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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 12805 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 1wkm:B (2.3) BS01 MN 3.4.11.18 GO:0004177 ... P56218 15628852
    1802 1wkm:B (2.3) BS02 MN 3.4.11.18 GO:0004177 ... P56218 15628852
    1803 1wl9:A (1.9) BS01 MN 3.4.11.9 GO:0004177 ... P15034 16229471
    1804 1wl9:A (1.9) BS02 MN 3.4.11.9 GO:0004177 ... P15034 16229471
    1805 1wlj:A (1.9) BS01 MN 3.1.13.1 GO:0000175 ... Q96AZ6 15527770
    1806 1wlj:A (1.9) BS02 MN 3.1.13.1 GO:0000175 ... Q96AZ6 15527770
    1807 1wog:A (1.8) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1808 1wog:A (1.8) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1809 1wog:B (1.8) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1810 1wog:B (1.8) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1811 1wog:C (1.8) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1812 1wog:C (1.8) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1813 1wog:D (1.8) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1814 1wog:D (1.8) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1815 1wog:E (1.8) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1816 1wog:E (1.8) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1817 1wog:F (1.8) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1818 1wog:F (1.8) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1819 1woi:A (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1820 1woi:A (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1821 1woi:B (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1822 1woi:B (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1823 1woi:C (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1824 1woi:C (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1825 1woi:D (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1826 1woi:D (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1827 1woi:E (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1828 1woi:E (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1829 1woi:F (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1830 1woi:F (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    1831 1wpn:A (1.3) BS01 MN 3.6.1.1 N/A P37487 15533045
    1832 1wpn:A (1.3) BS02 MN 3.6.1.1 N/A P37487 15533045
    1833 1wpn:B (1.3) BS01 MN 3.6.1.1 N/A P37487 15533045
    1834 1wpn:B (1.3) BS02 MN 3.6.1.1 N/A P37487 15533045
    1835 1wrn:A (2.3) BS01 MN ? GO:0003723 ... P10943 16192572
    1836 1wrn:B (2.3) BS01 MN ? GO:0003723 ... P10943 16192572
    1837 1wrn:C (2.3) BS02 MN ? GO:0003723 ... P10943 16192572
    1838 1wse:A (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    1839 1wse:B (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    1840 1wsf:A (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    1841 1wsf:B (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    1842 1wsf:D (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    1843 1wsg:A (2.2) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    1844 1wsg:D (2.2) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    1845 1wuv:A (2.3) BS01 MN ? GO:0030246 ... P14894 17683532
    1846 1wuv:D (2.3) BS01 MN ? GO:0030246 ... P14894 17683532
    1847 1wuv:G (2.3) BS01 MN ? GO:0030246 ... P14894 17683532
    1848 1wuv:J (2.3) BS01 MN ? GO:0030246 ... P14894 17683532
    1849 1wva:A (1.94) BS01 MN 3.5.3.1 GO:0000050 ... P05089 16141327
    1850 1wva:A (1.94) BS02 MN 3.5.3.1 GO:0000050 ... P05089 16141327
