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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2e59:A (2.21) BS02 LP4 ? GO:0001530 ... Q9Y6Y9 17569869
    2 3mu3:A (2.4) BS01 LP4 ? GO:0005576 ... Q90890 20534476
    3 3mu3:B (2.4) BS01 LP4 ? GO:0005576 ... Q90890 20534476
    4 3vq1:C (2.7) BS01 LP4 ? GO:0001530 ... Q9JHF9 22532668
    5 3vq1:D (2.7) BS01 LP4 ? GO:0001530 ... Q9JHF9 22532668
    6 3vq2:C (2.48) BS01 LP4 ? GO:0001530 ... Q9JHF9 22532668
    7 3vq2:D (2.48) BS01 LP4 ? GO:0001530 ... Q9JHF9 22532668
    8 4g8a:C (2.4) BS01 LP4 ? GO:0001530 ... Q9Y6Y9 23055527
    9 4g8a:D (2.4) BS01 LP4 ? GO:0001530 ... Q9Y6Y9 23055527
    10 4lkv:A (3.5109) BS01 LP4 2.7.1.130 GO:0005524 ... O67572 25023290
    11 5ijd:C (2.7) BS01 LP4 ? GO:0001530 ... Q9JHF9 26831104
    12 5ijd:D (2.7) BS01 LP4 ? GO:0001530 ... Q9JHF9 26831104
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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