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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1us0:A (0.66) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 15146478 MOAD: ic50=30nM
    BindingDB: IC50=30nM
    2 2i16:A (0.81) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 17139089 BindingDB: IC50=30nM
    3 2i17:A (0.81) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 17139089 BindingDB: IC50=30nM
    4 2pev:A (0.9) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 22752989 MOAD: Kd=61nM
    BindingDB: IC50=30nM
    5 2pf8:A (0.85) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 22752989 MOAD: Kd=61nM
    BindingDB: IC50=30nM
    6 2pfh:A (0.85) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 22752989 MOAD: Kd=61nM
    BindingDB: IC50=30nM
    7 2qxw:A (0.8) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 18250329 BindingDB: IC50=30nM
    8 2r24:A (1.752) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 18250329 BindingDB: IC50=30nM
    9 3ghr:A (1.0) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 19233199 BindingDB: IC50=30nM
    10 3ghs:A (1.0) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 19233199 BindingDB: IC50=30nM
    11 3ght:A (1.1) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 19233199 BindingDB: IC50=30nM
    12 3ghu:A (1.2) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 19233199 BindingDB: IC50=30nM
    13 3lbo:A (1.1) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21185307 MOAD: Kd=21.9nM
    BindingDB: IC50=30nM
    14 3ld5:A (1.27) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21185307 MOAD: Kd=1.19uM
    BindingDB: IC50=30nM
    15 3lql:A (1.13) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21185307 MOAD: Kd=1.64uM
    BindingDB: IC50=30nM
    16 3lz5:A (0.95) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21185307 MOAD: Kd=0.827uM
    BindingDB: IC50=30nM
    17 3onb:A (1.45) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21862860 BindingDB: IC50=30nM
    18 3onc:A (1.06) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21862860 BindingDB: IC50=30nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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