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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 373 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6pqo:A (2.88) BS03 LBN ? GO:0005216 ... O75762 31866091
    2 6pqo:A (2.88) BS04 LBN ? GO:0005216 ... O75762 31866091
    3 6pqo:B (2.88) BS02 LBN ? GO:0005216 ... O75762 31866091
    4 6pqo:B (2.88) BS03 LBN ? GO:0005216 ... O75762 31866091
    5 6pqo:C (2.88) BS02 LBN ? GO:0005216 ... O75762 31866091
    6 6pqo:C (2.88) BS03 LBN ? GO:0005216 ... O75762 31866091
    7 6pqo:D (2.88) BS02 LBN ? GO:0005216 ... O75762 31866091
    8 6pqo:D (2.88) BS03 LBN ? GO:0005216 ... O75762 31866091
    9 6pqp:A (3.06) BS05 LBN ? GO:0005216 ... O75762 31866091
    10 6pqp:B (3.06) BS07 LBN ? GO:0005216 ... O75762 31866091
    11 6pqp:C (3.06) BS08 LBN ? GO:0005216 ... O75762 31866091
    12 6pqp:D (3.06) BS05 LBN ? GO:0005216 ... O75762 31866091
    13 6pqq:A (2.81) BS01 LBN ? GO:0005216 ... O75762 31866091
    14 6pqq:A (2.81) BS02 LBN ? GO:0005216 ... O75762 31866091
    15 6pqq:B (2.81) BS01 LBN ? GO:0005216 ... O75762 31866091
    16 6pqq:B (2.81) BS02 LBN ? GO:0005216 ... O75762 31866091
    17 6pqq:C (2.81) BS01 LBN ? GO:0005216 ... O75762 31866091
    18 6pqq:C (2.81) BS02 LBN ? GO:0005216 ... O75762 31866091
    19 6pqq:D (2.81) BS02 LBN ? GO:0005216 ... O75762 31866091
    20 6pqq:D (2.81) BS03 LBN ? GO:0005216 ... O75762 31866091
    21 6uxq:A (1.696) BS04 LBN ? GO:0042981 ... Q16611 32929280
    22 6uxq:B (1.696) BS02 LBN ? GO:0042981 ... Q16611 32929280
    23 7dsv:A (3.4) BS01 LBN ? GO:0006812 ... P19634 34108458
    24 7dsv:A (3.4) BS02 LBN ? GO:0006812 ... P19634 34108458
    25 7dsv:B (3.4) BS01 LBN ? GO:0006812 ... P19634 34108458
    26 7dsv:B (3.4) BS02 LBN ? GO:0006812 ... P19634 34108458
    27 7dsw:A (3.3) BS01 LBN ? GO:0006812 ... P19634 34108458
    28 7dsw:A (3.3) BS02 LBN ? GO:0006812 ... P19634 34108458
    29 7dsw:A (3.3) BS03 LBN ? GO:0006812 ... P19634 34108458
    30 7dsw:B (3.3) BS01 LBN ? GO:0006812 ... P19634 34108458
    31 7dsw:B (3.3) BS02 LBN ? GO:0006812 ... P19634 34108458
    32 7dsw:B (3.3) BS03 LBN ? GO:0006812 ... P19634 34108458
    33 7f8j:A (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    34 7f8j:A (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    35 7f8j:A (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    36 7f8j:A (3.6) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    37 7f8j:A (3.6) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    38 7f8j:A (3.6) BS06 LBN ? GO:0002020 ... Q96RD7 35133866
    39 7f8j:B (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    40 7f8j:B (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    41 7f8j:B (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    42 7f8j:B (3.6) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    43 7f8j:B (3.6) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    44 7f8j:C (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    45 7f8j:C (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    46 7f8j:C (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    47 7f8j:C (3.6) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    48 7f8j:D (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    49 7f8j:D (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    50 7f8j:D (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    51 7f8j:E (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    52 7f8j:E (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    53 7f8j:E (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    54 7f8j:E (3.6) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    55 7f8j:F (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    56 7f8j:F (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    57 7f8j:F (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    58 7f8j:F (3.6) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    59 7f8j:F (3.6) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    60 7f8j:G (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    61 7f8j:G (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    62 7f8j:G (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    63 7f8j:G (3.6) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    64 7f8j:G (3.6) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    65 7f8n:A (3.4) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    66 7f8n:A (3.4) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    67 7f8n:A (3.4) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    68 7f8n:A (3.4) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    69 7f8n:A (3.4) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    70 7f8n:A (3.4) BS06 LBN ? GO:0002020 ... Q96RD7 35133866
