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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4buq:A (2.199) BS01 KGM ? GO:0007155 ... A2IC68 24900609 MOAD: Kd=7.3nM
    PDBbind: -logKd/Ki=8.14, Kd=7.3nM
    2 4buq:B (2.199) BS01 KGM ? GO:0007155 ... A2IC68 24900609 MOAD: Kd=7.3nM
    3 4ca4:A (2.84) BS01 KGM ? GO:0007155 ... A2IC68 28250938 PDBbind: -logKd/Ki=7.18, Kd=65.5nM
    4 4ca4:B (2.84) BS01 KGM ? GO:0007155 ... A2IC68 28250938
    5 4lov:A (1.5) BS01 KGM ? GO:0007155 ... P08191 24476493 MOAD: Kd=17.1nM
    PDBbind: -logKd/Ki=7.77, Kd=17.1nM
    6 4xo8:A (1.698) BS01 KGM ? GO:0007155 ... P08191 26948702 MOAD: Kd=1.1nM
    PDBbind: -logKd/Ki=8.96, Kd=1.1nM
    7 4xo8:B (1.698) BS01 KGM ? GO:0007155 ... P08191 26948702 MOAD: Kd=1.1nM
    8 4xob:A (3.003) BS02 KGM ? GO:0005515 ... P08191 26948702
    9 4xob:C (3.003) BS02 KGM ? GO:0005515 ... P08191 26948702
    10 4xob:E (3.003) BS02 KGM ? GO:0005515 ... P08191 26948702
    11 4xob:G (3.003) BS02 KGM ? GO:0005515 ... P08191 26948702
    12 4xoc:A (1.42) BS01 KGM N/A GO:0007155 ... N/A 26948702 MOAD: Kd=3nM
    PDBbind: -logKd/Ki=8.52, Kd=3nM
    13 4xoc:B (1.42) BS01 KGM N/A GO:0007155 ... N/A 26948702 MOAD: Kd=3nM
    14 4xoe:A (2.4) BS02 KGM N/A GO:0007155 ... N/A 26948702 MOAD: Kd=9.9uM
    PDBbind: -logKd/Ki=5.00, Kd=9.9uM
    15 5fs5:A (1.42) BS01 KGM ? GO:0007155 ... P08191 28250938 MOAD: Kd=206.4nM
    PDBbind: -logKd/Ki=6.69, Kd=206.4nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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