d3p:C (2.8) BS02 MN ? GO:0005537 ... P81517 17251039
    2308 2d3p:D (2.8) BS02 MN ? GO:0005537 ... P81517 17251039
    2309 2d3r:A (2.9) BS02 MN ? GO:0005537 ... P81517 17251039
    2310 2d3r:B (2.9) BS02 MN ? GO:0005537 ... P81517 17251039
    2311 2d3r:C (2.9) BS02 MN ? GO:0005537 ... P81517 17251039
    2312 2d3r:D (2.9) BS02 MN ? GO:0005537 ... P81517 17251039
    2313 2d3s:A (2.35) BS02 MN ? GO:0030246 ... O24313 16310781
    2314 2d3s:B (2.35) BS02 MN ? GO:0030246 ... O24313 16310781
    2315 2d3s:C (2.35) BS02 MN ? GO:0030246 ... O24313 16310781
    2316 2d3s:D (2.35) BS02 MN ? GO:0030246 ... O24313 16310781
    2317 2d7f:A (2.31) BS02 MN ? GO:0030246 ... P14894 17683532
    2318 2d7f:F (2.31) BS02 MN ? GO:0030246 ... P14894 17683532
    2319 2d7f:L (2.31) BS02 MN ? GO:0030246 ... P14894 17683532
    2320 2d7f:S (2.31) BS02 MN ? GO:0030246 ... P14894 17683532
    2321 2d7i:A (2.5) BS01 MN 2.4.1.41 GO:0000139 ... Q86SR1 16650853
    2322 2d7r:A (2.8) BS01 MN 2.4.1.41 GO:0000139 ... Q86SR1 16650853
    2323 2df4:B (3.2) BS01 MN 6.3.5.- GO:0003824 ... P64201 16809541
    2324 2df4:B (3.2) BS02 MN 6.3.5.- GO:0003824 ... P64201 16809541
    2325 2dfj:A (2.72) BS01 MN 3.6.1.41 GO:0005737 ... Q83SQ2 17006950
    2326 2dfj:A (2.72) BS02 MN 3.6.1.41 GO:0005737 ... Q83SQ2 17006950
    2327 2dfj:B (2.72) BS01 MN 3.6.1.41 GO:0005737 ... Q83SQ2 17006950
    2328 2dfj:B (2.72) BS02 MN 3.6.1.41 GO:0005737 ... Q83SQ2 17006950
    2329 2dho:A (1.6) BS01 MN 5.3.3.2 GO:0004452 ... Q13907 17137593
    2330 2dho:A (1.6) BS02 MN 5.3.3.2 GO:0004452 ... Q13907 17137593
    2331 2dho:A (1.6) BS03 MN 5.3.3.2 GO:0004452 ... Q13907 17137593
    2332 2dho:A (1.6) BS04 MN 5.3.3.2 GO:0004452 ... Q13907 17137593
    2333 2dho:A (1.6) BS05 MN 5.3.3.2 GO:0004452 ... Q13907 17137593
    2334 2dho:A (1.6) BS06 MN 5.3.3.2 GO:0004452 ... Q13907 17137593
    2335 2dti:A (2.2) BS01 MN 6.3.4.15 GO:0004077 ... O57883 N/A
    2336 2dti:B (2.2) BS01 MN 6.3.4.15 GO:0004077 ... O57883 N/A
    2337 2dtw:A (2.4) BS03 MN ? GO:0030246 ... O24313 17057334
    2338 2dtw:B (2.4) BS03 MN ? GO:0030246 ... O24313 17057334
    2339 2dtw:C (2.4) BS03 MN ? GO:0030246 ... O24313 17057334
    2340 2dtw:D (2.4) BS03 MN ? GO:0030246 ... O24313 17057334
    2341 2dty:A (2.65) BS01 MN ? GO:0030246 ... O24313 17057334
    2342 2dty:B (2.65) BS01 MN ? GO:0030246 ... O24313 17057334
    2343 2dty:C (2.65) BS01 MN ? GO:0030246 ... O24313 17057334
    2344 2dty:D (2.65) BS01 MN ? GO:0030246 ... O24313 17057334
    2345 2du0:A (2.7) BS03 MN ? GO:0030246 ... O24313 17057334
    2346 2du0:B (2.7) BS03 MN ? GO:0030246 ... O24313 17057334
    2347 2du0:C (2.7) BS03 MN ? GO:0030246 ... O24313 17057334
    2348 2du0:D (2.7) BS03 MN ? GO:0030246 ... O24313 17057334
    2349 2du1:A (2.6) BS03 MN ? GO:0030246 ... O24313 17057334
    2350 2du1:B (2.6) BS03 MN ? GO:0030246 ... O24313 17057334
    2351 2du1:C (2.6) BS03 MN ? GO:0030246 ... O24313 17057334
    2352 2du1:D (2.6) BS03 MN ? GO:0030246 ... O24313 17057334
    2353 2dv9:A (2.48) BS03 MN ? GO:0030246 ... P02872 17057347
    2354 2dv9:B (2.48) BS04 MN ? GO:0030246 ... P02872 17057347
