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BioLiP
Download all results in tab-seperated text for 136 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4b4a:A (3.5) BS01 LMN ? GO:0005886 ... O67305 23201679
    2 6l3t:A (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    3 6l3t:B (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    4 6l3t:C (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    5 6l3t:D (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    6 6l3t:E (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    7 6l3t:F (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    8 6rfq:J (3.3) BS01 LMN ? GO:0005739 ... Q6C674 31844670
    9 6rfr:4 (3.2) BS01 LMN 7.1.1.2 GO:0003954 ... Q9B6D6 31844670
    10 6rfr:J (3.2) BS01 LMN ? GO:0005739 ... Q6C674 31844670
    11 6rfr:j (3.2) BS01 LMN 1.6.99.3 GO:0016020 ... B5RSK9 31844670
    12 6s8h:F (3.7) BS01 LMN ? GO:0005886 ... P0AFA1 31519889
    13 6s8h:G (3.7) BS02 LMN ? GO:0005886 ... A0A0H2V3J7 31519889
    14 6s8n:F (3.1) BS04 LMN ? GO:0005886 ... P0AFA1 31519889
    15 6s8n:G (3.1) BS02 LMN ? GO:0005886 ... A0A0H2V3J7 31519889
    16 6sp2:A (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    17 6sp2:A (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    18 6sp2:A (3.33) BS04 LMN ? GO:0016020 ... Q9U6P4 31907454
    19 6sp2:A (3.33) BS05 LMN ? GO:0016020 ... Q9U6P4 31907454
    20 6sp2:B (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    21 6sp2:B (3.33) BS02 LMN ? GO:0016020 ... Q9U6P4 31907454
    22 6sp2:B (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    23 6sp2:B (3.33) BS05 LMN ? GO:0016020 ... Q9U6P4 31907454
    24 6sp2:C (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    25 6sp2:C (3.33) BS02 LMN ? GO:0016020 ... Q9U6P4 31907454
    26 6sp2:C (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    27 6sp2:C (3.33) BS05 LMN ? GO:0016020 ... Q9U6P4 31907454
    28 6sp2:D (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    29 6sp2:D (3.33) BS02 LMN ? GO:0016020 ... Q9U6P4 31907454
    30 6sp2:D (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    31 6sp2:D (3.33) BS05 LMN ? GO:0016020 ... Q9U6P4 31907454
    32 6sp2:E (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    33 6sp2:E (3.33) BS02 LMN ? GO:0016020 ... Q9U6P4 31907454
    34 6sp2:E (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    35 6sp2:E (3.33) BS05 LMN ? GO:0016020 ... Q9U6P4 31907454
    36 6sp2:F (3.33) BS01 LMN ? GO:0016020 ... Q9U6P4 31907454
    37 6sp2:F (3.33) BS02 LMN ? GO:0016020 ... Q9U6P4 31907454
    38 6sp2:F (3.33) BS03 LMN ? GO:0016020 ... Q9U6P4 31907454
    39 6sp2:F (3.33) BS04 LMN ? GO:0016020 ... Q9U6P4 31907454
    40 6wqz:A (2.8) BS01 LMN ? GO:0006914 ... Q7Z3C6 32610138
    41 6wqz:A (2.8) BS02 LMN ? GO:0006914 ... Q7Z3C6 32610138
    42 6wqz:B (2.8) BS01 LMN ? GO:0006914 ... Q7Z3C6 32610138
    43 6wqz:B (2.8) BS02 LMN ? GO:0006914 ... Q7Z3C6 32610138