    1851 1wva:B (1.94) BS01 MN 3.5.3.1 GO:0000050 ... P05089 16141327
    1852 1wva:B (1.94) BS02 MN 3.5.3.1 GO:0000050 ... P05089 16141327
    1853 1wvb:A (2.3) BS01 MN 3.5.3.1 GO:0000050 ... P05089 N/A
    1854 1wvb:A (2.3) BS02 MN 3.5.3.1 GO:0000050 ... P05089 N/A
    1855 1wvb:B (2.3) BS01 MN 3.5.3.1 GO:0000050 ... P05089 N/A
    1856 1wvb:B (2.3) BS02 MN 3.5.3.1 GO:0000050 ... P05089 N/A
    1857 1x7n:A (1.89) BS01 MN 5.3.1.9 GO:0004347 ... P83194 15465052
    1858 1x7w:A (1.73) BS01 MN 1.2.4.4 GO:0003863 ... P12694 15576032
    1859 1x7x:A (2.1) BS01 MN 1.2.4.4 GO:0003863 ... P12694 15576032
    1860 1x7y:A (1.57) BS01 MN 1.2.4.4 GO:0003863 ... P12694 15576032
    1861 1x7z:A (1.72) BS01 MN 1.2.4.4 GO:0003863 ... P12694 15576032
    1862 1x80:A (2.0) BS01 MN 1.2.4.4 GO:0003863 ... P12694 15576032
    1863 1x83:A (1.8) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    1864 1x83:B (1.8) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    1865 1x84:A (1.78) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    1866 1x84:B (1.78) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    1867 1xdc:A (1.85) BS01 MN 1.15.1.1 GO:0004784 ... P04179 16150974
    1868 1xdc:B (1.85) BS01 MN 1.15.1.1 GO:0004784 ... P04179 16150974
    1869 1xhb:A (2.5) BS01 MN 2.4.1.41 N/A O08912 15486088
    1870 1xhv:A (2.5) BS05 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1871 1xhv:A (2.5) BS06 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1872 1xhv:B (2.5) BS05 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1873 1xhv:B (2.5) BS06 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1874 1xhv:C (2.5) BS05 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1875 1xhv:C (2.5) BS06 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1876 1xhv:C (2.5) BS07 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1877 1xhv:D (2.5) BS05 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1878 1xhv:D (2.5) BS06 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1879 1xhv:D (2.5) BS07 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1880 1xhv:D (2.5) BS08 MN 3.1.21.4 GO:0003677 ... P17743 15476804
    1881 1xib:A (1.6) BS01 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1882 1xib:A (1.6) BS02 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1883 1xic:A (1.6) BS02 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1884 1xic:A (1.6) BS03 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1885 1xid:A (1.7) BS01 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1886 1xid:A (1.7) BS02 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1887 1xie:A (1.7) BS02 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1888 1xie:A (1.7) BS03 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1889 1xif:A (1.6) BS02 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1890 1xif:A (1.6) BS03 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1891 1xig:A (1.7) BS02 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1892 1xig:A (1.7) BS03 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1893 1xih:A (1.7) BS02 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1894 1xii:A (1.7) BS02 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1895 1xii:A (1.7) BS03 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1896 1xij:A (1.7) BS01 MN 5.3.1.5 GO:0000287 ... P24300 15299449
    1897 1xil:A (1.53) BS01 MN 1.15.1.1 GO:0004784 ... P04179 16150974
    1898 1xil:B (1.53) BS01 MN 1.15.1.1 GO:0004784 ... P04179 16150974
    1899 1xis:A (1.6) BS01 MN 5.3.1.5 GO:0000287 ... P24300 2006134
