Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ap8:A (-1.00) BS01 M7G ? GO:0000184 ... P07260 9302999
    2 1ej1:A (2.2) BS01 M7G ? GO:0003723 ... P63073 9200613
    3 1ej1:B (2.2) BS01 M7G ? GO:0003723 ... P63073 9200613
    4 1ej4:A (2.25) BS02 M7G ? GO:0003723 ... P63073 10394359
    5 1ejh:A (2.2) BS02 M7G ? GO:0003723 ... P63073 10394359
    6 1ejh:B (2.2) BS02 M7G ? GO:0003723 ... P63073 10394359
    7 1ejh:C (2.2) BS02 M7G ? GO:0003723 ... P63073 10394359
    8 1ejh:D (2.2) BS02 M7G ? GO:0003723 ... P63073 10394359
    9 1jtf:A (2.6) BS02 M7G 2.1.1.57 GO:0003723 ... P07617 12056899
    10 1rf8:A (-1.00) BS03 M7G ? GO:0000184 ... P07260 14675538
    11 1v39:A (1.8) BS02 M7G 2.1.1.57 GO:0003723 ... P07617 9145102
    12 1xmm:A (2.5) BS01 M7G 3.6.1.59 GO:0000288 ... Q96C86 15769464
    13 1xmm:B (2.5) BS02 M7G 3.6.1.59 GO:0000288 ... Q96C86 15769464
    14 1xmm:D (2.5) BS01 M7G 3.6.1.59 GO:0000288 ... Q96C86 15769464
    15 2idv:A (2.3) BS01 M7G ? GO:0003723 ... P29557 17322339
    16 2jh8:A (3.22) BS01 M7G ? GO:0019028 ... Q65751 17417654
    17 2vp3:A (1.95) BS02 M7G 2.1.1.57 GO:0003723 ... P07617 9145102
    18 3m93:A (2.9) BS02 M7G ? GO:0003723 ... Q6PKX2 21965542 PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    19 3q4p:A (1.8) BS01 M7G 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    20 4b6u:A (-1.00) BS01 M7G ? GO:0003723 ... Q9DBB5 23431134 PDBbind: -logKd/Ki=5.11, Kd=7.7uM
    21 4emf:A (1.77) BS01 M7G 3.2.2.22 GO:0000166 ... D9J2T9 23280611 PDBbind: -logKd/Ki=7.08, Kd=83.9nM
    22 4or4:A (2.21) BS01 M7G ? N/A A0A0J9X1Y8 25691568 PDBbind: -logKd/Ki=4.57, Kd=26.8uM
    23 4or4:B (2.21) BS01 M7G ? N/A A0A0J9X1Y8 25691568
    24 4tqc:A (1.8) BS01 M7G ? GO:0003723 ... P06730 25049413
    25 4tqc:B (1.8) BS01 M7G ? GO:0003723 ... P06730 25049413
    26 5bv3:A (2.25) BS01 M7G 3.6.1.59 GO:0000288 ... Q06151 26258763 MOAD: Kd=68nM
    PDBbind: -logKd/Ki=7.17, Kd=68nM
    27 5bv3:C (2.25) BS01 M7G 3.6.1.59 GO:0000288 ... Q06151 26258763 MOAD: Kd=68nM
    28 5dto:A (2.603) BS06 M7G 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 26578813
    29 5f98:A (3.28) BS03 M7G 3.6.4.13 GO:0003676 ... O95786 26733676
    30 5f98:C (3.28) BS03 M7G 3.6.4.13 GO:0003676 ... O95786 26733676
    31 5f98:E (3.28) BS03 M7G 3.6.4.13 GO:0003676 ... O95786 26733676
    32 5f98:G (3.28) BS03 M7G 3.6.4.13 GO:0003676 ... O95786 26733676
    33 5f98:I (3.28) BS03 M7G 3.6.4.13 GO:0003676 ... O95786 26733676
    34 5h1m:A (2.492) BS01 M7G ? N/A Q8TEQ6 27881601
    35 5kqs:A (1.5) BS01 M7G 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... A0A024B7W1 27633330
    36 5lop:A (3.5) BS03 M7G ? GO:0000184 ... Q6CIU1 27694841
    37 5me6:A (2.9) BS01 M7G ? GO:0003723 ... Q00LS8 28522457
    38 5me6:D (2.9) BS01 M7G ? GO:0003723 ... Q00LS8 28522457
    39 6irz:A (2.0) BS02 M7G 2.1.1.62 GO:0016422 ... A0A0R4IKJ1 30467178
    40 6is0:A (1.8) BS03 M7G 2.1.1.62 GO:0016422 ... A0A0R4IKJ1 30467178
    41 6trq:A (2.944) BS03 M7G 3.6.1.59 GO:0000288 ... Q06151 32723815
    42 6trq:C (2.944) BS03 M7G 3.6.1.59 GO:0000288 ... Q06151 32723815
    43 6trq:D (2.944) BS02 M7G 3.6.1.59 GO:0000288 ... Q06151 32723815
    44 8srr:B (3.22) BS01 M7G N/A N/A P52298 N/A
    45 8suy:B (3.38) BS01 M7G N/A N/A P52298 N/A
    46 8sx4:B (1.986) BS01 M7G ? GO:0003723 ... P06730 37471629
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218