    71 7f8n:B (3.4) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    72 7f8n:B (3.4) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    73 7f8n:B (3.4) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    74 7f8n:B (3.4) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    75 7f8n:B (3.4) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    76 7f8n:B (3.4) BS06 LBN ? GO:0002020 ... Q96RD7 35133866
    77 7f8n:B (3.4) BS07 LBN ? GO:0002020 ... Q96RD7 35133866
    78 7f8n:C (3.4) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    79 7f8n:C (3.4) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    80 7f8n:C (3.4) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    81 7f8n:C (3.4) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    82 7f8n:C (3.4) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    83 7f8n:C (3.4) BS06 LBN ? GO:0002020 ... Q96RD7 35133866
    84 7f8n:C (3.4) BS07 LBN ? GO:0002020 ... Q96RD7 35133866
    85 7f8n:D (3.4) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    86 7f8n:D (3.4) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    87 7f8n:D (3.4) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    88 7f8n:D (3.4) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    89 7f8n:D (3.4) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    90 7f8n:D (3.4) BS06 LBN ? GO:0002020 ... Q96RD7 35133866
    91 7f8n:D (3.4) BS07 LBN ? GO:0002020 ... Q96RD7 35133866
    92 7f8n:E (3.4) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    93 7f8n:E (3.4) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    94 7f8n:E (3.4) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    95 7f8n:E (3.4) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    96 7f8n:E (3.4) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    97 7f8n:E (3.4) BS06 LBN ? GO:0002020 ... Q96RD7 35133866
    98 7f8n:E (3.4) BS07 LBN ? GO:0002020 ... Q96RD7 35133866
    99 7f8n:F (3.4) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    100 7f8n:F (3.4) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    101 7f8n:F (3.4) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    102 7f8n:F (3.4) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    103 7f8n:F (3.4) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    104 7f8n:F (3.4) BS06 LBN ? GO:0002020 ... Q96RD7 35133866
    105 7f8n:F (3.4) BS07 LBN ? GO:0002020 ... Q96RD7 35133866
    106 7f8n:G (3.4) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    107 7f8n:G (3.4) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    108 7f8n:G (3.4) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    109 7f8n:G (3.4) BS04 LBN ? GO:0002020 ... Q96RD7 35133866
    110 7f8n:G (3.4) BS05 LBN ? GO:0002020 ... Q96RD7 35133866
    111 7f8n:G (3.4) BS06 LBN ? GO:0002020 ... Q96RD7 35133866
    112 7f8n:G (3.4) BS07 LBN ? GO:0002020 ... Q96RD7 35133866
    113 7f8o:A (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    114 7f8o:A (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    115 7f8o:A (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    116 7f8o:B (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    117 7f8o:B (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    118 7f8o:B (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    119 7f8o:C (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    120 7f8o:C (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    121 7f8o:C (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    122 7f8o:D (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    123 7f8o:D (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    124 7f8o:D (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    125 7f8o:E (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    126 7f8o:E (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    127 7f8o:E (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    128 7f8o:F (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    129 7f8o:F (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    130 7f8o:F (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    131 7f8o:G (3.6) BS01 LBN ? GO:0002020 ... Q96RD7 35133866
