Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c39:A (1.85) BS02 M6P ? GO:0005768 ... P11456 10514470
    2 1c39:B (1.85) BS02 M6P ? GO:0005768 ... P11456 10514470
    3 1m6p:A (1.8) BS02 M6P ? GO:0005768 ... P11456 9604938 MOAD: Kd=8uM
    PDBbind: -logKd/Ki=5.10, Kd=8uM
    4 1m6p:B (1.8) BS01 M6P ? GO:0005768 ... P11456 9604938 MOAD: Kd=8uM
    5 1pcm:X (1.9) BS02 M6P 5.4.2.2
    5.4.2.8    		 GO:0000287 ... P26276 14725765
    6 1syo:A (2.2) BS01 M6P ? GO:0005537 ... P08169 15169779 MOAD: Kd~1nM
    PDBbind: -logKd/Ki=9.00, Kd~1nM
    7 1syo:B (2.2) BS01 M6P ? GO:0005537 ... P08169 15169779 MOAD: Kd~1nM
    PDBbind: -logKd/Ki=9.00, Kd~1nM
    8 1sz0:A (2.1) BS01 M6P ? GO:0005537 ... P08169 15169779 MOAD: Kd~1nM
    PDBbind: -logKd/Ki=9.00, Kd~1nM
    9 1sz0:B (2.1) BS01 M6P ? GO:0005537 ... P08169 15169779 MOAD: Kd~1nM
    PDBbind: -logKd/Ki=9.00, Kd~1nM
    10 2gc3:A (2.1) BS02 M6P 5.3.1.9 GO:0004347 ... P83194 16580686
    11 2gc3:B (2.1) BS02 M6P 5.3.1.9 GO:0004347 ... P83194 16580686
    12 2rl9:A (2.4) BS02 M6P ? GO:0005768 ... P11456 18272523
    13 2rl9:B (2.4) BS02 M6P ? GO:0005768 ... P11456 18272523
    14 3c0o:A (2.5) BS01 M6P ? GO:0005576 ... P09167 23912165
    15 3c0o:B (2.5) BS01 M6P ? GO:0005576 ... P09167 23912165
    16 4r73:A (1.6) BS02 M6P ? GO:0015888 ... A3N294 26295949 MOAD: Kd=960nM
    17 4r73:B (1.6) BS02 M6P ? GO:0015888 ... A3N294 26295949 MOAD: Kd=960nM
    18 4rzc:A (2.723) BS01 M6P N/A N/A N/A 26503547
    19 4rzc:B (2.723) BS01 M6P N/A N/A N/A 26503547
    20 4rzc:C (2.723) BS01 M6P N/A N/A N/A 26503547
    21 4rzc:E (2.723) BS01 M6P N/A N/A N/A 26503547
    22 4rzc:H (2.723) BS01 M6P N/A N/A N/A 26503547
    23 4zev:A (1.8) BS02 M6P 3.8.1.- GO:0003824 ... Q8IJ74 26327372
    24 6np8:A (1.41) BS01 M6P N/A GO:0000287 ... N/A 31041362
    25 6npx:A (1.42) BS02 M6P N/A GO:0000287 ... N/A 31041362
    26 6pki:A (2.293) BS01 M6P ? N/A F1QSF9 32109365
    27 6pki:B (2.293) BS01 M6P ? N/A F1QSF9 32109365
    28 6pki:C (2.293) BS01 M6P ? N/A F1QSF9 32109365
    29 6pki:C (2.293) BS02 M6P ? N/A F1QSF9 32109365
    30 6pki:D (2.293) BS01 M6P ? N/A F1QSF9 32109365
    31 6pku:A (1.949) BS01 M6P ? N/A H0VTT5 32109365
    32 6pku:B (1.949) BS01 M6P ? N/A H0VTT5 32109365
    33 6pku:C (1.949) BS01 M6P ? N/A H0VTT5 32109365
    34 6pku:D (1.949) BS01 M6P ? N/A H0VTT5 32109365
    35 7kma:A (2.7) BS01 M6P ? GO:0002183 ... Q14232 34103529
    36 7kma:B (2.7) BS01 M6P ? GO:0002183 ... Q14232 34103529
    37 7kma:C (2.7) BS01 M6P ? GO:0002183 ... Q14232 34103529
    38 7kma:D (2.7) BS01 M6P ? GO:0002183 ... Q14232 34103529
    39 7kma:E (2.7) BS01 M6P ? GO:0002183 ... Q14232 34103529
    40 7kma:F (2.7) BS01 M6P ? GO:0002183 ... Q14232 34103529
    41 7kma:G (2.7) BS01 M6P ? GO:0002183 ... Q14232 34103529
    42 7kma:H (2.7) BS01 M6P ? GO:0002183 ... Q14232 34103529
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218