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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3mdy:A (2.05) BS01 LDN 2.7.11.30 GO:0004672 ... O00238 N/A
    2 3mdy:C (2.05) BS01 LDN 2.7.11.30 GO:0004672 ... O00238 N/A
    3 3my0:A (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    4 3my0:B (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    5 3my0:C (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    6 3my0:D (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    7 3my0:E (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    8 3my0:F (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    9 3my0:G (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    10 3my0:H (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    11 3my0:I (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    12 3my0:J (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    13 3my0:K (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    14 3my0:L (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    15 3my0:M (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    16 3my0:N (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    17 3my0:O (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    18 3my0:P (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    19 3my0:Q (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    20 3my0:R (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    21 3my0:S (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    22 3my0:T (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    23 3my0:U (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    24 3my0:V (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    25 3my0:W (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    26 3my0:X (2.65) BS01 LDN 2.7.11.30 GO:0004672 ... P37023 25557927 BindingDB: IC50=2.0nM
    27 3q4u:A (1.82) BS01 LDN 2.7.11.30 GO:0004672 ... Q04771 23646137 BindingDB: IC50=17nM
    28 3q4u:A (1.82) BS02 LDN 2.7.11.30 GO:0004672 ... Q04771 23646137 BindingDB: IC50=17nM
    29 3q4u:B (1.82) BS01 LDN 2.7.11.30 GO:0004672 ... Q04771 23646137 BindingDB: IC50=17nM
    30 3q4u:C (1.82) BS01 LDN 2.7.11.30 GO:0004672 ... Q04771 23646137 BindingDB: IC50=17nM
    31 3q4u:D (1.82) BS01 LDN 2.7.11.30 GO:0004672 ... Q04771 23646137 BindingDB: IC50=17nM
    32 6uns:A (2.3) BS01 LDN 2.7.11.30 GO:0004672 ... Q04771 34400635 BindingDB: IC50=17nM
    33 6uns:B (2.3) BS01 LDN 2.7.11.30 GO:0004672 ... Q04771 34400635 BindingDB: IC50=17nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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