    1900 1xis:A (1.6) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2006134
    1901 1xld:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1902 1xld:A (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1903 1xld:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1904 1xld:B (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1905 1xle:A (2.5) BS01 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1906 1xle:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1907 1xle:B (2.5) BS01 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1908 1xle:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1909 1xlf:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1910 1xlf:A (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1911 1xlf:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1912 1xlf:B (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1913 1xli:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1914 1xli:A (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1915 1xli:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1916 1xli:B (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1917 1xlj:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1918 1xlj:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1919 1xlk:A (2.5) BS01 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1920 1xlk:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1921 1xlk:B (2.5) BS01 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1922 1xlk:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    1923 1xmf:A (2.32) BS01 MN 1.14.13.25 GO:0004497 ... P22869 15610020
    1924 1xmf:A (2.32) BS02 MN 1.14.13.25 GO:0004497 ... P22869 15610020
    1925 1xmf:B (2.32) BS01 MN 1.14.13.25 GO:0004497 ... P22869 15610020
    1926 1xmf:B (2.32) BS02 MN 1.14.13.25 GO:0004497 ... P22869 15610020
    1927 1xnz:A (1.52) BS01 MN 3.4.11.18 GO:0004177 ... P0AE18 15506752
    1928 1xnz:A (1.52) BS02 MN 3.4.11.18 GO:0004177 ... P0AE18 15506752
    1929 1xqn:A (2.5) BS01 MN ? N/A P02866 15546977
    1930 1xre:A (1.8) BS01 MN 1.15.1.1 GO:0004784 ... Q81JK8 16511113
    1931 1xre:B (1.8) BS01 MN 1.15.1.1 GO:0004784 ... Q81JK8 16511113
    1932 1xuq:A (1.8) BS01 MN 1.15.1.1 GO:0004784 ... Q81LW0 16511113
    1933 1xuq:B (1.8) BS01 MN 1.15.1.1 GO:0004784 ... Q81LW0 16511113
    1934 1xuu:A (1.9) BS01 MN ? GO:0016051 ... Q57265 15516336
    1935 1xuz:A (2.2) BS02 MN ? GO:0016051 ... Q57265 15516336
    1936 1xvl:A (2.9) BS01 MN ? GO:0007155 ... Q79EF9 15843026
    1937 1xvl:B (2.9) BS01 MN ? GO:0007155 ... Q79EF9 15843026
    1938 1xvl:C (2.9) BS01 MN ? GO:0007155 ... Q79EF9 15843026
    1939 1xzw:A (2.5) BS02 MN 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    1940 1xzw:B (2.5) BS02 MN 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    1941 1y63:A (1.7) BS01 MN 2.7.4.3 GO:0003723 ... Q4Q7A6 N/A
    1942 1y63:A (1.7) BS02 MN 2.7.4.3 GO:0003723 ... Q4Q7A6 N/A
    1943 1y63:A (1.7) BS03 MN 2.7.4.3 GO:0003723 ... Q4Q7A6 N/A
    1944 1y63:A (1.7) BS04 MN 2.7.4.3 GO:0003723 ... Q4Q7A6 N/A
    1945 1y63:A (1.7) BS05 MN 2.7.4.3 GO:0003723 ... Q4Q7A6 N/A
    1946 1ybu:A (2.4) BS01 MN 3.1.1.-
    4.6.1.1    		 GO:0009190 ... O07732 15678099
    1947 1ybu:D (2.4) BS01 MN 3.1.1.-
    4.6.1.1    		 GO:0009190 ... O07732 15678099
    1948 1yd0:A (1.5) BS01 MN ? GO:0006289 ... Q9WYA3 15692561
    1949 1yd2:A (1.6) BS01 MN ? GO:0006289 ... Q9WYA3 15692561
    1950 1yd3:A (1.6) BS01 MN ? GO:0006289 ... Q9WYA3 15692561
    1951 1yd4:A (1.9) BS01 MN ? GO:0006289 ... Q9WYA3 15692561
