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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2csc:A (1.7) BS02 MLT 2.3.3.1 GO:0004108 ... P23007 2043640
    2 4csc:A (1.9) BS01 MLT 2.3.3.1 GO:0004108 ... P23007 2043640
    3 4kcu:A (2.35) BS02 MLT 2.7.1.40 GO:0000287 ... P30615 24328825
    4 4kcu:B (2.35) BS02 MLT 2.7.1.40 GO:0000287 ... P30615 24328825
    5 4uhe:A (1.16) BS01 MLT 3.1.1.1 GO:0003824 ... A0A0M3KKY6 26011036
    6 6hke:A (2.11) BS01 MLT ? N/A Q6N446 30471256 MOAD: Kd=21nM
    PDBbind: -logKd/Ki=7.68, Kd=21nM
    7 6hke:B (2.11) BS01 MLT ? N/A Q6N446 30471256 MOAD: Kd=21nM
    8 6hke:C (2.11) BS01 MLT ? N/A Q6N446 30471256 MOAD: Kd=21nM
    9 6lpq:A (2.8) BS03 MLT 1.1.99.39 GO:0003824 ... Q8N465 33431826
    10 6lpq:B (2.8) BS03 MLT 1.1.99.39 GO:0003824 ... Q8N465 33431826
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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