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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fk6:A (1.9) BS01 LNL ? GO:0006869 ... P19656 11327766
    2 2byo:A (2.15) BS05 LNL ? GO:0005319 ... P9WK65 16541102
    3 4e1g:A (2.1) BS01 LNL 1.14.99.1 GO:0001516 ... Q05769 22637474
    4 4e1g:B (2.1) BS01 LNL 1.14.99.1 GO:0001516 ... Q05769 22637474
    5 7ffx:A (0.88) BS01 LNL ? GO:0005515 ... P05413 N/A
    6 8c29:C (2.785) BS15 LNL ? GO:0005737 ... R4ZGZ0 37550369
    7 8c29:C (2.785) BS16 LNL ? GO:0005737 ... R4ZGZ0 37550369
    8 8c29:b (2.785) BS18 LNL ? GO:0009507 ... R4ZGX1 37550369
    9 8c29:c (2.785) BS15 LNL ? GO:0005737 ... R4ZGZ0 37550369
    10 8c29:c (2.785) BS16 LNL ? GO:0005737 ... R4ZGZ0 37550369
    11 8c29:c (2.785) BS17 LNL ? GO:0005737 ... R4ZGZ0 37550369
    12 8c29:c (2.785) BS18 LNL ? GO:0005737 ... R4ZGZ0 37550369
    13 8c29:t (2.785) BS01 LNL ? GO:0005737 ... R4ZGU2 37550369
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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