    2355 2dv9:C (2.48) BS04 MN ? GO:0030246 ... P02872 17057347
    2356 2dv9:D (2.48) BS04 MN ? GO:0030246 ... P02872 17057347
    2357 2dva:A (2.2) BS04 MN ? GO:0030246 ... P02872 17057347
    2358 2dva:B (2.2) BS04 MN ? GO:0030246 ... P02872 17057347
    2359 2dva:C (2.2) BS04 MN ? GO:0030246 ... P02872 17057347
    2360 2dva:D (2.2) BS04 MN ? GO:0030246 ... P02872 17057347
    2361 2dvb:A (2.25) BS03 MN ? GO:0030246 ... P02872 17057347
    2362 2dvb:B (2.25) BS03 MN ? GO:0030246 ... P02872 17057347
    2363 2dvb:C (2.25) BS03 MN ? GO:0030246 ... P02872 17057347
    2364 2dvb:D (2.25) BS03 MN ? GO:0030246 ... P02872 17057347
    2365 2dvd:A (2.25) BS03 MN ? GO:0030246 ... P02872 17057347
    2366 2dvd:B (2.25) BS03 MN ? GO:0030246 ... P02872 17057347
    2367 2dvd:C (2.25) BS03 MN ? GO:0030246 ... P02872 17057347
    2368 2dvd:D (2.25) BS03 MN ? GO:0030246 ... P02872 17057347
    2369 2dvf:A (2.74) BS02 MN ? GO:0030246 ... P02872 17057347
    2370 2dvf:B (2.74) BS02 MN ? GO:0030246 ... P02872 17057347
    2371 2dvf:C (2.74) BS02 MN ? GO:0030246 ... P02872 17057347
    2372 2dvf:D (2.74) BS02 MN ? GO:0030246 ... P02872 17057347
    2373 2dvg:A (2.78) BS03 MN ? GO:0030246 ... P02872 17057347
    2374 2dvg:B (2.78) BS03 MN ? GO:0030246 ... P02872 17057347
    2375 2dvg:C (2.78) BS03 MN ? GO:0030246 ... P02872 17057347
    2376 2dvg:D (2.78) BS03 MN ? GO:0030246 ... P02872 17057347
    2377 2e51:A (2.5) BS01 MN ? GO:0030246 ... O24313 17510954
    2378 2e51:B (2.5) BS01 MN ? GO:0030246 ... O24313 17510954
    2379 2e51:C (2.5) BS01 MN ? GO:0030246 ... O24313 17510954
    2380 2e51:D (2.5) BS01 MN ? GO:0030246 ... O24313 17510954
    2381 2e53:A (2.4) BS03 MN ? GO:0030246 ... O24313 17510954
    2382 2e53:B (2.4) BS03 MN ? GO:0030246 ... O24313 17510954
    2383 2e53:C (2.4) BS03 MN ? GO:0030246 ... O24313 17510954
    2384 2e53:D (2.4) BS03 MN ? GO:0030246 ... O24313 17510954
    2385 2e6c:A (2.05) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    2386 2e6c:B (2.05) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    2387 2e6c:C (2.05) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    2388 2e6c:D (2.05) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    2389 2e6h:A (2.1) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    2390 2e6h:B (2.1) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    2391 2e6h:C (2.1) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    2392 2e6h:D (2.1) BS01 MN 3.1.3.5 GO:0000166 ... Q53W92 17561111
    2393 2e7q:A (2.75) BS03 MN ? GO:0030246 ... O24313 17510954
    2394 2e7q:B (2.75) BS03 MN ? GO:0030246 ... O24313 17510954
    2395 2e7q:C (2.75) BS03 MN ? GO:0030246 ... O24313 17510954
    2396 2e7q:D (2.75) BS02 MN ? GO:0030246 ... O24313 17510954
    2397 2e7t:A (2.65) BS01 MN ? GO:0030246 ... O24313 17510954
    2398 2e7t:B (2.65) BS01 MN ? GO:0030246 ... O24313 17510954
    2399 2e7t:C (2.65) BS02 MN ? GO:0030246 ... O24313 17510954
    2400 2e7t:D (2.65) BS01 MN ? GO:0030246 ... O24313 17510954
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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