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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3l9r:C (2.3) BS01 L9Q ? N/A Q1L1H6 20519644
    2 3l9r:G (2.3) BS01 L9Q ? N/A Q1L1H6 20519644
    3 6or2:A (2.59) BS01 L9Q ? GO:0016020 ... A0QP27 31113875
    4 6w2x:A (3.6) BS01 L9Q ? GO:0004930 ... Q9UBS5 32580208
    5 6w2x:B (3.6) BS01 L9Q ? GO:0004888 ... O75899 32580208
    6 6w2y:A (3.2) BS02 L9Q ? GO:0004930 ... Q9UBS5 32580208
    7 6w2y:B (3.2) BS02 L9Q ? GO:0004930 ... Q9UBS5 32580208
    8 8glg:A (1.6) BS01 L9Q ? N/A P29016 37725977
    9 8hsi:A (3.1) BS01 L9Q ? GO:0016020 ... Q8NBN3 38992057
    10 8ifu:A (2.37) BS02 L9Q N/A GO:0016020 ... N/A N/A
    11 8ifu:A (2.37) BS03 L9Q N/A GO:0016020 ... N/A N/A
    12 8ifu:A (2.37) BS04 L9Q N/A GO:0016020 ... N/A N/A
    13 8ifu:A (2.37) BS05 L9Q N/A GO:0016020 ... N/A N/A
    14 8ifu:B (2.37) BS01 L9Q N/A GO:0016020 ... N/A N/A
    15 8ifu:B (2.37) BS02 L9Q N/A GO:0016020 ... N/A N/A
    16 8ifu:B (2.37) BS04 L9Q N/A GO:0016020 ... N/A N/A
    17 8ifu:B (2.37) BS05 L9Q N/A GO:0016020 ... N/A N/A
    18 8ifu:C (2.37) BS01 L9Q N/A GO:0016020 ... N/A N/A
    19 8ifu:C (2.37) BS02 L9Q N/A GO:0016020 ... N/A N/A
    20 8ifu:C (2.37) BS03 L9Q N/A GO:0016020 ... N/A N/A
    21 8ifu:C (2.37) BS04 L9Q N/A GO:0016020 ... N/A N/A
    22 8zam:A (2.5) BS01 L9Q N/A N/A Q8RUT8 39181878
    23 8zam:B (2.5) BS01 L9Q N/A N/A Q8RUT8 39181878
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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