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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ddr:A (2.05) BS02 MMV 1.5.1.3 GO:0000900 ... P00374 23035243 MOAD: Ki=2841nM
    2 4dp3:A (2.4) BS01 MMV 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 23035243 MOAD: Ki=0.54nM
    3 4dp3:B (2.4) BS01 MMV 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 23035243 MOAD: Ki=0.54nM
    4 5u26:A (1.85) BS01 MMV 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    5 5ujf:A (2.3) BS01 MMV 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    6 6cxm:A (2.65) BS02 MMV 1.5.1.3 GO:0000166 ... I7FC10 N/A
    7 6cxm:B (2.65) BS02 MMV 1.5.1.3 GO:0000166 ... I7FC10 N/A
    8 6e4e:A (1.9) BS02 MMV 1.5.1.3 GO:0004146 ... P0A017 N/A
    9 6uww:A (0.92) BS01 MMV 1.5.1.3 GO:0000166 ... A0PQG8 N/A
    10 7k62:A (2.05) BS02 MMV 1.5.1.3 GO:0000166 ... A0A653EQ34 N/A
    11 7k62:B (2.05) BS02 MMV 1.5.1.3 GO:0000166 ... A0A653EQ34 N/A
    12 7k6c:A (2.0) BS02 MMV 1.5.1.3 GO:0000166 ... B1MD46 N/A
    13 7k6c:B (2.0) BS02 MMV 1.5.1.3 GO:0000166 ... B1MD46 N/A
    14 7k6c:C (2.0) BS02 MMV 1.5.1.3 GO:0000166 ... B1MD46 N/A
    15 7k6c:D (2.0) BS02 MMV 1.5.1.3 GO:0000166 ... B1MD46 N/A
    16 7k6c:E (2.0) BS03 MMV 1.5.1.3 GO:0000166 ... B1MD46 N/A
    17 7k6c:F (2.0) BS02 MMV 1.5.1.3 GO:0000166 ... B1MD46 N/A
    18 7k6c:G (2.0) BS02 MMV 1.5.1.3 GO:0000166 ... B1MD46 N/A
    19 7tj3:A (1.55) BS02 MMV 1.5.1.3 GO:0000166 ... B2FPG1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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