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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ham:A (2.5) BS01 LLL ? GO:0005524 ... Q9EVD7 19429619
    2 3ham:B (2.5) BS01 LLL ? GO:0005524 ... Q9EVD7 19429619
    3 5obm:L3 (3.4) BS02 LLL ? GO:0000027 ... P14126 29208708
    4 5obm:l2 (3.4) BS04 LLL ? GO:0002181 ... P0CX45 29208708
    5 5obm:l3 (3.4) BS06 LLL ? GO:0000027 ... P14126 29208708
    6 6mn1:A (2.25) BS02 LLL 2.3.1.81 GO:0008080 ... A0A059X981 N/A
    7 6mn1:B (2.25) BS03 LLL 2.3.1.81 GO:0008080 ... A0A059X981 N/A
    8 6mn5:A (2.58) BS01 LLL 2.3.1.81 GO:0008080 ... Q306W4 35338238
    9 6mn5:B (2.58) BS01 LLL 2.3.1.81 GO:0008080 ... Q306W4 35338238
    10 6mn5:C (2.58) BS01 LLL 2.3.1.81 GO:0008080 ... Q306W4 35338238
    11 6mn5:D (2.58) BS01 LLL 2.3.1.81 GO:0008080 ... Q306W4 35338238
    12 6mn5:E (2.58) BS01 LLL 2.3.1.81 GO:0008080 ... Q306W4 35338238
    13 6mn5:F (2.58) BS01 LLL 2.3.1.81 GO:0008080 ... Q306W4 35338238
    14 6np3:A (1.15) BS01 LLL 2.3.1.81 GO:0008080 ... Q47030 31515870 MOAD: Kd=0.34uM
    PDBbind: -logKd/Ki=6.47, Kd=0.34uM
    15 6ntj:A (1.9) BS01 LLL 2.3.1.81 GO:0016746 ... C4NV15 31515870 PDBbind: -logKd/Ki=6.47, Kd=0.34uM
    16 7uuj:A (1.78) BS01 LLL ? GO:0016740 ... A0A1D0AST6 N/A
    17 7uuj:A (1.78) BS02 LLL ? GO:0016740 ... A0A1D0AST6 N/A
    18 7uuj:B (1.78) BS01 LLL ? GO:0016740 ... A0A1D0AST6 N/A
    19 7uuj:B (1.78) BS02 LLL ? GO:0016740 ... A0A1D0AST6 N/A
    20 7uuj:C (1.78) BS01 LLL ? GO:0016740 ... A0A1D0AST6 N/A
    21 7uuj:C (1.78) BS02 LLL ? GO:0016740 ... A0A1D0AST6 N/A
    22 8f4r:B (3.06) BS01 LLL ? GO:0005515 ... P24177 36625574
    23 8jur:A (2.92) BS02 LLL N/A GO:0006811 ... L0RVU0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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