    44 6wqz:C (2.8) BS01 LMN ? GO:0006914 ... Q7Z3C6 32610138
    45 6wqz:C (2.8) BS02 LMN ? GO:0006914 ... Q7Z3C6 32610138
    46 6wr4:A (2.9) BS01 LMN ? GO:0000045 ... Q7Z3C6 32610138
    47 6wr4:A (2.9) BS02 LMN ? GO:0000045 ... Q7Z3C6 32610138
    48 6wr4:B (2.9) BS01 LMN ? GO:0000045 ... Q7Z3C6 32610138
    49 6wr4:B (2.9) BS02 LMN ? GO:0000045 ... Q7Z3C6 32610138
    50 6wr4:C (2.9) BS01 LMN ? GO:0000045 ... Q7Z3C6 32610138
    51 6wr4:C (2.9) BS02 LMN ? GO:0000045 ... Q7Z3C6 32610138
    52 6y79:2 (2.96) BS01 LMN 7.1.1.2 GO:0005739 ... Q9B6C8 33243981
    53 6y79:4 (2.96) BS01 LMN 7.1.1.2 GO:0003954 ... Q9B6D6 33243981
    54 6y79:4 (2.96) BS02 LMN 7.1.1.2 GO:0003954 ... Q9B6D6 33243981
    55 6y79:J (2.96) BS01 LMN ? GO:0005739 ... Q6C674 33243981
    56 6y79:J (2.96) BS02 LMN ? GO:0005739 ... Q6C674 33243981
    57 6y79:j (2.96) BS01 LMN 1.6.99.3 GO:0016020 ... B5RSK9 33243981
    58 6y79:j (2.96) BS02 LMN 1.6.99.3 GO:0016020 ... B5RSK9 33243981
    59 7aqq:M (3.06) BS02 LMN 7.1.1.2 GO:0003954 ... P93313 33768254
    60 7aqq:N (3.06) BS02 LMN 7.1.1.2 GO:0005739 ... O05000 33768254
    61 7aqq:d (3.06) BS01 LMN ? GO:0000325 ... Q94AL6 33768254
    62 7ar7:M (3.72) BS01 LMN 7.1.1.2 GO:0003954 ... P93313 33768254
    63 7ar7:N (3.72) BS01 LMN 7.1.1.2 GO:0005739 ... O05000 33768254
    64 7ar7:d (3.72) BS01 LMN ? GO:0000325 ... Q94AL6 33768254
    65 7ar8:M (3.53) BS01 LMN 7.1.1.2 GO:0003954 ... P93313 33768254
    66 7ar8:N (3.53) BS01 LMN 7.1.1.2 GO:0005739 ... O05000 33768254
    67 7ar8:d (3.53) BS01 LMN ? GO:0000325 ... Q94AL6 33768254
    68 7arb:M (3.41) BS01 LMN 7.1.1.2 GO:0003954 ... P93313 33768254
    69 7arb:d (3.41) BS01 LMN ? GO:0000325 ... Q94AL6 33768254
    70 7d0i:B (3.0) BS01 LMN ? GO:0000045 ... O74312 33106658
    71 7d0i:B (3.0) BS02 LMN ? GO:0000045 ... O74312 33106658
    72 7d0i:D (3.0) BS01 LMN ? GO:0000045 ... O74312 33106658
    73 7d0i:D (3.0) BS02 LMN ? GO:0000045 ... O74312 33106658
    74 7d0i:F (3.0) BS01 LMN ? GO:0000045 ... O74312 33106658
    75 7d0i:F (3.0) BS02 LMN ? GO:0000045 ... O74312 33106658
    76 7d0i:H (3.0) BS01 LMN ? GO:0000045 ... O74312 33106658
    77 7d0i:H (3.0) BS02 LMN ? GO:0000045 ... O74312 33106658
    78 7d0i:J (3.0) BS01 LMN ? GO:0000045 ... O74312 33106658
    79 7d0i:J (3.0) BS02 LMN ? GO:0000045 ... O74312 33106658
    80 7d0i:L (3.0) BS01 LMN ? GO:0000045 ... O74312 33106658
    81 7d0i:L (3.0) BS02 LMN ? GO:0000045 ... O74312 33106658
    82 7o6y:2 (3.4) BS03 LMN 7.1.1.2 GO:0005739 ... Q9B6C8 34767441
    83 7o6y:J (3.4) BS01 LMN ? GO:0005739 ... Q6C674 34767441
    84 7o6y:J (3.4) BS02 LMN ? GO:0005739 ... Q6C674 34767441
    85 7o6y:a (3.4) BS01 LMN ? GO:0005739 ... Q6CA88 34767441
    86 7o6y:j (3.4) BS01 LMN 1.6.99.3 GO:0016020 ... B5RSK9 34767441
    87 7o71:J (2.4) BS01 LMN ? GO:0005739 ... Q6C674 34767441
    88 7o71:J (2.4) BS02 LMN ? GO:0005739 ... Q6C674 34767441
    89 7o71:j (2.4) BS01 LMN 1.6.99.3 GO:0016020 ... B5RSK9 34767441
