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BioLiP
Download all results in tab-seperated text for 252 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6koz:A (2.25) BS02 LEU 3.4.11.2 GO:0006508 ... Q9RVZ5 31923495
    202 6koz:B (2.25) BS02 LEU 3.4.11.2 GO:0006508 ... Q9RVZ5 31923495
    203 6kqy:A (3.3) BS01 LEU 6.1.1.4 GO:0000166 ... Q9P2J5 33910001
    204 6kqy:A (3.3) BS02 LEU 6.1.1.4 GO:0000166 ... Q9P2J5 33910001
    205 6m17:A (2.9) BS01 LEU ? GO:0003333 ... Q695T7 32132184
    206 6m17:C (2.9) BS01 LEU ? GO:0003333 ... Q695T7 32132184
    207 6nle:A (2.615) BS01 LEU ? GO:0005886 ... O67854 30755521
    208 6py4:A (2.0) BS01 LEU ? N/A Q3K7T6 31909676
    209 6qf2:A (1.733) BS06 LEU 3.4.24.27 GO:0004222 ... P00800 31316815
    210 6s84:B (2.89) BS01 LEU N/A GO:0002949 ... N/A 29741707
    211 6tdp:A (1.4) BS02 LEU ? N/A F6IQS1 32161266
    212 6w3s:A (1.4) BS01 LEU ? N/A Q0P864 32403336
    213 6w3s:B (1.4) BS01 LEU ? N/A Q0P864 32403336
    214 6yjy:B (1.67) BS03 LEU 2.3.2.5 GO:0005515 ... Q16769 32551535
    215 6yu6:A (2.35) BS01 LEU ? GO:0016020 ... Q9KDT3 33155685
    216 6yu6:B (2.35) BS01 LEU ? GO:0016020 ... Q9KDT3 33155685
    217 6ywz:A (2.12) BS03 LEU ? N/A Q9Y566 34163995
    218 6ywz:B (2.12) BS03 LEU ? N/A Q9Y566 34163995
    219 6yx1:A (1.8) BS04 LEU ? N/A Q9Y566 34163995
    220 6yx1:B (1.8) BS04 LEU ? N/A Q9Y566 34163995
    221 7cmi:B (2.9) BS01 LEU ? GO:0003333 ... Q9UHI5 33298890
    222 7dii:A (2.403) BS01 LEU ? GO:0005886 ... O67854 33811858
    223 7dii:B (2.403) BS01 LEU ? GO:0005886 ... O67854 33811858
    224 7dj1:A (3.528) BS01 LEU ? GO:0005886 ... O67854 33811858
    225 7dj1:B (3.528) BS01 LEU ? GO:0005886 ... O67854 33811858
    226 7dj2:A (2.4) BS01 LEU ? GO:0005886 ... O67854 33811858
    227 7dj2:B (2.4) BS01 LEU ? GO:0005886 ... O67854 33811858
    228 7djc:A (2.701) BS01 LEU ? GO:0005886 ... O67854 33811858
    229 7dwx:A (8.3) BS01 LEU ? GO:0003333 ... Q695T7 33737693
    230 7dwx:C (8.3) BS01 LEU ? GO:0003333 ... Q695T7 33737693
    231 7m32:A (1.82) BS08 LEU 1.3.1.2 GO:0000166 ... Q28943 34032117
    232 7nu5:A (2.58) BS01 LEU 6.1.1.4 GO:0000166 ... B4RNT1 36038645
    233 7oez:A (2.48) BS03 LEU 3.4.11.- GO:0006508 ... Q2U1F3 33989771
    234 7sr2:B (2.42) BS02 LEU ? N/A Q9H3E2 35223850
    235 8ar7:A (2.448) BS04 LEU 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    236 8ar7:B (2.448) BS04 LEU 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    237 8ar7:C (2.448) BS01 LEU 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    238 8ar7:D (2.448) BS01 LEU 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    239 8ar7:E (2.448) BS01 LEU 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    240 8ar7:F (2.448) BS01 LEU 1.4.1.3 GO:0000166 ... A0A140T871 36232607
    241 8c7u:A (3.15) BS03 LEU ? GO:0003677 ... Q834K5 37326020
    242 8c7u:B (3.15) BS03 LEU ? GO:0003677 ... Q834K5 37326020
    243 8eog:D (3.3) BS02 LEU ? GO:0005245 ... P13806 37196677
    244 8ft4:A (4.0) BS01 LEU ? GO:0005886 ... O67854 N/A
    245 8ft5:A (3.8) BS01 LEU ? GO:0005886 ... O67854 N/A
    246 8gkm:A (1.89) BS01 LEU ? N/A A0A561VI36 38030603
    247 8gkm:B (1.89) BS01 LEU ? N/A A0A561VI36 38030603
    248 8gsj:A (2.1) BS04 LEU ? GO:0008013 ... P25054 N/A
    249 8hlk:A (2.7) BS01 LEU ? GO:0003824 ... O54504 38340732
    250 8u3h:A (3.67) BS02 LEU ? GO:0005351 ... Q9NRA2 N/A
    251 8wx4:A (3.12) BS02 LEU ? GO:0005290 ... Q8N697 N/A
    252 8wx4:B (3.12) BS02 LEU ? GO:0005290 ... Q8N697 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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