Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 679 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 7lcf:D (2.69) BS01 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    602 7lcf:D (2.69) BS02 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    603 7lcf:E (2.69) BS01 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    604 7lcf:E (2.69) BS02 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    605 7lcf:F (2.69) BS01 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    606 7lcf:F (2.69) BS02 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    607 7lcf:G (2.69) BS01 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    608 7lcf:H (2.69) BS01 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    609 7lcf:I (2.69) BS01 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    610 7lcf:I (2.69) BS02 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    611 7lcf:J (2.69) BS01 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    612 7lcf:K (2.69) BS01 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    613 7lcf:L (2.69) BS01 LYS 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    614 7lvl:A (2.01) BS01 LYS 4.3.3.7 GO:0005737 ... A0A0F4VK59 N/A
    615 7lvl:B (2.01) BS01 LYS 4.3.3.7 GO:0005737 ... A0A0F4VK59 N/A
    616 7lvl:B (2.01) BS02 LYS 4.3.3.7 GO:0005737 ... A0A0F4VK59 N/A
    617 7lvl:C (2.01) BS01 LYS 4.3.3.7 GO:0005737 ... A0A0F4VK59 N/A
    618 7lvl:C (2.01) BS02 LYS 4.3.3.7 GO:0005737 ... A0A0F4VK59 N/A
    619 7lvl:D (2.01) BS01 LYS 4.3.3.7 GO:0005737 ... A0A0F4VK59 N/A
    620 7lvl:D (2.01) BS02 LYS 4.3.3.7 GO:0005737 ... A0A0F4VK59 N/A
    621 7lvl:E (2.01) BS01 LYS 4.3.3.7 GO:0005737 ... A0A0F4VK59 N/A
    622 7lvl:E (2.01) BS02 LYS 4.3.3.7 GO:0005737 ... A0A0F4VK59 N/A
    623 7lvl:F (2.01) BS01 LYS 4.3.3.7 GO:0005737 ... A0A0F4VK59 N/A
    624 7qh8:A (1.92) BS01 LYS 6.1.1.6 GO:0000049 ... P9WFU9 36220877
    625 7qhn:A (2.58) BS01 LYS 6.1.1.6 GO:0000049 ... P9WFU9 36220877
    626 7qi8:A (2.2) BS01 LYS 6.1.1.6 GO:0000049 ... P9WFU9 36220877
    627 7u6j:A (1.9) BS01 LYS ? N/A A0A1H0BKU7 36913566
    628 7u6j:B (1.9) BS01 LYS ? N/A A0A1H0BKU7 36913566
    629 7u6j:C (1.9) BS01 LYS ? N/A A0A1H0BKU7 36913566
    630 7u6j:D (1.9) BS01 LYS ? N/A A0A1H0BKU7 36913566
    631 7u6j:E (1.9) BS01 LYS ? N/A A0A1H0BKU7 36913566
    632 7u6j:F (1.9) BS01 LYS ? N/A A0A1H0BKU7 36913566
    633 7u6j:G (1.9) BS01 LYS ? N/A A0A1H0BKU7 36913566
    634 7u6j:H (1.9) BS01 LYS ? N/A A0A1H0BKU7 36913566
    635 7x7j:A (1.4) BS02 LYS N/A N/A N/A N/A
    636 7x7j:B (1.4) BS02 LYS N/A N/A N/A N/A
    637 7y4r:B (2.51) BS01 LYS ? GO:0016491 ... Q9I5X1 N/A
    638 7y4r:D (2.51) BS01 LYS ? GO:0016491 ... Q9I5X1 N/A
    639 7zkt:A (2.06) BS02 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    640 7zkt:A (2.06) BS03 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    641 7zkt:B (2.06) BS01 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    642 7zkt:B (2.06) BS02 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    643 7zkt:C (2.06) BS02 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    644 7zkt:C (2.06) BS03 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    645 7zkt:D (2.06) BS01 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    646 7zkt:D (2.06) BS02 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    647 7zkt:E (2.06) BS02 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    648 7zkt:E (2.06) BS03 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    649 7zkt:F (2.06) BS01 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    650 7zkt:F (2.06) BS02 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    651 7zkt:G (2.06) BS02 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    652 7zkt:G (2.06) BS03 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    653 7zkt:H (2.06) BS01 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    654 7zkt:H (2.06) BS02 LYS ? GO:0008080 ... A0A2K1KKM6 36786691
    655 7zog:A (1.8) BS02 LYS 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    656 7zog:B (1.8) BS02 LYS 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    657 7zog:C (1.8) BS02 LYS 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    658 7zog:D (1.8) BS02 LYS 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    659 8cib:D (1.78) BS01 LYS 3.5.2.19 GO:0016787 ... A0A072ZIR4 37250041
    660 8cib:F (1.78) BS01 LYS 3.5.2.19 GO:0016787 ... A0A072ZIR4 37250041
    661 8g98:A (2.49) BS01 LYS ? N/A A0A5K6CNB8 37752201
    662 8gs1:B (2.7) BS01 LYS ? N/A B4XYC1 37043819
    663 8j1c:B (2.2) BS02 LYS ? GO:0000166 ... A0A7Y0ZV07 37524275
    664 8k9s:A (2.35) BS01 LYS N/A N/A A0A024X378 38890421
    665 8k9s:B (2.35) BS01 LYS N/A N/A A0A024X378 38890421
    666 8k9u:A (2.83) BS01 LYS N/A N/A A0A024X378 38890421
    667 8k9u:B (2.83) BS01 LYS N/A N/A A0A024X378 38890421
    668 8k9v:A (1.92) BS01 LYS N/A N/A A0A024X378 38890421
    669 8k9v:B (1.92) BS01 LYS N/A N/A A0A024X378 38890421
    670 8sab:A (1.6) BS01 LYS 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    671 8sab:A (1.6) BS04 LYS 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    672 8sab:B (1.6) BS01 LYS 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    673 8sab:B (1.6) BS02 LYS 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    674 8tln:E (1.6) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 1445869
    675 8wx4:A (3.12) BS01 LYS ? GO:0005290 ... Q8N697 N/A
    676 8wx4:B (3.12) BS01 LYS ? GO:0005290 ... Q8N697 N/A
    677 8zm4:A (1.4) BS07 LYS 3.4.24.27 N/A P00800 N/A
    678 8zm5:A (1.4) BS02 LYS 3.4.24.27 N/A P00800 N/A
    679 8zm6:A (1.4) BS02 LYS 3.4.24.27 N/A P00800 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218