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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1av6:A (2.8) BS02 MGT 2.1.1.57 GO:0003746 ... P07617 9660928
    2 1p39:A (2.0) BS02 MGT 2.1.1.57 GO:0003723 ... P07617 9145102
    3 2a8t:A (2.1) BS03 MGT 3.6.1.62
    3.6.1.64    		 GO:0000166 ... Q6TEC1 16472752
    4 2a8t:B (2.1) BS03 MGT 3.6.1.62
    3.6.1.64    		 GO:0000166 ... Q6TEC1 16472752
    5 2jgb:A (1.7) BS02 MGT ? GO:0003723 ... O60573 17368478
    6 2px8:A (2.2) BS01 MGT 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P05769 17622627
    7 2px8:B (2.2) BS01 MGT 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P05769 17622627
    8 2px8:B (2.2) BS02 MGT 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P05769 17622627
    9 2vqz:A (2.3) BS01 MGT ? N/A P31345 18454157 MOAD: Kd=177uM
    10 2vqz:B (2.3) BS01 MGT ? N/A P31345 18454157 MOAD: Kd=177uM
    11 2vqz:D (2.3) BS01 MGT ? N/A P31345 18454157 MOAD: Kd=177uM
    12 2vqz:E (2.3) BS01 MGT ? N/A P31345 18454157 MOAD: Kd=177uM
    13 2vqz:F (2.3) BS01 MGT ? N/A P31345 18454157 MOAD: Kd=177uM
    14 3wi1:A (1.931) BS01 MGT ? N/A P03428 24312396
    15 4cb4:A (1.6) BS01 MGT ? N/A Q2LG68 24134208
    16 4eqk:A (1.95) BS01 MGT ? N/A Q91MB1 23436652
    17 4es5:A (1.8) BS01 MGT ? N/A Q4FAU9 23436652
    18 4es5:B (1.8) BS01 MGT ? N/A Q4FAU9 23436652
    19 4es5:C (1.8) BS01 MGT ? N/A Q4FAU9 23436652
    20 4es5:D (1.8) BS01 MGT ? N/A Q4FAU9 23436652
    21 4n48:A (2.704) BS03 MGT 2.1.1.57 GO:0008168 ... Q8N1G2 24402442
    22 4n48:B (2.704) BS03 MGT 2.1.1.57 GO:0008168 ... Q8N1G2 24402442
    23 4n49:A (1.9) BS02 MGT 2.1.1.57 GO:0008168 ... Q8N1G2 24402442
    24 4nce:A (2.3) BS01 MGT ? N/A P31345 25019388
    25 4tqb:A (1.59) BS01 MGT ? GO:0003723 ... P06730 25049413
    26 4tqb:B (1.59) BS01 MGT ? GO:0003723 ... P06730 25049413
    27 4uec:A (2.4) BS01 MGT ? GO:0003723 ... P48598 25702871
    28 4uec:C (2.4) BS01 MGT ? GO:0003723 ... P48598 25702871
    29 5efa:A (1.9) BS01 MGT ? N/A Q9QLL6 26559973 MOAD: Kd=14.7uM
    PDBbind: -logKd/Ki=4.83, Kd=14.7uM
    30 5eg7:A (1.4) BS01 MGT ? N/A G3LZH2 26894672
    31 5fmm:A (2.4) BS01 MGT ? GO:0003723 ... Q6DNN3 26711008
    32 5fmq:A (3.1) BS01 MGT ? GO:0003723 ... Q6DNN3 26711008
    33 5h3t:A (2.571) BS01 MGT ? N/A Q8TEQ6 27834343
    34 5h3t:B (2.571) BS01 MGT ? N/A Q8TEQ6 27834343
    35 5h3t:C (2.571) BS01 MGT ? N/A Q8TEQ6 27834343
    36 5h3t:D (2.571) BS01 MGT ? N/A Q8TEQ6 27834343
    37 5muy:A (1.99) BS01 MGT 2.7.7.48 N/A J7HBG8 28505175
    38 5muy:B (1.99) BS01 MGT 2.7.7.48 N/A J7HBG8 28505175
    39 5oo6:B (2.8) BS02 MGT ? GO:0000184 ... P52298 29101316
    40 5oo6:E (2.8) BS02 MGT ? GO:0000184 ... P52298 29101316
    41 5oo6:H (2.8) BS02 MGT ? GO:0000184 ... P52298 29101316
    42 5oo6:K (2.8) BS02 MGT ? GO:0000184 ... P52298 29101316
    43 5oo6:N (2.8) BS02 MGT ? GO:0000184 ... P52298 29101316
    44 5oo6:Q (2.8) BS02 MGT ? GO:0000184 ... P52298 29101316
    45 5oo6:T (2.8) BS02 MGT ? GO:0000184 ... P52298 29101316
    46 5oo6:W (2.8) BS02 MGT ? GO:0000184 ... P52298 29101316
    47 5oob:B (2.79) BS02 MGT ? GO:0000184 ... P52298 29101316
    48 5oob:D (2.79) BS02 MGT ? GO:0000184 ... P52298 29101316
    49 5oob:G (2.79) BS01 MGT ? GO:0000184 ... P52298 29101316
    50 5oob:J (2.79) BS02 MGT ? GO:0000184 ... P52298 29101316
    51 5v4r:A (1.77) BS01 MGT ? GO:0000339 ... Q6PKG0 28379136
    52 5v4r:B (1.77) BS01 MGT ? GO:0000339 ... Q6PKG0 28379136
    53 5v87:A (1.692) BS01 MGT ? GO:0000339 ... Q6PKG0 28379136
    54 5zjz:A (1.67) BS02 MGT ? GO:0003723 ... P06730 30881679
    55 5zk5:A (2.25) BS02 MGT ? GO:0003723 ... P06730 30881679
    56 5zk7:A (2.12) BS03 MGT ? GO:0003723 ... P06730 30881679
    57 5zk7:B (2.12) BS03 MGT ? GO:0003723 ... P06730 30881679
    58 6qhg:A (1.483) BS01 MGT 2.7.7.48
    3.1.-.-    		 N/A A2SZS3 31136637 MOAD: Kd=737uM
    PDBbind: -logKd/Ki=3.13, Kd=737uM
    59 6qhg:B (1.483) BS01 MGT 2.7.7.48
    3.1.-.-    		 N/A A2SZS3 31136637 MOAD: Kd=737uM
    60 8p4f:O (4.0) BS02 MGT 2.1.1.57 GO:0003676 ... Q8N1G2 37369200
    61 8pmp:B (3.43) BS02 MGT ? GO:0000184 ... P52298 38175753
    62 8pnt:B (3.46) BS01 MGT ? GO:0000184 ... P52298 38175753
    63 9f2r:C (1.959) BS02 MGT N/A N/A H6QM90 N/A
    64 9f37:C (1.905) BS02 MGT N/A N/A H6QM90 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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