    1952 1yd4:A (1.9) BS02 MN ? GO:0006289 ... Q9WYA3 15692561
    1953 1yd5:A (1.8) BS01 MN ? GO:0006289 ... Q9WYA3 15692561
    1954 1ylh:A (1.7) BS01 MN 4.1.1.49 GO:0004611 ... A6VKV4 15983413
    1955 1yny:A (2.3) BS01 MN 3.5.2.2 GO:0004157 ... Q5DLU2 15733920
    1956 1yny:A (2.3) BS02 MN 3.5.2.2 GO:0004157 ... Q5DLU2 15733920
    1957 1yny:B (2.3) BS01 MN 3.5.2.2 GO:0004157 ... Q5DLU2 15733920
    1958 1yny:B (2.3) BS02 MN 3.5.2.2 GO:0004157 ... Q5DLU2 15733920
    1959 1ypp:A (2.4) BS01 MN 3.6.1.1 GO:0000287 ... P00817 8706712
    1960 1ypp:A (2.4) BS02 MN 3.6.1.1 GO:0000287 ... P00817 8706712
    1961 1ypp:B (2.4) BS01 MN 3.6.1.1 GO:0000287 ... P00817 8706712
    1962 1ypp:B (2.4) BS02 MN 3.6.1.1 GO:0000287 ... P00817 8706712
    1963 1yro:B (1.9) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 15736931
    1964 1yro:D (1.9) BS02 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 15736931
    1965 1yst:L (3.0) BS05 MN ? GO:0009772 ... P0C0Y8 15299304
    1966 1yst:M (3.0) BS03 MN ? GO:0009772 ... P0C0Y9 15299304
    1967 1ytm:A (2.2) BS01 MN 4.1.1.49 GO:0004611 ... O09460 15890557
    1968 1ytm:B (2.2) BS01 MN 4.1.1.49 GO:0004611 ... O09460 15890557
    1969 1yw7:A (1.85) BS01 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    1970 1yw7:A (1.85) BS02 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    1971 1yw8:A (2.65) BS01 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    1972 1yw8:A (2.65) BS02 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    1973 1yw9:A (1.64) BS01 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    1974 1yw9:A (1.64) BS02 MN 3.4.11.18 GO:0006508 ... P50579 16789740
    1975 1yyd:A (1.45) BS04 MN 1.11.1.13 GO:0000302 ... Q02567 15850380
    1976 1z25:A (2.7) BS01 MN 3.1.24.- GO:0003676 ... Q8U3D2 15800637
    1977 1z2w:A (2.0) BS01 MN ? GO:0005515 ... Q9QZ88 15965486
    1978 1z2w:A (2.0) BS02 MN ? GO:0005515 ... Q9QZ88 15965486
    1979 1z2w:B (2.0) BS01 MN ? GO:0005515 ... Q9QZ88 15965486
    1980 1z2w:B (2.0) BS02 MN ? GO:0005515 ... Q9QZ88 15965486
    1981 1z9j:B (4.5) BS04 MN ? GO:0009772 ... P0C0Y9 15895982
    1982 1za0:A (2.0) BS01 MN 1.14.19.- GO:0005515 ... P9WNZ5 15929999
    1983 1zao:A (1.84) BS01 MN 2.7.11.1 GO:0004672 ... O30245 15943813
    1984 1zao:A (1.84) BS02 MN 2.7.11.1 GO:0004672 ... O30245 15943813
    1985 1zar:A (1.75) BS01 MN 2.7.11.1 GO:0004672 ... O30245 15943813
    1986 1zco:B (2.25) BS01 MN 2.5.1.54 GO:0003849 ... Q8U0A9 16142893
    1987 1zct:A (2.6) BS01 MN 2.4.1.186 GO:0016757 ... P13280 15849187
    1988 1zct:B (2.6) BS01 MN 2.4.1.186 GO:0016757 ... P13280 15849187
    1989 1zdf:A (2.45) BS01 MN 2.4.1.186 GO:0005737 ... P13280 15849187
    1990 1zdg:A (2.3) BS01 MN 2.4.1.186 GO:0005737 ... P13280 15849187
    1991 1zdm:A (2.4) BS01 MN ? GO:0000156 ... P0AE67 15741343
    1992 1zdm:B (2.4) BS01 MN ? GO:0000156 ... P0AE67 15741343
    1993 1zi1:A (1.57) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    1994 1zj2:A (1.69) BS04 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    1995 1zjo:A (1.64) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    1996 1zjp:A (1.59) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 16326711
    1997 1zm8:A (1.9) BS01 MN 3.1.30.- GO:0003676 ... P38446 15897201
    1998 1zm8:A (1.9) BS02 MN 3.1.30.- GO:0003676 ... P38446 15897201
    1999 1zop:A (2.0) BS01 MN ? N/A P20701 8805579
    2000 1zop:B (2.0) BS01 MN ? N/A P20701 8805579
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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