    132 7f8o:G (3.6) BS02 LBN ? GO:0002020 ... Q96RD7 35133866
    133 7f8o:G (3.6) BS03 LBN ? GO:0002020 ... Q96RD7 35133866
    134 7lhv:A (2.75) BS03 LBN ? GO:0008271 ... Q9FY46 34294705
    135 7lhv:B (2.75) BS05 LBN ? GO:0008271 ... Q9FY46 34294705
    136 7lp9:A (2.63) BS02 LBN ? GO:0000122 ... O35433 34239123
    137 7lp9:A (2.63) BS05 LBN ? GO:0000122 ... O35433 34239123
    138 7lp9:B (2.63) BS02 LBN ? GO:0000122 ... O35433 34239123
    139 7lp9:B (2.63) BS04 LBN ? GO:0000122 ... O35433 34239123
    140 7lp9:C (2.63) BS02 LBN ? GO:0000122 ... O35433 34239123
    141 7lp9:C (2.63) BS05 LBN ? GO:0000122 ... O35433 34239123
    142 7lp9:D (2.63) BS03 LBN ? GO:0000122 ... O35433 34239123
    143 7lp9:D (2.63) BS05 LBN ? GO:0000122 ... O35433 34239123
    144 7lpa:A (3.37) BS01 LBN ? GO:0000122 ... O35433 34239123
    145 7lpa:B (3.37) BS02 LBN ? GO:0000122 ... O35433 34239123
    146 7lpa:C (3.37) BS02 LBN ? GO:0000122 ... O35433 34239123
    147 7lpa:D (3.37) BS03 LBN ? GO:0000122 ... O35433 34239123
    148 7lpb:A (3.54) BS01 LBN ? GO:0000122 ... O35433 34239123
    149 7lpb:A (3.54) BS04 LBN ? GO:0000122 ... O35433 34239123
    150 7lpb:B (3.54) BS01 LBN ? GO:0000122 ... O35433 34239123
    151 7lpb:B (3.54) BS03 LBN ? GO:0000122 ... O35433 34239123
    152 7lpb:C (3.54) BS01 LBN ? GO:0000122 ... O35433 34239123
    153 7lpb:C (3.54) BS03 LBN ? GO:0000122 ... O35433 34239123
    154 7lpb:D (3.54) BS01 LBN ? GO:0000122 ... O35433 34239123
    155 7lpb:D (3.54) BS03 LBN ? GO:0000122 ... O35433 34239123
    156 7lpc:A (3.06) BS02 LBN ? GO:0000122 ... O35433 34239123
    157 7lpc:A (3.06) BS05 LBN ? GO:0000122 ... O35433 34239123
    158 7lpc:B (3.06) BS02 LBN ? GO:0000122 ... O35433 34239123
    159 7lpc:B (3.06) BS05 LBN ? GO:0000122 ... O35433 34239123
    160 7lpc:C (3.06) BS02 LBN ? GO:0000122 ... O35433 34239123
    161 7lpc:C (3.06) BS05 LBN ? GO:0000122 ... O35433 34239123
    162 7lpc:D (3.06) BS02 LBN ? GO:0000122 ... O35433 34239123
    163 7lpc:D (3.06) BS05 LBN ? GO:0000122 ... O35433 34239123
    164 7lpd:A (3.55) BS01 LBN ? GO:0000122 ... O35433 34239123
    165 7lpd:B (3.55) BS01 LBN ? GO:0000122 ... O35433 34239123
    166 7lpd:C (3.55) BS01 LBN ? GO:0000122 ... O35433 34239123
    167 7lpd:D (3.55) BS01 LBN ? GO:0000122 ... O35433 34239123
    168 7lpe:A (3.72) BS01 LBN ? GO:0000122 ... O35433 34239123
    169 7lpe:B (3.72) BS01 LBN ? GO:0000122 ... O35433 34239123
    170 7lpe:C (3.72) BS01 LBN ? GO:0000122 ... O35433 34239123
    171 7lpe:D (3.72) BS01 LBN ? GO:0000122 ... O35433 34239123
    172 7nf6:A (3.05) BS01 LBN ? GO:0005975 ... W5P8K2 35577790
    173 7nf6:B (3.05) BS02 LBN ? GO:0003333 ... A0A6P3EL78 35577790
    174 7nf8:A (2.83) BS01 LBN ? GO:0005975 ... W5P8K2 35577790
    175 7nf8:B (2.83) BS02 LBN ? GO:0003333 ... A0A6P3EL78 35577790
    176 7rqu:A (3.05) BS02 LBN ? GO:0000122 ... O35433 35610228
    177 7rqu:A (3.05) BS05 LBN ? GO:0000122 ... O35433 35610228
    178 7rqu:B (3.05) BS02 LBN ? GO:0000122 ... O35433 35610228
    179 7rqu:B (3.05) BS05 LBN ? GO:0000122 ... O35433 35610228
    180 7rqu:C (3.05) BS02 LBN ? GO:0000122 ... O35433 35610228
    181 7rqu:C (3.05) BS05 LBN ? GO:0000122 ... O35433 35610228
    182 7rqu:D (3.05) BS02 LBN ? GO:0000122 ... O35433 35610228
    183 7rqu:D (3.05) BS05 LBN ? GO:0000122 ... O35433 35610228
    184 7rqv:A (3.45) BS01 LBN ? GO:0000122 ... O35433 35610228
    185 7rqv:B (3.45) BS02 LBN ? GO:0000122 ... O35433 35610228
    186 7rqv:C (3.45) BS01 LBN ? GO:0000122 ... O35433 35610228
    187 7rqv:D (3.45) BS02 LBN ? GO:0000122 ... O35433 35610228
    188 7rqw:A (3.11) BS02 LBN ? GO:0000122 ... O35433 35610228
    189 7rqw:B (3.11) BS03 LBN ? GO:0000122 ... O35433 35610228
    190 7rqw:C (3.11) BS02 LBN ? GO:0000122 ... O35433 35610228
    191 7rqw:D (3.11) BS01 LBN ? GO:0000122 ... O35433 35610228
    192 7rqx:A (3.36) BS01 LBN ? GO:0000122 ... O35433 35610228
    193 7rqx:A (3.36) BS05 LBN ? GO:0000122 ... O35433 35610228
    194 7rqx:B (3.36) BS02 LBN ? GO:0000122 ... O35433 35610228
    195 7rqx:B (3.36) BS03 LBN ? GO:0000122 ... O35433 35610228
    196 7rqx:C (3.36) BS01 LBN ? GO:0000122 ... O35433 35610228
    197 7rqx:C (3.36) BS04 LBN ? GO:0000122 ... O35433 35610228
    198 7rqx:D (3.36) BS02 LBN ? GO:0000122 ... O35433 35610228
    199 7rqx:D (3.36) BS03 LBN ? GO:0000122 ... O35433 35610228
    200 7rqy:A (3.04) BS02 LBN ? GO:0000122 ... O35433 35610228
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218