Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2fyn:A (3.2) BS04 LOP ? GO:0005886 ... Q02761 16924113
    2 2fyn:D (3.2) BS04 LOP ? GO:0005886 ... Q02761 16924113
    3 2fyn:G (3.2) BS04 LOP ? GO:0005886 ... Q02761 16924113
    4 2fyn:J (3.2) BS04 LOP ? GO:0005886 ... Q02761 16924113
    5 2fyn:M (3.2) BS04 LOP ? GO:0005886 ... Q02761 16924113
    6 2fyn:P (3.2) BS04 LOP ? GO:0005886 ... Q02761 16924113
    7 2qjk:A (3.1) BS04 LOP ? GO:0005886 ... Q02761 18039651
    8 2qjk:D (3.1) BS04 LOP ? GO:0005886 ... Q02761 18039651
    9 2qjk:G (3.1) BS04 LOP ? GO:0005886 ... Q02761 18039651
    10 2qjk:J (3.1) BS04 LOP ? GO:0005886 ... Q02761 18039651
    11 2qjk:M (3.1) BS04 LOP ? GO:0005886 ... Q02761 18039651
    12 2qjk:P (3.1) BS04 LOP ? GO:0005886 ... Q02761 18039651
    13 2qjp:A (2.6) BS04 LOP ? GO:0005886 ... Q02761 18039651
    14 2qjp:D (2.6) BS04 LOP ? GO:0005886 ... Q02761 18039651
    15 2qjp:G (2.6) BS04 LOP ? GO:0005886 ... Q02761 18039651
    16 2qjp:J (2.6) BS04 LOP ? GO:0005886 ... Q02761 18039651
    17 2qjy:A (2.4) BS04 LOP ? GO:0005886 ... Q02761 18039651
    18 2qjy:D (2.4) BS04 LOP ? GO:0005886 ... Q02761 18039651
    19 2qjy:G (2.4) BS04 LOP ? GO:0005886 ... Q02761 18039651
    20 2qjy:J (2.4) BS04 LOP ? GO:0005886 ... Q02761 18039651
    21 2qjy:M (2.4) BS04 LOP ? GO:0005886 ... Q02761 18039651
    22 2qjy:P (2.4) BS04 LOP ? GO:0005886 ... Q02761 18039651
    23 3ayf:A (2.5) BS05 LOP ? GO:0004129 ... B3Y963 22266822
    24 3ayf:A (2.5) BS06 LOP ? GO:0004129 ... B3Y963 22266822
    25 3ayg:A (2.7) BS05 LOP ? GO:0004129 ... B3Y963 22266822
    26 3ayg:A (2.7) BS06 LOP ? GO:0004129 ... B3Y963 22266822
    27 5kkz:A (2.97) BS05 LOP ? GO:0005886 ... Q02761 27758861
    28 5kkz:E (2.97) BS05 LOP ? GO:0005886 ... Q02761 27758861
    29 5kkz:K (2.97) BS05 LOP ? GO:0005886 ... Q02761 27758861
    30 5kkz:O (2.97) BS05 LOP ? GO:0005886 ... Q02761 27758861
    31 5kli:A (2.996) BS05 LOP ? GO:0005886 ... Q02761 27758861
    32 5kli:E (2.996) BS05 LOP ? GO:0005886 ... Q02761 27758861
    33 5kli:K (2.996) BS05 LOP ? GO:0005886 ... Q02761 27758861
    34 5kli:O (2.996) BS05 LOP ? GO:0005886 ... Q02761 27758861
    35 6bqc:A (2.073) BS02 LOP 2.1.1.79 GO:0005737 ... P0A9H7 30057024
    36 6qq6:A (3.3) BS05 LOP N/A GO:0004129 ... N/A 31489376
    37 6qq6:B (3.3) BS05 LOP N/A GO:0004129 ... N/A 31489376
    38 6qq6:B (3.3) BS06 LOP N/A GO:0004129 ... N/A 31489376
    39 7psl:A (3.3) BS01 LOP 7.-.-.- GO:0005524 ... P40416 34936443
    40 7psl:B (3.3) BS01 LOP 7.-.-.- GO:0005524 ... P40416 34936443
    41 7psm:A (3.4) BS02 LOP 7.-.-.- GO:0005524 ... P40416 34936443
    42 7psm:B (3.4) BS03 LOP 7.-.-.- GO:0005524 ... P40416 34936443
    43 7psn:A (2.9) BS03 LOP 7.-.-.- GO:0005524 ... P40416 34936443
    44 7psn:A (2.9) BS04 LOP 7.-.-.- GO:0005524 ... P40416 34936443
    45 7psn:B (2.9) BS04 LOP 7.-.-.- GO:0005524 ... P40416 34936443
    46 7psn:B (2.9) BS05 LOP 7.-.-.- GO:0005524 ... P40416 34936443
    47 7tlj:A (2.91) BS04 LOP ? GO:0005886 ... Q02761 N/A
    48 7tlj:E (2.91) BS04 LOP ? GO:0005886 ... Q02761 N/A
    49 8bgw:A (2.2) BS07 LOP N/A GO:0004129 ... N/A 37296134
    50 8bgw:A (2.2) BS08 LOP N/A GO:0004129 ... N/A 37296134
    51 8bgw:A (2.2) BS09 LOP N/A GO:0004129 ... N/A 37296134
    52 8bgw:A (2.2) BS10 LOP N/A GO:0004129 ... N/A 37296134
    53 8bgw:A (2.2) BS11 LOP N/A GO:0004129 ... N/A 37296134
    54 8bgw:A (2.2) BS12 LOP N/A GO:0004129 ... N/A 37296134
    55 8bgw:A (2.2) BS14 LOP N/A GO:0004129 ... N/A 37296134
    56 8bgw:A (2.2) BS15 LOP N/A GO:0004129 ... N/A 37296134
    57 8bgw:B (2.2) BS02 LOP N/A GO:0004129 ... N/A 37296134
    58 8bgw:B (2.2) BS03 LOP N/A GO:0004129 ... N/A 37296134
    59 8bgw:B (2.2) BS04 LOP N/A GO:0004129 ... N/A 37296134
    60 8bgw:B (2.2) BS11 LOP N/A GO:0004129 ... N/A 37296134
    61 8bgw:B (2.2) BS12 LOP N/A GO:0004129 ... N/A 37296134
    62 8bgw:B (2.2) BS13 LOP N/A GO:0004129 ... N/A 37296134
    63 8bgw:B (2.2) BS14 LOP N/A GO:0004129 ... N/A 37296134
    64 8bgw:B (2.2) BS15 LOP N/A GO:0004129 ... N/A 37296134
    65 8bgw:B (2.2) BS16 LOP N/A GO:0004129 ... N/A 37296134
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218