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BioLiP
Download all results in tab-seperated text for 97 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lgh:A (2.4) BS03 LYC ? GO:0005886 ... P97253 8736556
    2 1lgh:B (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    3 1lgh:D (2.4) BS01 LYC ? GO:0005886 ... P97253 8736556
    4 1lgh:D (2.4) BS04 LYC ? GO:0005886 ... P97253 8736556
    5 1lgh:E (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    6 1lgh:G (2.4) BS03 LYC ? GO:0005886 ... P97253 8736556
    7 1lgh:H (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    8 1lgh:J (2.4) BS01 LYC ? GO:0005886 ... P97253 8736556
    9 1lgh:J (2.4) BS04 LYC ? GO:0005886 ... P97253 8736556
    10 1lgh:K (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    11 6q53:A (3.701) BS03 LYC N/A GO:0016020 ... N/A 30543422
    12 6q53:B (3.701) BS03 LYC ? GO:0005886 ... W8L932 30543422
    13 6q53:D (3.701) BS01 LYC N/A GO:0016020 ... N/A 30543422
    14 6q53:D (3.701) BS04 LYC N/A GO:0016020 ... N/A 30543422
    15 6q53:E (3.701) BS04 LYC ? GO:0005886 ... W8L932 30543422
    16 7qhm:B (2.8) BS05 LYC 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    17 7qhm:I (2.8) BS01 LYC ? GO:0005886 ... Q8NP09 35087070
    18 7qhm:O (2.8) BS07 LYC 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    19 7qhm:V (2.8) BS01 LYC ? GO:0005886 ... Q8NP09 35087070
    20 7qho:B (3.1) BS05 LYC 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    21 7qho:I (3.1) BS01 LYC ? GO:0005886 ... Q8NP09 35087070
    22 7qho:O (3.1) BS07 LYC 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    23 7qho:V (3.1) BS01 LYC ? GO:0005886 ... Q8NP09 35087070
    24 7tuw:A (8.2) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    25 7tuw:C (8.2) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    26 7tuw:D (8.2) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    27 7tuw:G (8.2) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    28 7tuw:I (8.2) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    29 7tuw:K (8.2) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    30 7tuw:M (8.2) BS01 LYC ? GO:0005886 ... P97253 37399405
    31 7tuw:O (8.2) BS01 LYC ? GO:0005886 ... P97253 37399405
    32 7tuw:Q (8.2) BS01 LYC ? GO:0005886 ... P97253 37399405
    33 7tuw:S (8.2) BS01 LYC ? GO:0005886 ... P97253 37399405
    34 7tuw:U (8.2) BS01 LYC ? GO:0005886 ... P97253 37399405
    35 7tuw:W (8.2) BS01 LYC ? GO:0005886 ... P97253 37399405
    36 7tuw:Y (8.2) BS01 LYC ? GO:0005886 ... P97253 37399405
    37 7tuw:a (8.2) BS01 LYC ? GO:0005886 ... P97253 37399405
    38 7tuw:c (8.2) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    39 7tuw:e (8.2) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    40 7tv3:A (11.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    41 7tv3:C (11.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    42 7tv3:D (11.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    43 7tv3:G (11.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    44 7tv3:I (11.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    45 7tv3:K (11.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    46 7tv3:M (11.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    47 7tv3:O (11.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    48 7tv3:Q (11.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    49 7tv3:S (11.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    50 7tv3:U (11.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    51 7tv3:W (11.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    52 7tv3:Y (11.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    53 7tv3:a (11.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    54 7tv3:c (11.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    55 7tv3:e (11.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    56 7vzg:A (2.61) BS14 LYC ? GO:0009579 ... G2LDR8 36517472
    57 7vzg:a (2.61) BS25 LYC ? GO:0009579 ... G2LDR8 36517472
    58 7vzg:c (2.61) BS04 LYC ? GO:0009055 ... G2LDR3 36517472
    59 7vzr:A (2.22) BS14 LYC ? GO:0009579 ... G2LDR8 N/A
    60 7vzr:a (2.22) BS25 LYC ? GO:0009579 ... G2LDR8 N/A
    61 7vzr:c (2.22) BS04 LYC ? GO:0009055 ... G2LDR3 N/A
    62 8fb9:A (6.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    63 8fb9:C (6.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    64 8fb9:D (6.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    65 8fb9:G (6.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    66 8fb9:I (6.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    67 8fb9:K (6.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    68 8fb9:M (6.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    69 8fb9:O (6.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    70 8fb9:Q (6.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    71 8fb9:S (6.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    72 8fb9:U (6.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    73 8fb9:W (6.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    74 8fb9:Y (6.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    75 8fb9:a (6.4) BS01 LYC ? GO:0005886 ... P97253 37399405
    76 8fb9:c (6.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    77 8fb9:e (6.4) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    78 8fbb:C (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    79 8fbb:D (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    80 8fbb:G (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    81 8fbb:I (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    82 8fbb:K (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    83 8fbb:M (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    84 8fbb:O (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    85 8fbb:Q (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    86 8fbb:S (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    87 8fbb:U (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    88 8fbb:W (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    89 8fbb:Y (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    90 8fbb:a (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    91 8fbb:c (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    92 8fbb:e (11.3) BS01 LYC ? GO:0005886 ... Q7M119 37399405
    93 8fbb:g (11.3) BS01 LYC ? GO:0005886 ... P97253 37399405
    94 8k5o:3 (2.42) BS02 LYC ? GO:0005886 ... A0A120MZP7 38411333
    95 8k5o:4 (2.42) BS02 LYC ? GO:0005886 ... A0A110B4Z6 38411333
    96 8k5o:6 (2.42) BS02 LYC ? GO:0005886 ... A0A0X8XBE4 38411333
    97 8k5o:z (2.42) BS02 LYC ? GO:0005886 ... A0A0X8XBE4 38411333
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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