    90 7z0s:D (2.6) BS02 LMN ? GO:0005886 ... P16430 36104349
    91 7zka:A (2.9) BS06 LMN 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    92 7zkq:b (3.15) BS02 LMN ? N/A A0A1D8NGI5 36383672
    93 7zmb:2 (2.75) BS01 LMN 7.1.1.2 GO:0005739 ... G1DJ98 36427319
    94 7zmb:4 (2.75) BS01 LMN 7.1.1.2 GO:0003954 ... G1DJA7 36427319
    95 7zmb:b (2.75) BS01 LMN ? GO:0016020 ... G0S812 36427319
    96 7zmb:j (2.75) BS01 LMN ? GO:0016020 ... G0S5C8 36427319
    97 7zme:2 (2.83) BS01 LMN 7.1.1.2 GO:0005739 ... G1DJ98 36427319
    98 7zme:4 (2.83) BS01 LMN 7.1.1.2 GO:0003954 ... G1DJA7 36427319
    99 7zme:5 (2.83) BS01 LMN 7.1.1.2 GO:0008137 ... G1DJA3 36427319
    100 7zme:J (2.83) BS01 LMN ? GO:0005739 ... G0S2B3 36427319
    101 7zme:j (2.83) BS01 LMN ? GO:0016020 ... G0S5C8 36427319
    102 7zmg:2 (2.44) BS01 LMN 7.1.1.2 GO:0005739 ... G1DJ98 36427319
    103 7zmg:4 (2.44) BS01 LMN 7.1.1.2 GO:0003954 ... G1DJA7 36427319
    104 7zmg:4 (2.44) BS02 LMN 7.1.1.2 GO:0003954 ... G1DJA7 36427319
    105 7zmg:5 (2.44) BS01 LMN 7.1.1.2 GO:0008137 ... G1DJA3 36427319
    106 7zmg:J (2.44) BS01 LMN ? GO:0005739 ... G0S2B3 36427319
    107 7zmg:b (2.44) BS01 LMN ? GO:0016020 ... G0S812 36427319
    108 7zmg:j (2.44) BS01 LMN ? GO:0016020 ... G0S5C8 36427319
    109 7zmh:2 (2.47) BS01 LMN 7.1.1.2 GO:0005739 ... G1DJ98 36427319
    110 7zmh:4 (2.47) BS01 LMN 7.1.1.2 GO:0003954 ... G1DJA7 36427319
    111 7zmh:J (2.47) BS01 LMN ? GO:0005739 ... G0S2B3 36427319
    112 7zmh:b (2.47) BS01 LMN ? GO:0016020 ... G0S812 36427319
    113 7zmh:j (2.47) BS01 LMN ? GO:0016020 ... G0S5C8 36427319
    114 8blo:A (2.9) BS01 LMN ? GO:0005515 ... Q15849 37774028
    115 8blo:A (2.9) BS02 LMN ? GO:0005515 ... Q15849 37774028
    116 8blo:A (2.9) BS03 LMN ? GO:0005515 ... Q15849 37774028
    117 8blo:B (2.9) BS01 LMN ? GO:0005515 ... Q15849 37774028
    118 8blo:B (2.9) BS02 LMN ? GO:0005515 ... Q15849 37774028
    119 8blo:B (2.9) BS03 LMN ? GO:0005515 ... Q15849 37774028
    120 8blo:C (2.9) BS01 LMN ? GO:0005515 ... Q15849 37774028
    121 8blo:C (2.9) BS02 LMN ? GO:0005515 ... Q15849 37774028
    122 8blo:C (2.9) BS03 LMN ? GO:0005515 ... Q15849 37774028
    123 8gl6:A (3.2) BS01 LMN ? N/A A0A1M5G5I4 N/A
    124 8gl6:F (3.2) BS01 LMN ? N/A A5FJM7 N/A
    125 8gl8:A (2.2) BS01 LMN ? N/A A0A1M5G5I4 N/A
    126 8gl8:F (2.2) BS01 LMN ? N/A A5FJM7 N/A
    127 8glj:A (3.2) BS01 LMN ? N/A A0A1M5G5I4 N/A
    128 8glj:F (3.2) BS01 LMN ? N/A A5FJM7 N/A
    129 8glk:A (2.8) BS01 LMN ? N/A A0A1M5G5I4 N/A
    130 8glk:F (2.8) BS01 LMN ? N/A A5FJM7 N/A
    131 8glm:A (2.2) BS01 LMN ? N/A A0A1M5G5I4 N/A
    132 8glm:F (2.2) BS01 LMN ? N/A A5FJM7 N/A
    133 8gln:A (2.2) BS01 LMN ? N/A A0A1M5G5I4 N/A
    134 8gln:F (2.2) BS01 LMN ? N/A A5FJM7 N/A
    135 8u56:A (2.75) BS01 LMN N/A N/A Q7Z3F1 N/A
    136 8u56:B (2.75) BS01 LMN N/A N/A Q7Z3F1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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