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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5b6f:A (2.1) BS01 LTX N/A N/A N/A N/A
    2 5b6f:B (2.1) BS01 LTX N/A N/A N/A N/A
    3 5b6f:C (2.1) BS01 LTX N/A N/A N/A N/A
    4 5b6f:D (2.1) BS01 LTX N/A N/A N/A N/A
    5 5b6f:E (2.1) BS01 LTX N/A N/A N/A N/A
    6 5b6f:F (2.1) BS01 LTX N/A N/A N/A N/A
    7 5b6f:G (2.1) BS01 LTX N/A N/A N/A N/A
    8 5b6f:H (2.1) BS01 LTX N/A N/A N/A N/A
    9 5h9n:A (1.28) BS01 LTX ? GO:0005576 ... Q7YT09 27124118 MOAD: Ka=21000000M^-1
    10 5kvl:H (1.74) BS01 LTX N/A N/A N/A N/A
    11 5kvl:L (1.74) BS01 LTX N/A N/A N/A N/A
    12 5uja:A (3.34) BS01 LTX 7.6.2.2
    7.6.2.3    		 GO:0005524 ... Q8HXQ5 28238471
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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